Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G043800 [exp] 53 / 1e-08 AT1G55190 136 / 1e-40 PRENYLATED RAB ACCEPTOR 1.F2, PRA1 (Prenylated rab acceptor) family protein (.1) Potri.005G219100 [exp] 50 / 1e-07 AT1G55190 132 / 8e-39 PRENYLATED RAB ACCEPTOR 1.F2, PRA1 (Prenylated rab acceptor) family protein (.1) Potri.002G044000 [exp] 43 / 5e-05 AT1G55190 130 / 4e-38 PRENYLATED RAB ACCEPTOR 1.F2, PRA1 (Prenylated rab acceptor) family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008600 [exp] 177 / 1e-56 AT1G55190 47 / 7e-07 PRENYLATED RAB ACCEPTOR 1.F2, PRA1 (Prenylated rab acceptor) family protein (.1) Lus10042216 [exp] 168 / 4e-53 AT1G04260 43 / 2e-05 PRENYLATED RAB ACCEPTOR 1.D, CAMV movement protein interacting protein 7 (.1) Lus10008598 [exp] 167 / 1e-52 AT1G55190 44 / 9e-06 PRENYLATED RAB ACCEPTOR 1.F2, PRA1 (Prenylated rab acceptor) family protein (.1) Lus10000019 [exp] 65 / 1e-13 ND / Lus10033859 [exp] 48 / 1e-06 AT1G55190 149 / 1e-45 PRENYLATED RAB ACCEPTOR 1.F2, PRA1 (Prenylated rab acceptor) family protein (.1) Lus10014747 [exp] 45 / 9e-06 AT1G55190 147 / 9e-45 PRENYLATED RAB ACCEPTOR 1.F2, PRA1 (Prenylated rab acceptor) family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03208 [poplar] [flax] PRA1 PRA1 family protein
Representative CDS sequence Show only first row Show all	>Potri.017G027900.1 pacid=42813658 polypeptide=Potri.017G027900.1.p locus=Potri.017G027900 ID=Potri.017G027900.1.v4.1 annot-version=v4.1 ATGGCTGGCCATGGAACCATTCAGAGGCCAAGCACCATGTCACCACCAACCACGCCGACCGATCCTGAGGACTCGACAGGAAAGAACCGTGACGATTTCG AGCGACCCGAGTTCAAGCTAGTGTGCCCCTTCAGCATCCCTTCAAGCCCAGAAGCAGCTTCTCTCAGAATTATAAGAAATTTAGGCCACTTTGCGTTGTA TTACACACATTTTGTGTGGATTGTGCTCTTCATTGCCCTCATCCCAGAACGCAAGGTCTCTCTGATTTTTTTGGTCATCATGACATATGTGGCATCACTT TACCTGTTATTATTACGTGCCCTTCCTCCAAATTTTTATTTGCTGGATAAGATTATTGATAAGAGTATAGTGCTTGGCTTGATAGCTGTTGCAACTATGA TAGAGCTCATAGTGACAAAAGCTGGCTTGCATCTTGTTATCACCTTAGCAGCCACAGTTCCTATTGTTTTGATTCATGCCGTTTTGTGGGTTAGAGAGGA TTTCTGTGTTGAGGAGAGGACTGGTGGTGGTGGTGGTGGTGGTGGAGAATTGGTTCCTCTCGTTGATGATGAGTCAACGGCAATGGTGTGA
AA sequence Show only first row Show all	>Potri.017G027900.1 pacid=42813658 polypeptide=Potri.017G027900.1.p locus=Potri.017G027900 ID=Potri.017G027900.1.v4.1 annot-version=v4.1 MAGHGTIQRPSTMSPPTTPTDPEDSTGKNRDDFERPEFKLVCPFSIPSSPEAASLRIIRNLGHFALYYTHFVWIVLFIALIPERKVSLIFLVIMTYVASL YLLLLRALPPNFYLLDKIIDKSIVLGLIAVATMIELIVTKAGLHLVITLAATVPIVLIHAVLWVREDFCVEERTGGGGGGGGELVPLVDDESTAMV

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
					Potri.017G027900 [exp]	0	1
AT5G48380		BIR1	BAK1-interacting receptor-like...		Potri.010G178050 [exp]	1.00	0.9450
AT5G66850		MAPKKK5	mitogen-activated protein kina...		Potri.014G035500 [exp]	2.00	0.9378
AT1G52190			Major facilitator superfamily ...		Potri.006G240000 [exp]	2.82	0.9289
AT1G12970		PIRL3	plant intracellular ras group-...		Potri.010G046500 [exp]	3.87	0.9303
AT4G12560		CPR1, CPR30	CONSTITUTIVE EXPRESSER OF PR G...		Potri.011G121200 [exp]	3.87	0.9243
AT5G46410		SSP4	SCP1-like small phosphatase 4 ...		Potri.001G353700 [exp]	4.89	0.9200
AT3G09970			Calcineurin-like metallo-phosp...		Potri.002G156200 [exp]	7.74	0.8815
					Potri.004G188300 [exp]	9.16	0.9162
AT5G61210		SNP33, ATSNAP33...	soluble N-ethylmaleimide-sensi...		Potri.015G049000 [exp]	11.22	0.9053
AT3G28450			Leucine-rich repeat protein ki...		Potri.001G349900 [exp]	11.48	0.8989

Compare expression of checked genes

Potri.017G027900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.