Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G10600 372 / 7e-124 CYP81K2 "cytochrome P450, family 81, subfamily K, polypeptide 2", cytochrome P450, family 81, subfamily K, polypeptide 2 (.1) AT5G10610 371 / 1e-123 CYP81K1 "cytochrome P450, family 81, subfamily K, polypeptide 1", cytochrome P450, family 81, subfamily K, polypeptide 1 (.1) AT4G37360 359 / 7e-119 CYP81D2 "cytochrome P450, family 81, subfamily D, polypeptide 2", cytochrome P450, family 81, subfamily D, polypeptide 2 (.1) AT4G37340 358 / 2e-118 CYP81D3 "cytochrome P450, family 81, subfamily D, polypeptide 3", cytochrome P450, family 81, subfamily D, polypeptide 3 (.1) AT4G37370 356 / 7e-118 CYP81D8 "cytochrome P450, family 81, subfamily D, polypeptide 8", cytochrome P450, family 81, subfamily D, polypeptide 8 (.1) AT4G37330 356 / 8e-118 CYP81D4 "cytochrome P450, family 81, subfamily D, polypeptide 4", cytochrome P450, family 81, subfamily D, polypeptide 4 (.1) AT5G36220 353 / 2e-116 CYP91A1, CYP81D1 CYTOCHROME P450 91A1, cytochrome P450, family 81, subfamily D, polypeptide 1, cytochrome p450 81d1 (.1) AT4G37320 346 / 6e-114 CYP81D5 "cytochrome P450, family 81, subfamily D, polypeptide 5", cytochrome P450, family 81, subfamily D, polypeptide 5 (.1) AT4G37310 344 / 6e-113 CYP81H1 "cytochrome P450, family 81, subfamily H, polypeptide 1", cytochrome P450, family 81, subfamily H, polypeptide 1 (.1) AT3G28740 343 / 2e-112 CYP81D11, CYP81D1 cytochrome P450, family 81, subfamily D, polypeptide 11, Cytochrome P450 superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G028100 [exp] 972 / 0 AT5G10610 374 / 2e-124 "cytochrome P450, family 81, subfamily K, polypeptide 1", cytochrome P450, family 81, subfamily K, polypeptide 1 (.1) Potri.017G028450 [exp] 971 / 0 AT5G10600 374 / 2e-124 "cytochrome P450, family 81, subfamily K, polypeptide 2", cytochrome P450, family 81, subfamily K, polypeptide 2 (.1) Potri.017G028200 [exp] 970 / 0 AT5G10600 374 / 2e-124 "cytochrome P450, family 81, subfamily K, polypeptide 2", cytochrome P450, family 81, subfamily K, polypeptide 2 (.1) Potri.017G023850 [exp] 896 / 0 AT5G10610 361 / 7e-120 "cytochrome P450, family 81, subfamily K, polypeptide 1", cytochrome P450, family 81, subfamily K, polypeptide 1 (.1) Potri.014G021700 [exp] 496 / 2e-172 AT5G10600 436 / 7e-149 "cytochrome P450, family 81, subfamily K, polypeptide 2", cytochrome P450, family 81, subfamily K, polypeptide 2 (.1) Potri.014G021400 [exp] 439 / 4e-150 AT5G10600 437 / 2e-149 "cytochrome P450, family 81, subfamily K, polypeptide 2", cytochrome P450, family 81, subfamily K, polypeptide 2 (.1) Potri.002G121900 [exp] 429 / 6e-146 AT5G10600 490 / 5e-170 "cytochrome P450, family 81, subfamily K, polypeptide 2", cytochrome P450, family 81, subfamily K, polypeptide 2 (.1) Potri.002G121400 [exp] 384 / 2e-128 AT4G37370 470 / 1e-162 "cytochrome P450, family 81, subfamily D, polypeptide 8", cytochrome P450, family 81, subfamily D, polypeptide 8 (.1) Potri.002G121200 [exp] 377 / 1e-125 AT4G37340 465 / 1e-160 "cytochrome P450, family 81, subfamily D, polypeptide 3", cytochrome P450, family 81, subfamily D, polypeptide 3 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009909 [exp] 398 / 7e-134 AT5G10600 481 / 2e-166 "cytochrome P450, family 81, subfamily K, polypeptide 2", cytochrome P450, family 81, subfamily K, polypeptide 2 (.1) Lus10020437 [exp] 367 / 1e-121 AT4G37370 630 / 0.0 "cytochrome P450, family 81, subfamily D, polypeptide 8", cytochrome P450, family 81, subfamily D, polypeptide 8 (.1) Lus10018717 [exp] 366 / 3e-121 AT4G37370 533 / 0.0 "cytochrome P450, family 81, subfamily D, polypeptide 8", cytochrome P450, family 81, subfamily D, polypeptide 8 (.1) Lus10024816 [exp] 349 / 1e-114 AT4G37370 506 / 2e-176 "cytochrome P450, family 81, subfamily D, polypeptide 8", cytochrome P450, family 81, subfamily D, polypeptide 8 (.1) Lus10024819 [exp] 347 / 5e-114 AT4G37320 493 / 3e-171 "cytochrome P450, family 81, subfamily D, polypeptide 5", cytochrome P450, family 81, subfamily D, polypeptide 5 (.1) Lus10011958 [exp] 343 / 9e-113 AT5G36220 548 / 0.0 CYTOCHROME P450 91A1, cytochrome P450, family 81, subfamily D, polypeptide 1, cytochrome p450 81d1 (.1) Lus10024818 [exp] 328 / 1e-106 AT4G37320 480 / 2e-166 "cytochrome P450, family 81, subfamily D, polypeptide 5", cytochrome P450, family 81, subfamily D, polypeptide 5 (.1) Lus10024820 [exp] 327 / 3e-106 AT5G36220 493 / 2e-171 CYTOCHROME P450 91A1, cytochrome P450, family 81, subfamily D, polypeptide 1, cytochrome p450 81d1 (.1) Lus10018711 [exp] 310 / 1e-99 AT4G37370 441 / 5e-151 "cytochrome P450, family 81, subfamily D, polypeptide 8", cytochrome P450, family 81, subfamily D, polypeptide 8 (.1) Lus10027614 [exp] 302 / 1e-97 AT4G37370 496 / 6e-174 "cytochrome P450, family 81, subfamily D, polypeptide 8", cytochrome P450, family 81, subfamily D, polypeptide 8 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00067 [poplar] [flax] p450 Cytochrome P450
Representative CDS sequence Show only first row Show all	>Potri.017G028150.1 pacid=42814557 polypeptide=Potri.017G028150.1.p locus=Potri.017G028150 ID=Potri.017G028150.1.v4.1 annot-version=v4.1 ATGCTTACAAAGAATTTGTTCTTCACCATGAACTACATGTACTACTGCCTTGCTTTCTTCCTCTCTAGCTTTCTTGTATTCAAACTTGTATTCCAACGTT CCCGCAACTTACCACCAAGTCCTTTCGGTTTTCCGATCATAGGCCATCTCCACCTTGTCTCGAAGCCACCAATGCATAAAGTGCTAGCAATTCTTTCAAA TAAATGCGGTCCAGTTTTTACTCTTAAATTAGGCAGCAGGAACATTGTTGCTGTTTGTTCTTTATCAGCTGCTGAAGAATGTTACATCAAGAATGATATA GTTTTTGCCAACAGGCCTCAGAGCATATTTGTCCATTATTGGAGCTACAACTACGCTGCCTTTTTATTTGCTCCGTATGGCCATCTCTGGCGGACCCTGA GGCGTTTCTCGGTCACTGAACTGTTTTCTCGAAGCTGCCTCGATCGGTCTGCTGCCATTACCGAAGAAGTCCGCACCCTTGTCCGCCTGATTCTGTCCAA AGTCTCTGATGATGGAGCCAAGAAGGTGGACTTGAACTATTTCTTCACAATCACCTCTCTCAATGTAATTATGAAGATGAATGCTGGAAAGAAGTGGGTG GAAGAGGAGAAAGCTGCCTGTATCGATTCAGGAAAGCAGTGTATTGAGGATGTCCAAAAGATATTCCCTTCAAATCCAGGGACCCCCTTGTTGGATTTTT TTCCATTTTTGAAATGGTTTGGGTACAGGGGGGAGGAGGAGAGTGTGATAAAGGTGTACAAAGAGAGGGATGAATTCTTGCAGGGCTTGATAGAAGAGGT GAAACGAAAGGAAACAAGTTCAGTTACAAGTAATCCTGCTGAAGGAGTGAAGGATCAGACAACTGTGATTGGAAGTCTATTGGCCCTCCAAAAATCAGAC CCTGAATTGTATACGGATGAAGTTGTCAAGGGTACCATGGCGACACTCTATTTGGCAGGAGTGGATACAGTAGATTTCACTACGGAATGGGCAATGACAT TTCTGCTGAACCATCCAGAGAGATTAGAGAGGGTGAAAGCGGAGATTGACAGGGAAGTCGGACATGAGCGCTTGGTACAAGAGTCTGATCTTCCCAAGCT AAGATATGTCCGTTGTGTCGTTAATGAGACCCTTCGTTTGTATCCTCCAGCCCCACTTTTGCTGCCTCACGCACCATCTGAAGACTGCATCATAGGTGGA TACAAGATACCACGAGGCACGATTGTGATGGTGAATGCATGGGCCATACATAGGGATCCCAAGTTGTGGGAAGATCCTGAGAGCTTCAAGCCGGAGAGAT TTGAAGGTCTTAATAATGAAGGGGAAAAACAAGGATTCATCCCTTTCGGTATTGGGAGAAGGGCTTGCCCTGGAAATCACATGGCCATGCGCAGAGTGAT GTTGGCATTGGCTGCGCTTATTCAGTGCTTTGAATGGGAAAGAGTCGGGAAGGAACTGGTAGATATGAGCATCGTAGATGCTCTTATCTCTGTACAAAAG GCTAAGCCTTTGGAGGCTATTTGTACTCCTCGTCCTTTCACAACTACTCTCATCTCTCCACCCTAA
AA sequence Show only first row Show all	>Potri.017G028150.1 pacid=42814557 polypeptide=Potri.017G028150.1.p locus=Potri.017G028150 ID=Potri.017G028150.1.v4.1 annot-version=v4.1 MLTKNLFFTMNYMYYCLAFFLSSFLVFKLVFQRSRNLPPSPFGFPIIGHLHLVSKPPMHKVLAILSNKCGPVFTLKLGSRNIVAVCSLSAAEECYIKNDI VFANRPQSIFVHYWSYNYAAFLFAPYGHLWRTLRRFSVTELFSRSCLDRSAAITEEVRTLVRLILSKVSDDGAKKVDLNYFFTITSLNVIMKMNAGKKWV EEEKAACIDSGKQCIEDVQKIFPSNPGTPLLDFFPFLKWFGYRGEEESVIKVYKERDEFLQGLIEEVKRKETSSVTSNPAEGVKDQTTVIGSLLALQKSD PELYTDEVVKGTMATLYLAGVDTVDFTTEWAMTFLLNHPERLERVKAEIDREVGHERLVQESDLPKLRYVRCVVNETLRLYPPAPLLLPHAPSEDCIIGG YKIPRGTIVMVNAWAIHRDPKLWEDPESFKPERFEGLNNEGEKQGFIPFGIGRRACPGNHMAMRRVMLALAALIQCFEWERVGKELVDMSIVDALISVQK AKPLEAICTPRPFTTTLISPP

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G10600		CYP81K2	"cytochrome P450, family 81, s...		Potri.017G028150 [exp]	0	1
AT5G10600		CYP81K2	"cytochrome P450, family 81, s...		Potri.017G028200 [exp]	1.00	0.9991	CYP81R2v2,IFS1.55
AT5G10610		CYP81K1	"cytochrome P450, family 81, s...		Potri.017G028100 [exp]	1.41	0.9990
AT5G10600		CYP81K2	"cytochrome P450, family 81, s...		Potri.017G028450 [exp]	2.44	0.9976
AT5G10610		CYP81K1	"cytochrome P450, family 81, s...		Potri.017G023850 [exp]	3.16	0.9529
AT2G36830		TIP1;1, GAMMA-T...	TONOPLAST INTRINSIC PROTEIN 1;...		Potri.009G005400 [exp]	3.46	0.9539
AT3G63170			Chalcone-flavanone isomerase f...		Potri.002G052200 [exp]	3.74	0.9265
AT3G21690			MATE efflux family protein (.1...		Potri.011G002500 [exp]	6.00	0.8955
AT1G48910		YUC10	YUCCA 10, Flavin-containing mo...		Potri.002G207400 [exp]	6.92	0.8817
AT2G44050		COS1	coronatine insensitive1 suppre...		Potri.007G146000 [exp]	8.36	0.8757
AT2G48020			Major facilitator superfamily ...		Potri.014G136600 [exp]	8.77	0.8821

Compare expression of checked genes

Potri.017G028150 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.