Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	Pt-STH.1
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G31380 273 / 3e-93 CO STH salt tolerance homologue (.1) AT1G06040 273 / 9e-93 CO BBX24, STO SALT TOLERANCE, B-box domain protein 24, B-box zinc finger family protein (.1.2) AT1G78600 144 / 6e-42 CO BBX22, DBB3, STH3, LZF1 SALT TOLERANCE HOMOLOG 3, DOUBLE B-BOX 3, B-box domain protein 22, light-regulated zinc finger protein 1 (.1.2) AT4G10240 127 / 9e-37 CO B-box zinc finger family protein (.1) AT1G75540 130 / 4e-36 CO LHUS, AtBBX21, STH2 long hypocotyl under shade, B-box domain protein 21, B BOX 21, salt tolerance homolog2 (.1) AT4G39070 126 / 1e-35 CO B-box zinc finger family protein (.1) AT2G21320 90 / 2e-22 CO B-box zinc finger family protein (.1) AT4G38960 90 / 3e-22 CO B-box type zinc finger family protein (.1.2.3) AT5G15850 83 / 2e-18 CO COL1, ATCOL1 CONSTANS-like 1 (.1) AT2G24790 82 / 3e-18 CO COL3, ATCOL3 CONSTANS-like 3 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G028301 [exp] 448 / 3e-162 AT1G06040 274 / 3e-93 SALT TOLERANCE, B-box domain protein 24, B-box zinc finger family protein (.1.2) Potri.007G130100 [exp] 377 / 3e-134 AT1G06040 264 / 1e-89 SALT TOLERANCE, B-box domain protein 24, B-box zinc finger family protein (.1.2) Potri.011G105400 [exp] 148 / 3e-43 AT1G78600 284 / 1e-95 SALT TOLERANCE HOMOLOG 3, DOUBLE B-BOX 3, B-box domain protein 22, light-regulated zinc finger protein 1 (.1.2) Potri.001G384000 [exp] 146 / 1e-42 AT1G78600 284 / 1e-95 SALT TOLERANCE HOMOLOG 3, DOUBLE B-BOX 3, B-box domain protein 22, light-regulated zinc finger protein 1 (.1.2) Potri.002G028200 [exp] 143 / 3e-41 AT1G75540 252 / 2e-82 long hypocotyl under shade, B-box domain protein 21, B BOX 21, salt tolerance homolog2 (.1) Potri.005G234500 [exp] 140 / 5e-40 AT1G75540 185 / 2e-56 long hypocotyl under shade, B-box domain protein 21, B BOX 21, salt tolerance homolog2 (.1) Potri.004G161000 [exp] 136 / 7e-40 AT4G39070 192 / 6e-62 B-box zinc finger family protein (.1) Potri.009G122000 [exp] 131 / 1e-37 AT4G39070 202 / 1e-65 B-box zinc finger family protein (.1) Potri.004G162600 [exp] 89 / 1e-21 AT4G38960 248 / 1e-84 B-box type zinc finger family protein (.1.2.3)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027041 [exp] 304 / 4e-105 AT1G06040 298 / 1e-102 SALT TOLERANCE, B-box domain protein 24, B-box zinc finger family protein (.1.2) Lus10025579 [exp] 301 / 6e-104 AT1G06040 297 / 2e-102 SALT TOLERANCE, B-box domain protein 24, B-box zinc finger family protein (.1.2) Lus10038147 [exp] 144 / 1e-41 AT1G78600 281 / 2e-94 SALT TOLERANCE HOMOLOG 3, DOUBLE B-BOX 3, B-box domain protein 22, light-regulated zinc finger protein 1 (.1.2) Lus10042498 [exp] 144 / 2e-41 AT1G78600 274 / 1e-91 SALT TOLERANCE HOMOLOG 3, DOUBLE B-BOX 3, B-box domain protein 22, light-regulated zinc finger protein 1 (.1.2) Lus10028791 [exp] 138 / 3e-40 AT1G75540 206 / 9e-66 long hypocotyl under shade, B-box domain protein 21, B BOX 21, salt tolerance homolog2 (.1) Lus10017495 [exp] 131 / 1e-37 AT1G75540 202 / 2e-64 long hypocotyl under shade, B-box domain protein 21, B BOX 21, salt tolerance homolog2 (.1) Lus10031087 [exp] 89 / 2e-21 AT4G38960 229 / 5e-77 B-box type zinc finger family protein (.1.2.3) Lus10035472 [exp] 88 / 4e-21 AT4G38960 229 / 4e-77 B-box type zinc finger family protein (.1.2.3) Lus10018076 [exp] 87 / 8e-21 AT4G38960 215 / 6e-72 B-box type zinc finger family protein (.1.2.3) Lus10020105 [exp] 82 / 8e-18 AT5G24930 398 / 6e-138 CONSTANS-like 4 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00643 [poplar] [flax] zf-B_box B-box zinc finger
Representative CDS sequence Show only first row Show all	>Potri.017G028300.1 pacid=42814035 polypeptide=Potri.017G028300.1.p locus=Potri.017G028300 ID=Potri.017G028300.1.v4.1 annot-version=v4.1 ATGAAGATTCAGTGTGATGTGTGTGAGAAAGCACCCGCCACAGTGATTTGTTGTGCTGATGAGGCTGCACTTTGTGCTAAATGTGACATAGAAGTTCATG CAGCAAACAAGCTTGCTAGCAAGCACCAAAGGCTTCTTCTCCAGTGCCTCTCCAACAAGCTGCCTCCATGTGATATATGCCAAGAGAAGGCAGCTTTCAT TTTCTGTGTTGAAGACAGGGCCCTCTTTTGCCGGGATTGTGATGAACCAATCCATTCAGCTGGTAGCCTTTCTGCGAATCACCAGCGGTTTCTGGCCACT GGAATCCGAGTGGCTTTAAGCTCGAGTTGCTCCAAGGACACGCAGACGAATTCTTCAGGGCCACCAAATCAGAGCGCACAGCAAACTCCCATGAAAATCC CTGCACAGCAAACATCGAGCTTCGCCACTTCATGGGCAGTTGATGACTTGCTACAGTTTTCCGAGTTTGAATCATCCACTGACAAGAAAGAGCAACTTGA GTTAGGAGAGTTTGAGTGGCTAGCTGACATGGGTCTTTTCGGTGAGCAACTTCCTCAAGAAGCTCTAGCAGCAGCTGAAGTTCCTCAACTGCCAATCTCA CCACCAACCAATGTGAACTCATGCAGACCCACCAAATCCAGCATGCCCCATAAGAAGCCTAGAATTGAAATCTCAGACGATGAGGACGAGTACTTAACTG TGCCTGATCTTGGCTGA
AA sequence Show only first row Show all	>Potri.017G028300.1 pacid=42814035 polypeptide=Potri.017G028300.1.p locus=Potri.017G028300 ID=Potri.017G028300.1.v4.1 annot-version=v4.1 MKIQCDVCEKAPATVICCADEAALCAKCDIEVHAANKLASKHQRLLLQCLSNKLPPCDICQEKAAFIFCVEDRALFCRDCDEPIHSAGSLSANHQRFLAT GIRVALSSSCSKDTQTNSSGPPNQSAQQTPMKIPAQQTSSFATSWAVDDLLQFSEFESSTDKKEQLELGEFEWLADMGLFGEQLPQEALAAAEVPQLPIS PPTNVNSCRPTKSSMPHKKPRIEISDDEDEYLTVPDLG

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G31380	CO	STH	salt tolerance homologue (.1)		Potri.017G028300 [exp]	0	1	Pt-STH.1
AT1G06040	CO	BBX24, STO	SALT TOLERANCE, B-box domain p...		Potri.017G028301 [exp]	1.00	0.9980
AT3G56140			Protein of unknown function (D...		Potri.008G074300 [exp]	4.00	0.9494
AT3G17040		HCF107	high chlorophyll fluorescent 1...		Potri.010G145000 [exp]	5.91	0.9513
AT5G07900			Mitochondrial transcription te...		Potri.001G035200 [exp]	10.95	0.9554
AT5G14870		ATCNGC18	cyclic nucleotide-gated channe...		Potri.013G108200 [exp]	12.00	0.9389
AT5G24314		PDE225, PTAC7	PIGMENT DEFECTIVE 225, plastid...		Potri.015G010700 [exp]	12.32	0.9517
AT2G33450			Ribosomal L28 family (.1)		Potri.010G068500 [exp]	16.61	0.9525
AT2G13360		SGAT, AGT1, AGT	L-serine:glyoxylate aminotrans...		Potri.001G253300 [exp]	17.14	0.9509	Pt-AGT.2
AT2G04700			ferredoxin thioredoxin reducta...		Potri.001G350900 [exp]	22.91	0.9500
AT4G24930			thylakoid lumenal 17.9 kDa pro...		Potri.015G097700 [exp]	23.55	0.9404

Compare expression of checked genes

Potri.017G028300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.