Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G30890 402 / 3e-143 Integral membrane HRF1 family protein (.1.2) AT3G59500 402 / 6e-143 Integral membrane HRF1 family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G028500 [exp] 462 / 1e-166 AT1G30890 402 / 3e-143 Integral membrane HRF1 family protein (.1.2) Potri.007G129900 [exp] 444 / 2e-159 AT1G30890 380 / 2e-134 Integral membrane HRF1 family protein (.1.2) Potri.014G175900 [exp] 345 / 6e-121 AT3G59500 378 / 5e-134 Integral membrane HRF1 family protein (.1) Potri.001G327700 [exp] 61 / 1e-11 AT1G30890 53 / 2e-09 Integral membrane HRF1 family protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027039 [exp] 422 / 5e-151 AT1G30890 469 / 2e-169 Integral membrane HRF1 family protein (.1.2) Lus10025577 [exp] 419 / 8e-150 AT1G30890 466 / 2e-168 Integral membrane HRF1 family protein (.1.2) Lus10008752 [exp] 355 / 2e-124 AT3G59500 392 / 4e-139 Integral membrane HRF1 family protein (.1) Lus10007418 [exp] 301 / 1e-103 AT1G30890 345 / 2e-121 Integral membrane HRF1 family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0112 [poplar] [flax] Yip1 PF03878 [poplar] [flax] YIF1 YIF1
Representative CDS sequence Show only first row Show all	>Potri.017G028425.1 pacid=42814615 polypeptide=Potri.017G028425.1.p locus=Potri.017G028425 ID=Potri.017G028425.1.v4.1 annot-version=v4.1 ATGTATAACAATGTGGGACCTCAGCCTGGGGTGCCAAGACCTCCAACCAACCCCCAGCCCAATCCATTTGGGAATTCCTTCTACGGAGCTGGTTCAGGAC TTATGAAAGGTGGGCTGGGTGCATATGGAGAGAAAATTTTGGGCTCAAGTTCTGAGTATGTACAAAGCAATATAAGTAGATACTTCTCTGATCCACAGTA CTATTTCCAAGTGAATGACCAGTATGTGAGGAACAAACTGAAGGTTGTTTTGTTTCCATTTCTGCACAGGGGACATTGGATGAGGATAACCGAGCCAGTA GGGGGCAGGCTTTCCTATAAACCCCCAATCTATGATATAAATGCACCAGACTTGTACATTCCATTCATGGCATTTGGTACCTATGTTGTTCTTGCTGGCT TGTCGTTGGGACTTAATGGAAAATTTAGCCCAGAAGCTCTCAATTGGCTGTTTGTCAAGGGATTGCTCGGCTGGTTTATGCAGGTTGCATTGCTCAAAAT GATACTCCTTTCATTGGGTAGCGGGGAGGCGCCCTTGTTAGACATTGTTGCATATGCTGGGTATACCTTCACAGGCATGTGTTTTGCTGTCCTTGGAAAG ATCTTATCTGGATACTCTTACTACATTTTGATGCCATGTGCCTGCTTATGCATGGGAATTTTCTTGGTGAAGACAATGAAGAGAGTACTTTTTGCAGAGG TGAGGAGCTTTGATTCTAGCAGACACCATTTTCTCTTGCTCCTCATCGCTTTGGTTCAGTTCCCATTTTTCGCATGGCTTGGCAATGTTAGTGTCAATTG GTTTCTCTAA
AA sequence Show only first row Show all	>Potri.017G028425.1 pacid=42814615 polypeptide=Potri.017G028425.1.p locus=Potri.017G028425 ID=Potri.017G028425.1.v4.1 annot-version=v4.1 MYNNVGPQPGVPRPPTNPQPNPFGNSFYGAGSGLMKGGLGAYGEKILGSSSEYVQSNISRYFSDPQYYFQVNDQYVRNKLKVVLFPFLHRGHWMRITEPV GGRLSYKPPIYDINAPDLYIPFMAFGTYVVLAGLSLGLNGKFSPEALNWLFVKGLLGWFMQVALLKMILLSLGSGEAPLLDIVAYAGYTFTGMCFAVLGK ILSGYSYYILMPCACLCMGIFLVKTMKRVLFAEVRSFDSSRHHFLLLLIALVQFPFFAWLGNVSVNWFL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G30890			Integral membrane HRF1 family ...		Potri.017G028425 [exp]	0	1
AT5G09900		RPN5A, MSA, EMB...	REGULATORY PARTICLE NON-ATPASE...		Potri.007G076900 [exp]	6.48	0.8910
AT2G37060	CCAAT	NF-YB8	"nuclear factor Y, subunit B8"...		Potri.010G216600 [exp]	10.48	0.8759
AT4G18040		LSP1, CUM1, AT....	eukaryotic translation Initiat...		Potri.011G077200 [exp]	12.00	0.8666	EIF4.2
AT1G78870		UBC35 ,UBC13A	UBIQUITIN CONJUGATING ENZYME 1...		Potri.011G111400 [exp]	13.19	0.8887
AT5G60860		AtRABA1f	RAB GTPase homolog A1F (.1)		Potri.013G123600 [exp]	18.92	0.8909	Pt-RAB11.8
AT2G03120		ATSPP	signal peptide peptidase (.1)		Potri.009G071600 [exp]	22.09	0.8794
AT2G27020		PAG1	20S proteasome alpha subunit G...		Potri.009G020800 [exp]	23.74	0.8806	PAG1.2
AT5G23250			Succinyl-CoA ligase, alpha sub...		Potri.015G028200 [exp]	27.49	0.8795
AT2G33040		ATP3	gamma subunit of Mt ATP syntha...		Potri.015G057700 [exp]	28.28	0.8711	Pt-ATPC.2
AT5G60860		AtRABA1f	RAB GTPase homolog A1F (.1)		Potri.019G092500 [exp]	30.06	0.8884	RAB11.11

Compare expression of checked genes

Potri.017G028425 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.