Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G59510 372 / 1e-126 Leucine-rich repeat (LRR) family protein (.1) AT2G15320 194 / 5e-58 Leucine-rich repeat (LRR) family protein (.1) AT5G66330 194 / 1e-57 Leucine-rich repeat (LRR) family protein (.1) AT4G03010 144 / 8e-39 RNI-like superfamily protein (.1) AT1G03440 132 / 1e-34 Leucine-rich repeat (LRR) family protein (.1) AT2G33170 126 / 3e-31 Leucine-rich repeat receptor-like protein kinase family protein (.1) AT1G75640 125 / 6e-31 Leucine-rich receptor-like protein kinase family protein (.1) AT3G49670 125 / 9e-31 BAM2 BARELY ANY MERISTEM 2, Leucine-rich receptor-like protein kinase family protein (.1) AT3G28890 124 / 1e-30 AtRLP43 receptor like protein 43 (.1.2) AT3G11080 124 / 2e-30 AtRLP35 receptor like protein 35 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G028400 [exp] 736 / 0 AT3G59510 366 / 6e-124 Leucine-rich repeat (LRR) family protein (.1) Potri.017G028325 [exp] 243 / 1e-79 AT3G59510 129 / 7e-36 Leucine-rich repeat (LRR) family protein (.1) Potri.005G234400 [exp] 219 / 4e-67 AT5G66330 412 / 3e-142 Leucine-rich repeat (LRR) family protein (.1) Potri.001G301400 [exp] 209 / 1e-63 AT2G15320 429 / 6e-150 Leucine-rich repeat (LRR) family protein (.1) Potri.009G097100 [exp] 207 / 7e-63 AT2G15320 473 / 2e-167 Leucine-rich repeat (LRR) family protein (.1) Potri.007G016800 [exp] 208 / 8e-63 AT5G66330 480 / 8e-169 Leucine-rich repeat (LRR) family protein (.1) Potri.005G117800 [exp] 204 / 2e-61 AT5G66330 506 / 2e-179 Leucine-rich repeat (LRR) family protein (.1) Potri.011G104600 [exp] 137 / 6e-35 AT2G15080 421 / 5e-129 receptor like protein 19 (.1.2) Potri.018G045500 [exp] 133 / 2e-33 AT2G25790 925 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019356 [exp] 445 / 2e-155 AT3G59510 377 / 1e-128 Leucine-rich repeat (LRR) family protein (.1) Lus10007417 [exp] 438 / 1e-152 AT3G59510 379 / 2e-129 Leucine-rich repeat (LRR) family protein (.1) Lus10025578 [exp] 422 / 1e-146 AT3G59510 388 / 6e-133 Leucine-rich repeat (LRR) family protein (.1) Lus10027040 [exp] 209 / 9e-66 AT3G59510 199 / 5e-62 Leucine-rich repeat (LRR) family protein (.1) Lus10028359 [exp] 157 / 7e-44 AT5G66330 423 / 5e-147 Leucine-rich repeat (LRR) family protein (.1) Lus10002822 [exp] 146 / 6e-40 AT2G15320 379 / 1e-130 Leucine-rich repeat (LRR) family protein (.1) Lus10008190 [exp] 140 / 2e-37 AT1G03440 576 / 0.0 Leucine-rich repeat (LRR) family protein (.1) Lus10029622 [exp] 131 / 4e-34 AT1G03440 534 / 0.0 Leucine-rich repeat (LRR) family protein (.1) Lus10031601 [exp] 130 / 8e-34 AT1G03440 463 / 2e-163 Leucine-rich repeat (LRR) family protein (.1) Lus10036251 [exp] 133 / 3e-33 AT4G20140 1495 / 0.0 GASSHO1, Leucine-rich repeat transmembrane protein kinase (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0022 [poplar] [flax] LRR PF00560 [poplar] [flax] LRR_1 Leucine Rich Repeat CL0022 [poplar] [flax] LRR PF13855 [poplar] [flax] LRR_8 Leucine rich repeat
Representative CDS sequence Show only first row Show all	>Potri.017G028600.1 pacid=42814435 polypeptide=Potri.017G028600.1.p locus=Potri.017G028600 ID=Potri.017G028600.1.v4.1 annot-version=v4.1 ATGGCCAAACAAATGCGCTCCCTCCTTTCTTCTTGCTTGCTTTCTGTCACTGTATCCATAGTTCTACTCCATATACCATCTCGAGTTCATTCAGTAACAT TGAAATCAGATGTTGAAGCCCTTCAGGCACTGATGCAGGCCGTCGATCCCGTCTCGATTGTGAGGTATTCCTACCTCCATAGCTGGGATTTCGCATTCGA TCCATGTGAGGCTGCAGGGTTATTTCAAGGGATCGTGTGCACATTCCCTACGGACAATTCGGCCAACCGTATAATGGCAATTGATCTTGATCCTGCTGGG TATGATGGCTTTCTAACAGCATCGATCGGGAATCTGACAGAGCTTACCTCCCTTAGGATAAGCAAAAACAACTTTCGAGGGCCAATACCAGAAACCATAG CCAACCTTCAAAAGCTCACCAGACTATCATTGACTCAAAATCTCTTCACTGGGAGAATACCTCAAGGAATCATTAATCTCAAGCATCTTCAAATCTTAGA CCTGTCACAAAACCACCTCTCTAGCAAAATTCCTGCCGATATTACAACTTTGAGAAGCTTGGTGCAGTTAAGCTTGTCAAACAATGCATTGTCTGGCAGA ATTCCAGACCTCTCCGCATTGTGGCAGCTGAGCACATTGGATCTTAGTAGCAACAATCTAGATGGAATTGTGCCCAATCTTCCAATGAACTTGAGAAAAT TGTCGCTGAGCCATAATGTACTATCAGGACACGTTTCACCTGTGAGCGTCCTCCAACACCTCACAGTACTAGATTTGAGTGATAACAGGTTTTCAGGTCT CATTCGTCAGGAAATTCTCACTTTGCCTCTGGTGGAACGCCTTAACATCTCAAATAATCAATTCACGGAAATGGAGCCATTGCCATACCCTAGGGAAGGT TTACAGCTTCGTGTGCTGGACGCACACGCTAACAGGCTGCATGGTCATCTGCCCATCAGCTTGGTTAATATAGCGAATTTATCATCAATTGATCTATCCC ATAATCATTTCTCTGGACGAATCCCACTAGAATATGGAGCCAAACTGGGGAGTTCATGGAAAAGCTTGCTCTTAGAAGACAATTTTCTGATAGGAAATCT TCCACCGCAGTTTATTAACGGGACAGTGGCAGTTAGAGCCAACCTTGCACACAATTGCTTAAGGTGTCCACCAAACATTCGGTTTTGCAGAGGAGGGCAA AGGGCAAACTCAGAGTGTGACGGGCAGCAAGATCACAGCACTTGA
AA sequence Show only first row Show all	>Potri.017G028600.1 pacid=42814435 polypeptide=Potri.017G028600.1.p locus=Potri.017G028600 ID=Potri.017G028600.1.v4.1 annot-version=v4.1 MAKQMRSLLSSCLLSVTVSIVLLHIPSRVHSVTLKSDVEALQALMQAVDPVSIVRYSYLHSWDFAFDPCEAAGLFQGIVCTFPTDNSANRIMAIDLDPAG YDGFLTASIGNLTELTSLRISKNNFRGPIPETIANLQKLTRLSLTQNLFTGRIPQGIINLKHLQILDLSQNHLSSKIPADITTLRSLVQLSLSNNALSGR IPDLSALWQLSTLDLSSNNLDGIVPNLPMNLRKLSLSHNVLSGHVSPVSVLQHLTVLDLSDNRFSGLIRQEILTLPLVERLNISNNQFTEMEPLPYPREG LQLRVLDAHANRLHGHLPISLVNIANLSSIDLSHNHFSGRIPLEYGAKLGSSWKSLLLEDNFLIGNLPPQFINGTVAVRANLAHNCLRCPPNIRFCRGGQ RANSECDGQQDHST

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G59510			Leucine-rich repeat (LRR) fami...		Potri.017G028600 [exp]	0	1
AT4G31320			SAUR-like auxin-responsive pro...		Potri.013G054600 [exp]	69.94	0.6503	SAUR9
AT1G24520		BCP1	homolog of Brassica campestris...		Potri.008G182400 [exp]	132.32	0.6752
AT1G48430			Dihydroxyacetone kinase (.1)		Potri.012G041100 [exp]	145.47	0.6428
					Potri.003G025350 [exp]	169.53	0.6648

Compare expression of checked genes

Potri.017G028600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.