Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	NS1.2
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G17300 888 / 0 ATNS1, NS1, OVA8 ovule abortion 8, Class II aminoacyl-tRNA and biotin synthetases superfamily protein (.1) AT1G70980 477 / 3e-163 SYNC3, SYNC1 Class II aminoacyl-tRNA and biotin synthetases superfamily protein (.1) AT5G56680 473 / 9e-162 SYNC1ARATH, SYNC1, EMB2755 EMBRYO DEFECTIVE 2755, Class II aminoacyl-tRNA and biotin synthetases superfamily protein (.1) AT3G07420 338 / 1e-108 ATNS2, SYNC2_ARATH, NS2 SYNTHETASE C2, asparaginyl-tRNA synthetase 2 (.1) AT4G26870 115 / 4e-27 Class II aminoacyl-tRNA and biotin synthetases superfamily protein (.1) AT4G31180 104 / 2e-23 Class II aminoacyl-tRNA and biotin synthetases superfamily protein (.1.2) AT1G68420 92 / 1e-22 Class II aaRS and biotin synthetases superfamily protein (.1) AT5G38750 56 / 2e-09 asparaginyl-tRNA synthetase family (.1) AT4G33760 44 / 0.0004 tRNA synthetase class II (D, K and N) family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G129800 [exp] 1090 / 0 AT4G17300 872 / 0.0 ovule abortion 8, Class II aminoacyl-tRNA and biotin synthetases superfamily protein (.1) Potri.006G153900 [exp] 487 / 5e-167 AT5G56680 929 / 0.0 EMBRYO DEFECTIVE 2755, Class II aminoacyl-tRNA and biotin synthetases superfamily protein (.1) Potri.018G070000 [exp] 484 / 4e-166 AT5G56680 931 / 0.0 EMBRYO DEFECTIVE 2755, Class II aminoacyl-tRNA and biotin synthetases superfamily protein (.1) Potri.002G249700 [exp] 336 / 9e-107 AT3G07420 654 / 0.0 SYNTHETASE C2, asparaginyl-tRNA synthetase 2 (.1) Potri.006G085400 [exp] 112 / 7e-26 AT4G31180 709 / 0.0 Class II aminoacyl-tRNA and biotin synthetases superfamily protein (.1.2) Potri.001G289001 [exp] 44 / 0.0003 AT4G33760 998 / 0.0 tRNA synthetase class II (D, K and N) family protein (.1) Potri.009G084300 [exp] 43 / 0.0006 AT4G33760 1004 / 0.0 tRNA synthetase class II (D, K and N) family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007470 [exp] 900 / 0 AT4G17300 873 / 0.0 ovule abortion 8, Class II aminoacyl-tRNA and biotin synthetases superfamily protein (.1) Lus10028945 [exp] 749 / 0 AT4G17300 740 / 0.0 ovule abortion 8, Class II aminoacyl-tRNA and biotin synthetases superfamily protein (.1) Lus10032704 [exp] 478 / 1e-163 AT5G56680 907 / 0.0 EMBRYO DEFECTIVE 2755, Class II aminoacyl-tRNA and biotin synthetases superfamily protein (.1) Lus10012920 [exp] 409 / 3e-137 AT5G56680 799 / 0.0 EMBRYO DEFECTIVE 2755, Class II aminoacyl-tRNA and biotin synthetases superfamily protein (.1) Lus10038228 [exp] 258 / 5e-81 AT3G07420 353 / 7e-118 SYNTHETASE C2, asparaginyl-tRNA synthetase 2 (.1) Lus10025874 [exp] 262 / 7e-79 AT3G07420 604 / 0.0 SYNTHETASE C2, asparaginyl-tRNA synthetase 2 (.1) Lus10008180 [exp] 186 / 1e-55 AT5G56680 268 / 2e-87 EMBRYO DEFECTIVE 2755, Class II aminoacyl-tRNA and biotin synthetases superfamily protein (.1) Lus10018862 [exp] 124 / 4e-30 AT4G31180 667 / 0.0 Class II aminoacyl-tRNA and biotin synthetases superfamily protein (.1.2) Lus10028555 [exp] 121 / 1e-29 AT4G31180 606 / 0.0 Class II aminoacyl-tRNA and biotin synthetases superfamily protein (.1.2) Lus10028557 [exp] 71 / 4e-14 AT4G31180 235 / 8e-76 Class II aminoacyl-tRNA and biotin synthetases superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0040 [poplar] [flax] tRNA_synt_II PF00152 [poplar] [flax] tRNA-synt_2 tRNA synthetases class II (D, K and N)
Representative CDS sequence Show only first row Show all	>Potri.017G028800.6 pacid=42813564 polypeptide=Potri.017G028800.6.p locus=Potri.017G028800 ID=Potri.017G028800.6.v4.1 annot-version=v4.1 ATGGCAATTTCTGCGCTAGGACCAGCTACATCGCTCCGGTTAACCCCAGGGTCAACTCTCCGGTTGCTATCCTTCTACTCCAAATCAAACCCTAGTAACC TGTCTGGTATCCTCAAAACAATAACGAAACCTCATGCCATACCTCCAAAGTTCCACCATCTATTGCAACTTTCAGGTTTGCCTTGTCGGAGGTTCTTCTG CAGTGTAATTTCTGGAGCTCTACAGTCTAGCGAGAGTGCAAAAGTAGAGAAGAAGGGTGAAATTGGGAATAGAGTTGGAGAATTTAGAAGGAAGTTGAAG ATTGCTGATATAAAGGGTGGTCCAGATGAAGGGTTGGATCGTGTAGGGAAGACCATCATTGTAATGGGTTGGGTACGTACACTTCGAGTTCAAAGTAGTG TTACTTTTATTGAGGTTAATGATGGTTCATGCCTGTCAAACTTGCAATGTGTAATGGACTTGGAGGCTGAAGGTTATGATCAGGTAGAATCTGGCTTGGT AACAACTGGCGCGTCAATATGGATGCAAGGAACTGTGGTGAAGAGCCAAGGGTCAAAACAAAAGGTGGAACTGAAGGTCATCAAAATAGTAGCGGTTGGC AAGAGTGATCCTTCCTATCCCATCCAAAAGAAAAGGGTTAGTAGAGAATTTTTGAGAACTAAGGCTCACCTTCGTCCTCGAACAAATACATTTGGTGCGG TTGCAAGGGTGAGGAATGCTTTGGCATATGCCACTCACAAGTTTTTTCAAGAAAATGGGTTTGTTTGGGTCTCAAGTCCTATTATTACAGCTTCAGATTG TGAAGGGGCCGGTGAACAGTTCTGTGTGACTACTTTGATTCCAGGTTCTCAAGAAGCTGCCAATTCTCCGGTGGATGGGATTCCAAAAACAAAGGATGGG TTAATTGATTGGTCACAGGACTTTTTTGGCAAACCAGCTTTTCTGACGGTCTCTGGCCAGCTCAATGCTGAAACATATGCCACTGCTCTTTCGGATGTAT ATACATTTGGTCCCACGTTTCGAGCTGAAAATTCTAACACTTCTAGGCACTTGGCTGAATTTTGGATGATTGAACCAGAACTTGCATTTGCTGATCTGAA TGACGACATGGCCTGCGCCACTGCCTATCTCCAGTATGTAGTGAGACATATCCTTGAAAACTGCAAGGAAGACATGGAATTTTTCAATACTTGGATTGAG AAGGGAATCATTGATCGATTGAGTGATGTGGTTGAGAAAGACTTTGTTCAGTTGACTTACACTGATGCAATTGAACTTCTTCTGAAAGCAAAAAAGAAGT TTGAATTCCCGTTGGAATGGGGATGTGATTTGCAAAGCGAGCATGAGCGATACATAACTGAAGAGGTATTTGGTGGGTGCCCTGTCATCATCAGAGATTA TCCAAAGGACATCAAAGCATTTTATATGCGGCAAAATGATGATGGTAAGACTGTTGCTGCCATGGATATGCTGGTTCCTCGGGTTGGTGAGCTTATTGGT GGAAGCCAAAGAGAAGAACGGCTGGAATATATAGAAGACCGTTTAGATGAGCTAAAGCTGAACAAGGAGAGCTTCTGGTGGTATCTTGATTTGCGCCGTT ATGGTTCAGTTCCTCATGCAGGTTTTGGACTGGGTTTTGAAAGGCTCGTTCAATTTGCTACAGGAATAGACAATATAAGAGATGCAATACCTTTCCCTCG GGTACCTGGTTCGGCTGAATTTTAA
AA sequence Show only first row Show all	>Potri.017G028800.6 pacid=42813564 polypeptide=Potri.017G028800.6.p locus=Potri.017G028800 ID=Potri.017G028800.6.v4.1 annot-version=v4.1 MAISALGPATSLRLTPGSTLRLLSFYSKSNPSNLSGILKTITKPHAIPPKFHHLLQLSGLPCRRFFCSVISGALQSSESAKVEKKGEIGNRVGEFRRKLK IADIKGGPDEGLDRVGKTIIVMGWVRTLRVQSSVTFIEVNDGSCLSNLQCVMDLEAEGYDQVESGLVTTGASIWMQGTVVKSQGSKQKVELKVIKIVAVG KSDPSYPIQKKRVSREFLRTKAHLRPRTNTFGAVARVRNALAYATHKFFQENGFVWVSSPIITASDCEGAGEQFCVTTLIPGSQEAANSPVDGIPKTKDG LIDWSQDFFGKPAFLTVSGQLNAETYATALSDVYTFGPTFRAENSNTSRHLAEFWMIEPELAFADLNDDMACATAYLQYVVRHILENCKEDMEFFNTWIE KGIIDRLSDVVEKDFVQLTYTDAIELLLKAKKKFEFPLEWGCDLQSEHERYITEEVFGGCPVIIRDYPKDIKAFYMRQNDDGKTVAAMDMLVPRVGELIG GSQREERLEYIEDRLDELKLNKESFWWYLDLRRYGSVPHAGFGLGFERLVQFATGIDNIRDAIPFPRVPGSAEF

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G17300		ATNS1, NS1, OVA...	ovule abortion 8, Class II ami...		Potri.017G028800 [exp]	0	1	NS1.2
AT3G29320		PHS1	alpha-glucan phosphorylase 1, ...		Potri.010G160200 [exp]	1.41	0.9493
AT5G38510			Rhomboid-related intramembrane...		Potri.017G112900 [exp]	2.82	0.9489
AT3G56040		UGP3	UDP-glucose pyrophosphorylase ...		Potri.010G185800 [exp]	3.87	0.9464
					Potri.006G164050 [exp]	3.87	0.9483
AT1G08070		EMB3102, OTP82	ORGANELLE TRANSCRIPT PROCESSIN...		Potri.013G103600 [exp]	5.29	0.9481
AT4G28080			Tetratricopeptide repeat (TPR)...		Potri.018G102500 [exp]	6.48	0.9436
AT4G15440		CYP74B2, HPL1	hydroperoxide lyase 1 (.1)		Potri.014G155800 [exp]	8.12	0.9449	HPL1.1
AT5G48830			unknown protein		Potri.002G241200 [exp]	8.77	0.9373
AT3G22104			Phototropic-responsive NPH3 fa...		Potri.017G041600 [exp]	9.16	0.9239
AT3G59400		GUN4	GENOMES UNCOUPLED 4, enzyme bi...		Potri.017G030100 [exp]	10.95	0.9303

Compare expression of checked genes

Potri.017G028800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.