Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G59480 568 / 0 pfkB-like carbohydrate kinase family protein (.1) AT1G06020 555 / 0 pfkB-like carbohydrate kinase family protein (.1) AT1G06030 551 / 0 pfkB-like carbohydrate kinase family protein (.1) AT2G31390 550 / 0 STH pfkB-like carbohydrate kinase family protein (.1) AT4G10260 456 / 8e-162 pfkB-like carbohydrate kinase family protein (.1) AT1G66430 434 / 2e-152 pfkB-like carbohydrate kinase family protein (.1) AT5G51830 412 / 5e-144 pfkB-like carbohydrate kinase family protein (.1) AT1G50390 220 / 1e-71 pfkB-like carbohydrate kinase family protein (.1) AT3G54090 179 / 4e-52 FLN1 fructokinase-like 1 (.1) AT1G69200 158 / 3e-43 FLN2 fructokinase-like 2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G129700 [exp] 610 / 0 AT3G59480 559 / 0.0 pfkB-like carbohydrate kinase family protein (.1) Potri.004G089300 [exp] 447 / 2e-157 AT1G66430 527 / 0.0 pfkB-like carbohydrate kinase family protein (.1) Potri.019G063600 [exp] 444 / 5e-157 AT4G10260 550 / 0.0 pfkB-like carbohydrate kinase family protein (.1) Potri.012G132700 [exp] 426 / 2e-149 AT5G51830 460 / 1e-163 pfkB-like carbohydrate kinase family protein (.1) Potri.015G134900 [exp] 422 / 5e-148 AT5G51830 456 / 1e-161 pfkB-like carbohydrate kinase family protein (.1) Potri.017G126300 [exp] 422 / 2e-147 AT1G66430 519 / 0.0 pfkB-like carbohydrate kinase family protein (.1) Potri.008G097300 [exp] 169 / 4e-47 AT1G69200 598 / 0.0 fructokinase-like 2 (.1) Potri.016G109600 [exp] 162 / 1e-45 AT3G54090 630 / 0.0 fructokinase-like 1 (.1) Potri.011G114100 [exp] 80 / 3e-16 AT1G17160 474 / 8e-168 pfkB-like carbohydrate kinase family protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013611 [exp] 577 / 0 AT3G59480 559 / 0.0 pfkB-like carbohydrate kinase family protein (.1) Lus10026865 [exp] 571 / 0 AT3G59480 560 / 0.0 pfkB-like carbohydrate kinase family protein (.1) Lus10009526 [exp] 567 / 0 AT2G31390 553 / 0.0 pfkB-like carbohydrate kinase family protein (.1) Lus10020346 [exp] 451 / 1e-160 AT3G59480 441 / 8e-158 pfkB-like carbohydrate kinase family protein (.1) Lus10027401 [exp] 430 / 3e-151 AT5G51830 535 / 0.0 pfkB-like carbohydrate kinase family protein (.1) Lus10040562 [exp] 426 / 5e-150 AT4G10260 539 / 0.0 pfkB-like carbohydrate kinase family protein (.1) Lus10031668 [exp] 419 / 1e-146 AT5G51830 522 / 0.0 pfkB-like carbohydrate kinase family protein (.1) Lus10009126 [exp] 412 / 2e-143 AT1G66430 582 / 0.0 pfkB-like carbohydrate kinase family protein (.1) Lus10028517 [exp] 408 / 8e-142 AT1G66430 575 / 0.0 pfkB-like carbohydrate kinase family protein (.1) Lus10028089 [exp] 367 / 4e-127 AT4G10260 452 / 1e-161 pfkB-like carbohydrate kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0118 [poplar] [flax] Ribokinase PF00294 [poplar] [flax] PfkB pfkB family carbohydrate kinase
Representative CDS sequence Show only first row Show all	>Potri.017G029000.4 pacid=42814491 polypeptide=Potri.017G029000.4.p locus=Potri.017G029000 ID=Potri.017G029000.4.v4.1 annot-version=v4.1 ATGAACCTCTCTTCCCTTCCCAACTCTCTCTCTCTCCCTCTCCCTCTCCCTGCCATTCCCTCCTTTGCTTTCTCTATCCAGAAAACACACAACTCTCTTT CTCGTCCCTCACGTTCTCTTGCAATGGCTTCCAATGGAGTGAACGACAAGTCACTGATCGTCAGCTTCGGGGAGATGCTGATAGACTTCGTCCCGACGGT CTCTGGCGTCTCCCTCGCTGAAGCTCCGGGGTTTGTGAAGGCACCGGGTGGTGCTCCGGCGAACGTGGCGATAGCGGTGGCGAGGCTGGGAGGAAAGGCG GCATTTGTTGGAAAACTTGGTGATGATGAGTTCGGCAACATGCTCGCCGGAATTTTGAAGGAAAACGGCGTGATCGCTACTGGGATAAATTTTGACACAG GTGCTAGGACTGCTCTCGCGTTTGTTACTCTACGCGCTGATGGAGAGCGTGAGTTTATGTTTTATAGAAATCCAAGTGCTGATATGTTACTAAGGCCAGA AGAGTTAAATCTTGAGTTAATTAGATCTGCTAAGGTTTTCCACTACGGATCAATAAGTTTGATTGTGGAGCCCTGCAGATCAGCACATTTACAGGCAATG AGGGTGGCGAAGGATGCAGGTGCATTGCTTTCGTATGACCCAAATCTGAGGCTGCCATTGTGGCCATCAGCAGAGGAGGCGCGTGAGCAGATATTGAGCA TCTGGGACGAGGCAGATGTGGTCAAAGTCAGTGATAATGAGCTTGAGTTCCTCACTGGAAGTGACAAAATTGATGATGAAACTGCTATGTCACTCTGGCG TCCTAACTTTAAGTTGCTCTTGGTCACTCTTGGTGAAAAGGGTTGCAATTATTACACCAAGAATTTCCATGGATCAGTTGAGGCTTTCCATGTGGACACT GTTGATACCACAGGTGCTGGTGATTCATTTGTTGGTGCTCTCCTTTGCAAGATTGTTGACGACCAATCTGTGCTTGAGGATGAGCCAAGGCTGAGAGAGA TACTTAGATTTGCAAATGCTTGTGGAGCCATTACAACCACCAAAAAGGGAGCAATCCCTGCTCTGCCTACTCCGGCCGATGCCCTCAAACTGGTGAAAGA AGGAAAATAA
AA sequence Show only first row Show all	>Potri.017G029000.4 pacid=42814491 polypeptide=Potri.017G029000.4.p locus=Potri.017G029000 ID=Potri.017G029000.4.v4.1 annot-version=v4.1 MNLSSLPNSLSLPLPLPAIPSFAFSIQKTHNSLSRPSRSLAMASNGVNDKSLIVSFGEMLIDFVPTVSGVSLAEAPGFVKAPGGAPANVAIAVARLGGKA AFVGKLGDDEFGNMLAGILKENGVIATGINFDTGARTALAFVTLRADGEREFMFYRNPSADMLLRPEELNLELIRSAKVFHYGSISLIVEPCRSAHLQAM RVAKDAGALLSYDPNLRLPLWPSAEEAREQILSIWDEADVVKVSDNELEFLTGSDKIDDETAMSLWRPNFKLLLVTLGEKGCNYYTKNFHGSVEAFHVDT VDTTGAGDSFVGALLCKIVDDQSVLEDEPRLREILRFANACGAITTTKKGAIPALPTPADALKLVKEGK

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G59480			pfkB-like carbohydrate kinase ...		Potri.017G029000 [exp]	0	1
AT3G43190		ATSUS4, SUS4	ARABIDOPSIS THALIANA SUCROSE S...		Potri.006G136700 [exp]	1.00	0.9755	Pt-SUS1.1
AT5G19780		TUA5	tubulin alpha-5 (.1)		Potri.019G036000 [exp]	1.41	0.9609	TUA8,TUA1.1
AT1G12000			Phosphofructokinase family pro...		Potri.011G015900 [exp]	3.87	0.9609
AT5G17920		ATCIMS, ATMETS,...	methionine synthesis 1, COBALA...		Potri.004G190900 [exp]	5.29	0.9429
AT1G12000			Phosphofructokinase family pro...		Potri.006G281900 [exp]	5.29	0.9528
AT2G35020		GlcNAc1pUT2	N-acetylglucosamine-1-phosphat...		Potri.003G074700 [exp]	6.70	0.9492
AT4G28550			Ypt/Rab-GAP domain of gyp1p su...		Potri.005G227400 [exp]	6.92	0.9300
AT1G53290			Galactosyltransferase family p...		Potri.001G392700 [exp]	7.48	0.9360
AT5G12250		TUB6	beta-6 tubulin (.1)		Potri.009G067100 [exp]	9.48	0.9454
AT2G03200			Eukaryotic aspartyl protease f...		Potri.001G306200 [exp]	9.48	0.9356

Compare expression of checked genes

Potri.017G029000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.