Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G24430 251 / 4e-79 HXXXD-type acyl-transferase family protein (.1) AT3G26040 247 / 4e-77 HXXXD-type acyl-transferase family protein (.1) AT3G30280 211 / 1e-63 HXXXD-type acyl-transferase family protein (.1) AT1G24420 206 / 9e-62 HXXXD-type acyl-transferase family protein (.1) AT5G47950 204 / 5e-61 HXXXD-type acyl-transferase family protein (.1) AT4G15390 195 / 2e-57 HXXXD-type acyl-transferase family protein (.1) AT5G23970 189 / 4e-55 HXXXD-type acyl-transferase family protein (.1) AT5G47980 176 / 4e-50 HXXXD-type acyl-transferase family protein (.1) AT4G15400 149 / 4e-40 HXXXD-type acyl-transferase family protein (.1) AT5G48930 119 / 2e-29 HCT hydroxycinnamoyl-CoA shikimate/quinate hydroxycinnamoyl transferase (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G127000 [exp] 359 / 4e-121 AT3G26040 241 / 6e-75 HXXXD-type acyl-transferase family protein (.1) Potri.006G036100 [exp] 355 / 1e-119 AT3G26040 250 / 2e-78 HXXXD-type acyl-transferase family protein (.1) Potri.015G126600 [exp] 349 / 3e-117 AT3G26040 264 / 5e-84 HXXXD-type acyl-transferase family protein (.1) Potri.001G310000 [exp] 350 / 4e-117 AT3G26040 249 / 5e-78 HXXXD-type acyl-transferase family protein (.1) Potri.004G017600 [exp] 347 / 2e-116 AT3G26040 257 / 4e-81 HXXXD-type acyl-transferase family protein (.1) Potri.005G028200 [exp] 347 / 2e-116 AT3G26040 232 / 1e-71 HXXXD-type acyl-transferase family protein (.1) Potri.019G001200 [exp] 340 / 2e-113 AT3G26040 236 / 6e-73 HXXXD-type acyl-transferase family protein (.1) Potri.019G001400 [exp] 323 / 7e-107 AT3G26040 223 / 6e-68 HXXXD-type acyl-transferase family protein (.1) Potri.010G053800 [exp] 258 / 9e-82 AT1G24430 425 / 6e-147 HXXXD-type acyl-transferase family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030751 [exp] 227 / 2e-69 AT3G26040 297 / 2e-96 HXXXD-type acyl-transferase family protein (.1) Lus10013231 [exp] 212 / 1e-63 AT3G26040 291 / 5e-94 HXXXD-type acyl-transferase family protein (.1) Lus10019183 [exp] 210 / 6e-63 AT3G26040 265 / 3e-84 HXXXD-type acyl-transferase family protein (.1) Lus10036819 [exp] 202 / 7e-60 AT3G26040 256 / 1e-80 HXXXD-type acyl-transferase family protein (.1) Lus10036929 [exp] 201 / 9e-58 AT3G26040 319 / 1e-102 HXXXD-type acyl-transferase family protein (.1) Lus10017469 [exp] 194 / 9e-57 AT1G24430 224 / 3e-68 HXXXD-type acyl-transferase family protein (.1) Lus10035932 [exp] 192 / 3e-56 AT1G24430 224 / 3e-68 HXXXD-type acyl-transferase family protein (.1) Lus10036043 [exp] 191 / 7e-56 AT3G26040 205 / 4e-61 HXXXD-type acyl-transferase family protein (.1) Lus10023214 [exp] 186 / 9e-54 AT3G26040 218 / 7e-66 HXXXD-type acyl-transferase family protein (.1) Lus10017925 [exp] 186 / 9e-54 AT3G26040 264 / 1e-83 HXXXD-type acyl-transferase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0149 [poplar] [flax] CoA-acyltrans PF02458 [poplar] [flax] Transferase Transferase family
Representative CDS sequence Show only first row Show all	>Potri.017G029300.1 pacid=42814550 polypeptide=Potri.017G029300.1.p locus=Potri.017G029300 ID=Potri.017G029300.1.v4.1 annot-version=v4.1 ATGAGGGTTGAAATTGTTTCCAGGAAATTCATTACTCCATCATCTTCAACCCCACCTCAACTTAGAAGCTGCGAAATATCGGCCTTGGATCAGCTTCTTC CTCCAGTTTATGTAGGATTAACATATTTTTACGCGGCTGACGAAAACATTCAAGGAGCCAAGCATTCCGAAAGAGGAAAGCAGTTGGAGGAATCATTATC CAAAATCTTAACCCTCTACTATCCGGTGGCAGGGAGATATGATGAAGAAAAGCTGTTGATCGATTGCAACGATAAAGGGGTAGAATATTTGGAAGCTGAA GTAAGTGGACGACTCTCTCAAATTTTAAATGGGGAGTTGCAGCCTGAGCAGTTGAATCAGTTTCTTCCGTATCCTGTTGCATCACCCACAAGTCCATTAG TATCTGTGCAAGTAAGCACTTTCGAGTGCGGTGGACTGGCTGTCGGCTTGCGCATTTCACACAAGATATGTGATGCAGCGACATTAACCTCATTTGTCAA TGGATGGGCAACAACAAGTCGAGTTGGTATTGATGAAGTGCCCCGACCGAGTTTTGCTCTGCCATCCCTCTTTCCGACAAGAGAGACAACTCAAATCCTG AAAGCAACTCCGGTTAAAAATGGAGCTAGGGTCGTGACAAGAACTTTTGTGTTTAGCAGGTCTGCAGTAGCCAACCTGCAAGTGATTGCCAGAACAAGAG ATGATGATTTGGAAGGAGGGAAAGGCCAACCTTCGCGAGTCCAAGTAGTGACCGCAGTTGTATGGAGGGCTCTGATTAAGGTGGCTAAACTTAAGCATGG ATACCTGAGGCCATCTGCCTTAATTCATGGAGTGGAAATGAGAAAGAGGTCAGCATTACCACTACCACCAAATTGCTTCGGAAACATGTTGAGGGTTTCG ATGGCTCGATTTGAGGCAGACGAGAGCAAAATGGGGTTGCCTGACCTGGTCATTCCGGTAAGGCAGGCGATAAGGGATGCCGTTTCGGATTGCCGAAACG CAATAAGCTATGATGATTTGTTGTTGGGAGCAGCAGGGAGTTTCAGTGAATGGAATGAGGAAGCAAGTAAAGGTGAGATAGATGTGTATACGTTTACTAG CTGGTGTGGTTTCCCGATTTATGAAATGGATTTTGGCTGGGGGAAGCCTGCATGGGTGAGCAGTCCCCATAAGCCAGTACCAGTGGTGAACTTGCTGGAC ACCAAAGATGGTGGAGTTGAAGTATGGATGACTGCAGAGGAAAAGGGCATGATCCTCTTTCAACAAGACCCTGAGATTATTGCCCTCACTGATTCTCGAT TGAAGAATAATGTCTAA
AA sequence Show only first row Show all	>Potri.017G029300.1 pacid=42814550 polypeptide=Potri.017G029300.1.p locus=Potri.017G029300 ID=Potri.017G029300.1.v4.1 annot-version=v4.1 MRVEIVSRKFITPSSSTPPQLRSCEISALDQLLPPVYVGLTYFYAADENIQGAKHSERGKQLEESLSKILTLYYPVAGRYDEEKLLIDCNDKGVEYLEAE VSGRLSQILNGELQPEQLNQFLPYPVASPTSPLVSVQVSTFECGGLAVGLRISHKICDAATLTSFVNGWATTSRVGIDEVPRPSFALPSLFPTRETTQIL KATPVKNGARVVTRTFVFSRSAVANLQVIARTRDDDLEGGKGQPSRVQVVTAVVWRALIKVAKLKHGYLRPSALIHGVEMRKRSALPLPPNCFGNMLRVS MARFEADESKMGLPDLVIPVRQAIRDAVSDCRNAISYDDLLLGAAGSFSEWNEEASKGEIDVYTFTSWCGFPIYEMDFGWGKPAWVSSPHKPVPVVNLLD TKDGGVEVWMTAEEKGMILFQQDPEIIALTDSRLKNNV

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G24430			HXXXD-type acyl-transferase fa...		Potri.017G029300 [exp]	0	1
AT3G07040		RPS3, RPM1	RESISTANCE TO PSEUDOMONAS SYRI...		Potri.017G106500 [exp]	6.32	0.8387
AT3G03740		ATBPM4	BTB-POZ and MATH domain 4 (.1)		Potri.001G184200 [exp]	8.94	0.8862
AT5G64600			O-fucosyltransferase family pr...		Potri.005G059600 [exp]	14.83	0.8570
AT1G56400			F-box family protein (.1.2)		Potri.011G136200 [exp]	15.96	0.8877
					Potri.017G079901 [exp]	20.78	0.8820
AT3G50930		BCS1	cytochrome BC1 synthesis (.1)		Potri.002G032700 [exp]	24.24	0.8632
AT5G42340		PUB15	Plant U-Box 15 (.1)		Potri.003G214100 [exp]	27.56	0.8204
AT3G45180			Ubiquitin-like superfamily pro...		Potri.004G211600 [exp]	33.46	0.8831
AT1G11900			Tetratricopeptide repeat (TPR)...		Potri.009G067400 [exp]	34.69	0.7999
					Potri.014G170000 [exp]	44.19	0.8729

Compare expression of checked genes

Potri.017G029300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.