Plant FIBer expression Database

Potri.017G029800 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT3G59430 107 / 1e-24 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.007G128500
[exp]
940 / 0 AT3G59430 124 / 1e-30 unknown protein
Flax homologues

No hit found
PFAM info
Representative CDS sequence
>Potri.017G029800.1 pacid=42813022 polypeptide=Potri.017G029800.1.p locus=Potri.017G029800 ID=Potri.017G029800.1.v4.1 annot-version=v4.1
ATGTTAAATAAAGAGAGCGAGGACGGAAAGGAGTATTTTCGCAAACTTTCGAGAAAAGAACTTCAAAGTTTGTGTAAGCAATGTAGTTTGCCTGCTAGAA
AATCAACTTCCGAAATGGTCGAATCGCTTGCGTTTTACTTTATGAGGAAGGGTTTGAGTTTGGTATCATCTAGCACAAGCATAGTTGGGGTTCAAAATGC
TTTACTTCATACGTCTTCGATGCCACCATTGCAGCCTAAGCCTGCATTAAATTCAATACAAGATGGTTTTGAACTCAGATCTTGTCCCGGAGAGGAGATT
AACAAAGGGAATAGAAATTTCAAATACAATAAATCGGAAAGTTTTATTGGGCCTGGAGCTTATAATAAGGAAATCTTTGGTGGCTTAATTAATGATTTTC
GAGAGGTATCTCCATCTCAGTTTTTTTCTCAATATGCTGGGAGTCATGTCAACCATAATAAGCCCCAATTAAGCCTTGGTGGCAGGGTAGAAGATTCGCC
CCCATTTCATGGTACAGATGTAAATACTATAGCCAGTTCTGAAGAGAATGCCCAGCCTTCTATGAAAACTACTGCAAATGTCCCAGCATCTTTTGAATTT
CATGTCAGTTCGGAAGAGGGAATTAAACTTTGTGTTGATCTGAATTCAAGCCCATCAGAGTGGATTAAGAAATATAAAAATCAAGTTTCTTTGTGCGACA
ATGTGGTTAATACTAAGTCTCGGAGTCTTTATCAAGAGCTTGGGTGTATTGGAGAGAGTAATAAGAAAATGAAAAGTTCTGTTCTTCAGAATATGGATTC
TGACCAAATCAGGGATGACTTTGTGCAAACTGATCCTTCTCCAAGTTCAGTTGCAGGAAAAAATATTAATGTGAGTAATGGTCATCCAGTTGGAGGTAAT
AATTCCCTAATCTCATCACCCATAATACCTTGTGGTGTAGTTGTAGATGTTACGCAATCCTTGGAGGCGGATCCAGGACTTGCCTCAGCCGAACCCAGTT
CTGATGGGCAGAACCAGAAAACTTCGAACACTGAATCCTGTAGCAAAAAGGAGAGCATCGCTGCCCCTGATTCAGATATCACTGACACTACGTTAGAAAA
GACAGCCTGCAATTTTGCTGTAAACTCCATCTCCAACGGTTCTGTAGATTGTATTGCATTGATGCATCAGAGTTCAAAGCGTGATGATGAAGTTTGTGAG
AATTCAACCCAGCAGAACAGTTGTAATCTTGAGAATGCTAGTGTTGTATTCCCTGGATGCTTTATGGAGATGCAGTTATCAGAAACTGGAAATTATCCCA
AAGATGCATCATGTTTACCTCATAAAAATGGCAAATTCTTGGATCCATATAATTCAAAGCACAATAGAGGATCTGAGCAGGATGGATTAGCCAACTCAAG
TGAGAACAATCGTTGCGATAACCAGGTGCCCGCATGCTCCGAAGAGCAGGAATGGAGCAATGCTATCAGTGGCAGGGAGAGTTCAGTATGCTCGCAGGTT
GATGACTCATTTGGTAAGACTTCTTTGAAGTCTGAAATTCTCAGATCAAGTGAAGAACTCCTTAGAAAGAGGTCACATGTAGACAGGGCGAGTCAAAATG
GCTGTGGCAAGCATGACACAATAATTTTAAGAAGCACAAGGCGCTCTGCTGGAAAGGTCCTTCCTAGAAGATCCATGAGTGAGTTCGCGTTCTATATGCT
GCCTGCATCGCAACAATTGGATTGA
AA sequence
>Potri.017G029800.1 pacid=42813022 polypeptide=Potri.017G029800.1.p locus=Potri.017G029800 ID=Potri.017G029800.1.v4.1 annot-version=v4.1
MLNKESEDGKEYFRKLSRKELQSLCKQCSLPARKSTSEMVESLAFYFMRKGLSLVSSSTSIVGVQNALLHTSSMPPLQPKPALNSIQDGFELRSCPGEEI
NKGNRNFKYNKSESFIGPGAYNKEIFGGLINDFREVSPSQFFSQYAGSHVNHNKPQLSLGGRVEDSPPFHGTDVNTIASSEENAQPSMKTTANVPASFEF
HVSSEEGIKLCVDLNSSPSEWIKKYKNQVSLCDNVVNTKSRSLYQELGCIGESNKKMKSSVLQNMDSDQIRDDFVQTDPSPSSVAGKNINVSNGHPVGGN
NSLISSPIIPCGVVVDVTQSLEADPGLASAEPSSDGQNQKTSNTESCSKKESIAAPDSDITDTTLEKTACNFAVNSISNGSVDCIALMHQSSKRDDEVCE
NSTQQNSCNLENASVVFPGCFMEMQLSETGNYPKDASCLPHKNGKFLDPYNSKHNRGSEQDGLANSSENNRCDNQVPACSEEQEWSNAISGRESSVCSQV
DDSFGKTSLKSEILRSSEELLRKRSHVDRASQNGCGKHDTIILRSTRRSAGKVLPRRSMSEFAFYMLPASQQLD

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT3G59430 unknown protein Potri.017G029800
[exp]
0 1
AT4G08500 ARAKIN, ATMEKK1... MAPK/ERK kinase kinase 1 (.1) Potri.005G172200
[exp]
1.73 0.8158 MEKK1.1
AT3G61760 ADL1B DYNAMIN-like 1B (.1) Potri.002G171200
[exp]
3.16 0.7977
AT2G40090 ATATH9 ABC2 homolog 9 (.1) Potri.008G067900
[exp]
4.69 0.7640 Pt-ATH9.2
AT1G34190 NAC ANAC017 NAC domain containing protein ... Potri.002G061300
[exp]
9.79 0.8121
AT5G04410 NAC NAC2, ANAC078 Arabidopsis NAC domain contain... Potri.008G031800
[exp]
10.58 0.7810 NAC047,NAC2.2
AT4G23180 RLK4, CRK10 cysteine-rich RLK (RECEPTOR-li... Potri.012G055500
[exp]
10.81 0.8025
AT1G68580 agenet domain-containing prote... Potri.010G126700
[exp]
11.40 0.7663
AT2G21120 Protein of unknown function (D... Potri.004G168900
[exp]
12.36 0.7148
AT4G04885 PCFS4 PCF11P-similar protein 4 (.1) Potri.017G017800
[exp]
12.80 0.7979
AT5G20660 Zn-dependent exopeptidases sup... Potri.008G039400
[exp]
15.96 0.6915

Potri.017G029800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.