Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	Pt-ACR4.2
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G59420 1264 / 0 ACR4 crinkly4 (.1) AT3G09780 348 / 6e-107 CCR1, ATCRR1 CRINKLY4 related 1 (.1) AT2G39180 324 / 1e-97 CCR2, ATCRR2 CRINKLY4 related 2 (.1) AT5G47850 314 / 2e-94 CCR4 CRINKLY4 related 4 (.1) AT3G55950 262 / 6e-75 CCR3, ATCRR3 CRINKLY4 related 3 (.1) AT3G58690 249 / 4e-74 Protein kinase superfamily protein (.1) AT5G28680 258 / 3e-73 ANX2 ANXUR2, Malectin/receptor-like protein kinase family protein (.1) AT5G02800 245 / 4e-73 CDL1 CDG1-like 1, Protein kinase superfamily protein (.1) AT3G04690 258 / 5e-73 ANX1 ANXUR1, Malectin/receptor-like protein kinase family protein (.1) AT3G07070 246 / 9e-73 Protein kinase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G128400 [exp] 1675 / 0 AT3G59420 1264 / 0.0 crinkly4 (.1) Potri.010G221200 [exp] 379 / 1e-118 AT2G39180 899 / 0.0 CRINKLY4 related 2 (.1) Potri.016G089200 [exp] 376 / 2e-117 AT3G09780 946 / 0.0 CRINKLY4 related 1 (.1) Potri.013G103300 [exp] 280 / 1e-81 AT5G47850 649 / 0.0 CRINKLY4 related 4 (.1) Potri.019G078300 [exp] 279 / 4e-81 AT5G47850 699 / 0.0 CRINKLY4 related 4 (.1) Potri.010G188600 [exp] 267 / 1e-76 AT3G55950 791 / 0.0 CRINKLY4 related 3 (.1) Potri.008G068700 [exp] 266 / 4e-76 AT3G55950 786 / 0.0 CRINKLY4 related 3 (.1) Potri.001G252400 [exp] 263 / 2e-75 AT3G55950 692 / 0.0 CRINKLY4 related 3 (.1) Potri.001G260800 [exp] 252 / 4e-75 AT3G51990 419 / 5e-146 Protein kinase superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015956 [exp] 1377 / 0 AT3G59420 1258 / 0.0 crinkly4 (.1) Lus10000764 [exp] 1375 / 0 AT3G59420 1255 / 0.0 crinkly4 (.1) Lus10041404 [exp] 333 / 5e-101 AT2G39180 849 / 0.0 CRINKLY4 related 2 (.1) Lus10036524 [exp] 331 / 2e-100 AT2G39180 848 / 0.0 CRINKLY4 related 2 (.1) Lus10029170 [exp] 325 / 6e-98 AT5G47850 678 / 0.0 CRINKLY4 related 4 (.1) Lus10012995 [exp] 254 / 6e-78 AT5G47850 372 / 9e-125 CRINKLY4 related 4 (.1) Lus10038595 [exp] 250 / 1e-74 AT5G54380 718 / 0.0 THESEUS1, protein kinase family protein (.1) Lus10016371 [exp] 251 / 7e-74 AT3G51990 402 / 3e-138 Protein kinase superfamily protein (.1) Lus10040663 [exp] 256 / 7e-73 AT3G55950 642 / 0.0 CRINKLY4 related 3 (.1) Lus10028285 [exp] 254 / 4e-72 AT3G55950 734 / 0.0 CRINKLY4 related 3 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF07714 [poplar] [flax] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase
Representative CDS sequence Show only first row Show all	>Potri.017G029900.1 pacid=42812996 polypeptide=Potri.017G029900.1.p locus=Potri.017G029900 ID=Potri.017G029900.1.v4.1 annot-version=v4.1 ATGGGGAATTGGAGCCATTCTGTTGGAGATTTCCTTATTAGGGTCTTGATGACTAGCAAATGGAATTGTGGATTTGTGGTTCAATTTGTGGTTCTATCAG ATTTATGGTGGCTAGTCTCAGGTTTAGGCTCCATGTCTTCCATTGCCATTTCTTATGGTGAGAAAGGTCCTGCCTTTTGTGGTATAAAATCAGATGGGTC TCATCTTGTGAATTGTTATGGTTCAAATTCAGCTATAATCCATGAAACTCCAGCTTATTTTCATTTCATTGGTCTAACTGCTGGAGATGGCTTTGTTTGT GGGCTTCTGTTGGAATCTAACCGACCGTATTGTTGGGGAAGTAGTGGCTATCTTCGACCAGGTGTGCCTCAGCCTATGATGGAAGAGGCTGAGTATGTTG AAATCAGTGCTGGTGATTACCATTTATGTGGTTTGAGAAAGCCTTTAACAGGCAGGCGTAGAAACCTTTCTCTTATTGACTGTTGGGGTTACAACATGAC AAGGAACCATGTGTTTGATGGGCAGATTCAATCAATCTCAGCTGGTTCTGACTTCAATTGTGGATTGTTTTCTGAGAATAGGACTGTTTTCTGCTGGGGT GATCAGGCTAGCAGCCGTGTAATCAGCTTGGTTCCTCAAGAAATGAGATTTCAAAAGATTGCAGCTGGTGGATATCATGTTTGTGGGATTCTAGAGGGGG TGAATTCAAGAGCCTTCTGTTGGGGAAGGAGCTTGGACCTTGAAGAAGAGATTTCTGTGATATCAGCAGCATATGTGAATCAAGGAAATGTTGATTTGCC TCCGAGTGATCCTATGCTGTCTGTTGTTGGAGGAAAGTTCCATGCTTGTGGAATCAAGAGTTATAACCGCGAGGTGATTTGTTGGGGCTATATTGTAAAG CCAAGCACTCCGACTCCTACTGGCATTAAGGTCTACGAAATAGCTGCTGGAAATTACTTCACTTGTGGAATTCTTGCCGAGAAATCTCTCGTACCTGTTT GTTGGGGTCTTGGGTTCCCTAGCTCTCTTCCCCTAGCTGTTTCACCTGGACTCTGCAAAACTACTCCTTGCCCTCCCGGTTCCTATGAATTTGTTGGTGC CAGCACACCGTGCACATCTCCAGGCTCTCGTGCTTGCTTGTCTTGCAGTAATGGTTGTCCTGCTGAAATGTACCAGAAAACCAAATGCACTTCGAAATCA GATCGTCAGTGTGATTATAATTGTTCCAGTTGTTATTCATCAGAATGCTTCTCAAACTGTTCTTCTTTATATTCCAATAATGCTAAAGAAAAGAACAGGT TTTGGTCATTGCAATTGCCAGTCATTATTGCGGAGATTGGCTTTGCTATGTTCTTGGTGGTGGTTGTGACGACAACTGCTATTTTGTATGTTCGCTATAG GTTGAGGAACTGTCAATGCTCGGCAAAACAATCAAAGACCAAGAAAAACAGTGGTAGCGGTTCTTCAGTTTCTAAAGATAACGGAAGAATCCGCCCCGAC ATGGATGAGATCAAGTTAAGGAGGGCACAGATGTTCACTTATGAGGAACTTGAGAAGGCCACCAGCGGATTCAAGGAAGAATCCCTAGTGGGAAAAGGAA GTTTCTCGTGTGTTTATAAGGGGGTTTTAAGGAATGGGACACTTGTTGCAGTGAAAAAGGCAATAGTGTGTTCTGATAAGCAGAAAAACTCGAAAGAATT CCACACTGAGCTTGATCTGCTATCAAGACTAAACCATGCTCATTTGCTCAACTTGCTTGGCTATTGTGAAGAAGGTGGAGAAAGGCTTCTGGTTTACGAA TTCATGGCTCATGGATCCTTGCACCAGCATCTTCATGGAAAGAACCCTGCCTTAAAAGAGCAAATGAATTGGGTTCGAAGGGTTACCATTGCAGTACAAG CAGCTAGGGGAATTGAATACTTGCATGGTTACGCTTGCCCACCCGTAATTCATCGAGACATCAAATCTTCAAACATTCTCATTGATGAAGAACACAACGC CAGAGTGTCTGATTTTGGCCTTTCTTTGTTGGGGCCAGCTAATAGTAGCTCACCGTTGGCTGAGCTACCTGCAGGAACTCTTGGCTATCTTGATCCTGAG TACTATAGGCTTCACTACCTCACAACCAAATCCGATGTTTATAGCTTTGGCGTGTTGCTCTTGGAAATCCTCAGTGGCCGAAAGGCCATAGATATGCAAT ACGAAGAAGGAAATATAGTCGAATGGGCAGTTCCCCTGATCAAAGCAGGAGATATATCAGCCATATTGGACCCAGTTTTGAAGCCTCCATCCGATCCTGA AGCTTTGAAAAGGATTGCAAATGTGGCTTGCAAGTGTGTCAGAATGAGGGGGAAGGAAAGGCCATCCATGGATAAAGTAACAACAGCTTTGGAACGTGCC CTTGCACAACTGATGGGCAGTCCAAGTAATGACCAACCAATATTGCCAACCGAAGTTGTTCTTGGAAGCAGTAGATTGCACAAGAAATCTTCTCAAAGAT CTTCAAACCGATCAGCGGTCTCAGAAACTGATGTTGTAGAAGGAGAAGACCAAAGGATCGAGTTTCGAGCGCCATCGTGGATAACTTTTCCTAGTGTTAC TTCCTCTCAAGGGAGAAAGTCTTCAGCCTCCGATGCAGATGTTGATGGTAAAACCTCAACTAGAAATTTAGGCTATGTTGCAAACGTCGGGGATGGGTTG AGGAGTTTGGAGGAAGAGATTGGACCTGCTTCACCTCAAGAAAGATTGTTCTTGCAGCATAACTTCTGA
AA sequence Show only first row Show all	>Potri.017G029900.1 pacid=42812996 polypeptide=Potri.017G029900.1.p locus=Potri.017G029900 ID=Potri.017G029900.1.v4.1 annot-version=v4.1 MGNWSHSVGDFLIRVLMTSKWNCGFVVQFVVLSDLWWLVSGLGSMSSIAISYGEKGPAFCGIKSDGSHLVNCYGSNSAIIHETPAYFHFIGLTAGDGFVC GLLLESNRPYCWGSSGYLRPGVPQPMMEEAEYVEISAGDYHLCGLRKPLTGRRRNLSLIDCWGYNMTRNHVFDGQIQSISAGSDFNCGLFSENRTVFCWG DQASSRVISLVPQEMRFQKIAAGGYHVCGILEGVNSRAFCWGRSLDLEEEISVISAAYVNQGNVDLPPSDPMLSVVGGKFHACGIKSYNREVICWGYIVK PSTPTPTGIKVYEIAAGNYFTCGILAEKSLVPVCWGLGFPSSLPLAVSPGLCKTTPCPPGSYEFVGASTPCTSPGSRACLSCSNGCPAEMYQKTKCTSKS DRQCDYNCSSCYSSECFSNCSSLYSNNAKEKNRFWSLQLPVIIAEIGFAMFLVVVVTTTAILYVRYRLRNCQCSAKQSKTKKNSGSGSSVSKDNGRIRPD MDEIKLRRAQMFTYEELEKATSGFKEESLVGKGSFSCVYKGVLRNGTLVAVKKAIVCSDKQKNSKEFHTELDLLSRLNHAHLLNLLGYCEEGGERLLVYE FMAHGSLHQHLHGKNPALKEQMNWVRRVTIAVQAARGIEYLHGYACPPVIHRDIKSSNILIDEEHNARVSDFGLSLLGPANSSSPLAELPAGTLGYLDPE YYRLHYLTTKSDVYSFGVLLLEILSGRKAIDMQYEEGNIVEWAVPLIKAGDISAILDPVLKPPSDPEALKRIANVACKCVRMRGKERPSMDKVTTALERA LAQLMGSPSNDQPILPTEVVLGSSRLHKKSSQRSSNRSAVSETDVVEGEDQRIEFRAPSWITFPSVTSSQGRKSSASDADVDGKTSTRNLGYVANVGDGL RSLEEEIGPASPQERLFLQHNF

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G59420		ACR4	crinkly4 (.1)		Potri.017G029900 [exp]	0	1	Pt-ACR4.2
AT3G59420		ACR4	crinkly4 (.1)		Potri.007G128400 [exp]	3.16	0.9442	ACR4.3
AT5G62230		ERL1	ERECTA-like 1 (.1.2)		Potri.012G130400 [exp]	3.46	0.9453	ERL1.2
AT5G28300	Trihelix		Duplicated homeodomain-like su...		Potri.013G039100 [exp]	4.00	0.9355
AT2G18360			alpha/beta-Hydrolases superfam...		Potri.004G155800 [exp]	6.92	0.9291
AT1G29740			Leucine-rich repeat transmembr...		Potri.011G073466 [exp]	7.41	0.9311
AT5G46880	HD	HDG5, HB-7	HOMEODOMAIN GLABROUS 5, homeob...		Potri.003G096000 [exp]	7.74	0.9387
					Potri.002G252400 [exp]	7.93	0.9363
AT5G48270			Plant protein of unknown funct...		Potri.010G047700 [exp]	9.16	0.9253
AT3G49900			Phototropic-responsive NPH3 fa...		Potri.005G149400 [exp]	10.67	0.8984
AT4G14550	AUX_IAA	SLR, IAA14	SOLITARY ROOT, indole-3-acetic...		Potri.008G161200 [exp]	12.24	0.9141	IAA14.1

Compare expression of checked genes

Potri.017G029900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.