Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G05970 179 / 3e-57 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033646 [exp] 207 / 4e-68 AT1G05970 204 / 8e-67 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Lus10017690 [exp] 200 / 3e-65 AT1G05970 199 / 5e-65 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0221 [poplar] [flax] RRM PF00076 [poplar] [flax] RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Representative CDS sequence Show only first row Show all	>Potri.017G030000.2 pacid=42814237 polypeptide=Potri.017G030000.2.p locus=Potri.017G030000 ID=Potri.017G030000.2.v4.1 annot-version=v4.1 ATGGATTCTACTTCCACAGCTGAAGCAGACTATGCTGCGTTTCTGGAGAAGGTGAAACGTACTGTTTACATTGACAACCTTTCACCACAAGTGACTGAAT CTGTCATGAGAACAGCTCTAGGTCAGTTTGGGACTGTGAAGAATGTGCAGTTTATCCCGAACTACACAGGACCCAAAAATATCCCATGCTGTGCCTTAGT GGAAATGGAGTGTCTTAGACAAGCCGAAGCTGTTGTTTCAGAGATCACCCAGTTCCCCTTCATGATGTCTGGGATGCCTCGGCCTGCTAGAGCATTTCGT GCAGAAGTGGAGATGTTTGATGATCGCCCAATCAAGCCTGGTAGAAGGATACAGTGCCGTTGGGTGGACAGAAAAGACCCTGATTTTGAAGTGGCAAATA AAATTAAGCGTCTTGTCAGAAAGCATGCTGCTGAAGATTTATTTTTGCTCCAGCAACAGTTGGCCCAAGAAGAGAAGCTTGCAAAGCAGCAAGAGGAAAC CCTCAAAGCAAATTATAAGAAGTTCACCATAATAGATAATGTCGTGTCTGACGGAACTGCTCCTGGTTTGGCAAAGTTTTACAACATGAAGGTTTTCGAT GCTTGA
AA sequence Show only first row Show all	>Potri.017G030000.2 pacid=42814237 polypeptide=Potri.017G030000.2.p locus=Potri.017G030000 ID=Potri.017G030000.2.v4.1 annot-version=v4.1 MDSTSTAEADYAAFLEKVKRTVYIDNLSPQVTESVMRTALGQFGTVKNVQFIPNYTGPKNIPCCALVEMECLRQAEAVVSEITQFPFMMSGMPRPARAFR AEVEMFDDRPIKPGRRIQCRWVDRKDPDFEVANKIKRLVRKHAAEDLFLLQQQLAQEEKLAKQQEETLKANYKKFTIIDNVVSDGTAPGLAKFYNMKVFD A

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G05970			RNA-binding (RRM/RBD/RNP motif...		Potri.017G030000 [exp]	0	1
AT1G20950			Phosphofructokinase family pro...		Potri.006G024500 [exp]	1.00	0.8886
AT1G57540			unknown protein		Potri.005G002900 [exp]	1.41	0.8808
AT4G22220		ATISU1, ISU1	SufE/NifU family protein (.1)		Potri.015G077500 [exp]	2.44	0.8791
AT1G71750		HGPT	Hypoxanthine-guanine phosphori...		Potri.005G198400 [exp]	2.82	0.8756
AT1G05785			Got1/Sft2-like vescicle transp...		Potri.014G151000 [exp]	3.46	0.8624
AT1G68310		AE7	AS1/2 ENHANCER7, Protein of un...		Potri.003G098000 [exp]	4.58	0.8587
AT2G35605			SWIB/MDM2 domain superfamily p...		Potri.005G078400 [exp]	4.69	0.8304
AT1G65032			unknown protein		Potri.005G094100 [exp]	5.19	0.8421
AT1G31340		NEDD8, ATRUB1, ...	ARABIDOPSIS THALIANA RELATED T...		Potri.007G067500 [exp]	7.07	0.8640	Pt-UBQ7.1
AT5G12210		AtRGTB1	RAB geranylgeranyl transferase...		Potri.013G012500 [exp]	7.48	0.8035

Compare expression of checked genes

Potri.017G030000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.