Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G24220 293 / 1e-96 5[beta]-StR, 5[beta]-StR, 5[beta]-StR, 5[beta]-StR, 5[beta]-StR, 5[beta]-StR, AWI31, VEP1 VEIN PATTERNING 1, Δ4,5-steroid-5[beta]-reductase, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) AT5G58750 174 / 1e-50 NAD(P)-binding Rossmann-fold superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G030600 [exp] 652 / 0 AT4G24220 271 / 4e-88 VEIN PATTERNING 1, Δ4,5-steroid-5[beta]-reductase, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Potri.017G030400 [exp] 599 / 0 AT4G24220 249 / 6e-80 VEIN PATTERNING 1, Δ4,5-steroid-5[beta]-reductase, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Potri.014G019500 [exp] 279 / 3e-91 AT4G24220 541 / 0.0 VEIN PATTERNING 1, Δ4,5-steroid-5[beta]-reductase, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Potri.014G019700 [exp] 279 / 4e-91 AT4G24220 556 / 0.0 VEIN PATTERNING 1, Δ4,5-steroid-5[beta]-reductase, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Potri.014G019400 [exp] 273 / 5e-89 AT4G24220 544 / 0.0 VEIN PATTERNING 1, Δ4,5-steroid-5[beta]-reductase, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Potri.002G120700 [exp] 271 / 3e-88 AT4G24220 569 / 0.0 VEIN PATTERNING 1, Δ4,5-steroid-5[beta]-reductase, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Potri.014G019300 [exp] 268 / 6e-87 AT4G24220 560 / 0.0 VEIN PATTERNING 1, Δ4,5-steroid-5[beta]-reductase, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Potri.003G134500 [exp] 268 / 8e-87 AT4G24220 550 / 0.0 VEIN PATTERNING 1, Δ4,5-steroid-5[beta]-reductase, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Potri.014G019600 [exp] 263 / 7e-85 AT4G24220 550 / 0.0 VEIN PATTERNING 1, Δ4,5-steroid-5[beta]-reductase, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039686 [exp] 497 / 7e-177 AT4G24220 302 / 5e-100 VEIN PATTERNING 1, Δ4,5-steroid-5[beta]-reductase, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Lus10039689 [exp] 471 / 2e-166 AT4G24220 305 / 4e-101 VEIN PATTERNING 1, Δ4,5-steroid-5[beta]-reductase, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Lus10039687 [exp] 414 / 5e-144 AT4G24220 271 / 8e-88 VEIN PATTERNING 1, Δ4,5-steroid-5[beta]-reductase, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Lus10032854 [exp] 277 / 2e-90 AT4G24220 577 / 0.0 VEIN PATTERNING 1, Δ4,5-steroid-5[beta]-reductase, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Lus10018705 [exp] 274 / 5e-89 AT4G24220 590 / 0.0 VEIN PATTERNING 1, Δ4,5-steroid-5[beta]-reductase, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Lus10018704 [exp] 255 / 1e-81 AT4G24220 530 / 0.0 VEIN PATTERNING 1, Δ4,5-steroid-5[beta]-reductase, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Lus10000076 [exp] 201 / 4e-62 AT4G24220 394 / 3e-138 VEIN PATTERNING 1, Δ4,5-steroid-5[beta]-reductase, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Lus10039688 [exp] 189 / 3e-58 AT4G24220 97 / 1e-23 VEIN PATTERNING 1, Δ4,5-steroid-5[beta]-reductase, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Lus10040675 [exp] 189 / 2e-56 AT5G58750 421 / 1e-146 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10027156 [exp] 129 / 3e-36 AT4G24220 79 / 4e-18 VEIN PATTERNING 1, Δ4,5-steroid-5[beta]-reductase, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2)
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.017G030700.1 pacid=42812887 polypeptide=Potri.017G030700.1.p locus=Potri.017G030700 ID=Potri.017G030700.1.v4.1 annot-version=v4.1 ATGGAGAAAGAAAAATCTCCAGATATATTAGTTGCCCTGATTGTGGGCGTCACTGGCATGGTAGGATTTAGCTTAGCAGAGGCTCTAAAGCAGCCAACAA CTCAAGGTAGCCCATGGAAAGTGTATGGCGTAGCAAGGCGTCCCTTGCCAAGTTGGTTTCCCTCTTCCTTGATCGACTGTTTCCTATCTCTCGATGCCTT AGACCATGAAGATACTAAAAACAAACTCTTTCCTGTAGCCCATGAAATCACCCATGTCTTCTGGATTTCCAGAAAACTTCGCGACAGTGAAGAAGTAAAC ATCTCCATGAACTCCACCATGCTAGCAAACGTGCTTAATGCACTCAAATCCGCTTTCCCTTCAAGGCTCAGACATGTCACTTTGCTAACCGGAACCAAAC ACTACATGGGTCCAATATTTGACCCTTCACTTAGAGGCCAGCTTGTCCATCAGGAGCCACCTTTCAAGGAGGACCTAGGCAGACTTCCCTACCCCAATTT CTACTATGCCTTAGAAGACTTGGTTGTCTCCTATTTGCCTTCAATTACACACTCAGTTCATCGCTCATCAATAATAATAGGTGCATCTTCAAGAAGTCTG AATAACACACTGCTTACTCTATCAGTTTATGCTACAATTTGTCGATACCAGGGGTTACCATTTCTATACCCTGGGAACAAATACATATGGGAGCACTTCT GCGACATGTCTGATGCAAGGGTACTGGCTGAGCAACAAATATGGGCAGCAGTGACTGAGGGAGCTAAGAATCAAGCCTTCAATTGCACAAATGGTGATGT TTTTACGTGGAAGAGTTTATGGGGAGTCCTGTGTGAGGTCTTTGATGTTGAGTTTGTGGCCTATGAAGAGAATGATGAGAAGTTTGATTGCTTAGCGATG ATGAAGGGTAAAGGAAAAGTGTGGGATGAGATTGTTGAGAAATACGGGCTGTTTGAGACTAAGATGGAAGATATTACTTGTTTTGAAGCACTTAATGTGG TTTTGCATTTTGGGTTTCAACATGTCTGTAGCATGAATAAAAGTAGAGAATCTGGGTTTCAAGGGTTTGCTGATACACTAAAGAGCATTCCGATGTGGGT GGGGAGACTGAGGGACATGAAAATCATACCGTGA
AA sequence Show only first row Show all	>Potri.017G030700.1 pacid=42812887 polypeptide=Potri.017G030700.1.p locus=Potri.017G030700 ID=Potri.017G030700.1.v4.1 annot-version=v4.1 MEKEKSPDILVALIVGVTGMVGFSLAEALKQPTTQGSPWKVYGVARRPLPSWFPSSLIDCFLSLDALDHEDTKNKLFPVAHEITHVFWISRKLRDSEEVN ISMNSTMLANVLNALKSAFPSRLRHVTLLTGTKHYMGPIFDPSLRGQLVHQEPPFKEDLGRLPYPNFYYALEDLVVSYLPSITHSVHRSSIIIGASSRSL NNTLLTLSVYATICRYQGLPFLYPGNKYIWEHFCDMSDARVLAEQQIWAAVTEGAKNQAFNCTNGDVFTWKSLWGVLCEVFDVEFVAYEENDEKFDCLAM MKGKGKVWDEIVEKYGLFETKMEDITCFEALNVVLHFGFQHVCSMNKSRESGFQGFADTLKSIPMWVGRLRDMKIIP

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G24220		5[beta]-StR, 5[...	VEIN PATTERNING 1, Δ4,5-s...		Potri.017G030700 [exp]	0	1
AT4G31270	Trihelix		sequence-specific DNA binding ...		Potri.006G279100 [exp]	4.24	0.7457
AT4G16745			Exostosin family protein (.1.2...		Potri.003G079000 [exp]	4.47	0.8000
AT4G16060			unknown protein		Potri.010G006000 [exp]	7.07	0.7630
AT1G03650			Acyl-CoA N-acyltransferases (N...		Potri.013G134000 [exp]	7.93	0.7324
					Potri.016G007450 [exp]	8.36	0.7431
AT5G06210			RNA binding (RRM/RBD/RNP motif...		Potri.006G208500 [exp]	14.38	0.7042
AT5G65720		ATNIFS1, NIFS1 ...	NITROGEN FIXATION S HOMOLOG 1,...		Potri.008G005101 [exp]	14.42	0.6717
AT5G42440			Protein kinase superfamily pro...		Potri.005G195500 [exp]	18.02	0.6639
AT5G37480			unknown protein		Potri.013G065200 [exp]	18.11	0.6526
ATCG00690		PSBTC, ATCG0069...	photosystem II reaction center...		Potri.019G028351 [exp]	24.08	0.7316

Compare expression of checked genes

Potri.017G030700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.