Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	BRD911
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G05910 1493 / 0 cell division cycle protein 48-related / CDC48-related (.1) AT3G15120 288 / 2e-79 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT5G03340 230 / 8e-63 ATPase, AAA-type, CDC48 protein (.1) AT3G09840 230 / 9e-63 ATCDC48, CDC48A, CDC48 cell division cycle 48 (.1) AT3G53230 228 / 5e-62 ATPase, AAA-type, CDC48 protein (.1) AT5G19990 181 / 2e-49 ATSUG1, RPT6A regulatory particle triple-A ATPase 6A (.1) AT5G20000 181 / 3e-49 RPT6A AAA-type ATPase family protein (.1) AT2G20140 178 / 4e-48 RPT2b regulatory particle AAA-ATPase 2b, AAA-type ATPase family protein (.1) AT4G29040 178 / 5e-48 RPT2A regulatory particle AAA-ATPase 2A (.1) AT1G53750 177 / 7e-48 RPT1A regulatory particle triple-A 1A (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G127900 [exp] 1784 / 0 AT1G05910 1351 / 0.0 cell division cycle protein 48-related / CDC48-related (.1) Potri.017G031400 [exp] 540 / 0 AT1G05910 328 / 6e-104 cell division cycle protein 48-related / CDC48-related (.1) Potri.011G141400 [exp] 291 / 2e-80 AT3G15120 1478 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.015G080600 [exp] 234 / 3e-64 AT5G03340 1455 / 0.0 ATPase, AAA-type, CDC48 protein (.1) Potri.017G108200 [exp] 230 / 5e-63 AT5G03340 1311 / 0.0 ATPase, AAA-type, CDC48 protein (.1) Potri.012G088200 [exp] 230 / 8e-63 AT5G03340 1459 / 0.0 ATPase, AAA-type, CDC48 protein (.1) Potri.006G125500 [exp] 230 / 1e-62 AT5G03340 1496 / 0.0 ATPase, AAA-type, CDC48 protein (.1) Potri.016G091600 [exp] 229 / 2e-62 AT3G53230 1484 / 0.0 ATPase, AAA-type, CDC48 protein (.1) Potri.008G144100 [exp] 179 / 1e-48 AT5G19990 741 / 0.0 regulatory particle triple-A ATPase 6A (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027038 [exp] 1634 / 0 AT1G05910 1546 / 0.0 cell division cycle protein 48-related / CDC48-related (.1) Lus10025576 [exp] 1628 / 0 AT1G05910 1557 / 0.0 cell division cycle protein 48-related / CDC48-related (.1) Lus10013677 [exp] 297 / 3e-82 AT3G15120 1474 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10017935 [exp] 266 / 2e-72 AT3G15120 1385 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10021442 [exp] 232 / 2e-63 AT5G03340 1520 / 0.0 ATPase, AAA-type, CDC48 protein (.1) Lus10021441 [exp] 231 / 4e-63 AT5G03340 1529 / 0.0 ATPase, AAA-type, CDC48 protein (.1) Lus10016123 [exp] 230 / 8e-63 AT5G03340 1526 / 0.0 ATPase, AAA-type, CDC48 protein (.1) Lus10016124 [exp] 229 / 2e-62 AT5G03340 1511 / 0.0 ATPase, AAA-type, CDC48 protein (.1) Lus10037385 [exp] 229 / 2e-62 AT5G03340 1501 / 0.0 ATPase, AAA-type, CDC48 protein (.1) Lus10001402 [exp] 192 / 1e-51 AT3G53230 803 / 0.0 ATPase, AAA-type, CDC48 protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00439 [poplar] [flax] Bromodomain Bromodomain CL0023 [poplar] [flax] P-loop_NTPase PF01695 [poplar] [flax] IstB_IS21 IstB-like ATP binding protein
Representative CDS sequence Show only first row Show all	>Potri.017G030900.2 pacid=42813418 polypeptide=Potri.017G030900.2.p locus=Potri.017G030900 ID=Potri.017G030900.2.v4.1 annot-version=v4.1 ATGTATACAAAACGTTCTGGTCAAGGAGATGGCCCAGTTGCAAGGCCTGTGCGGACTAGTGATAGGCTTAGGAGAAGACCAAAAGTGTTTAGCCGGACAT ACTTGTATTATACCCCAAGCATTATCCGGCCTAGGAAAGGAAAAACGAAGACGAGGACTGCAGCTTCTCGGATTGCCAAGATGTTGGGTAACCGGGCAGT GCGGGCTGCAAATGCTAATTCAGTTCCAACCAATCTTCGACGCTCAACAAGAAAGAGGAGGCTTTCTGCTCATCTTGAAGATTACACGGATAGTTCTGGA TCAGAGGATGAAGACTTGATGAGACCTGCATTTCGACCTTTGAGGAATCGGATTCATAATAGTGCAAGTCAAGATGAGTTATCATCTTCCAAGCGTAAAC AAATTGTGGAGACTAAATCAACACCTCGACGTGAAGGATTGCGGCCCCGTCGTTCAAGAACAATCAAAACAGAGCCATTGGCTTTAGACTCTGGGGATGA GCAAGATACTTCTGAGGAGAAGGCTGTCGAAGATGAGACTGAAAATGGGAACGATATTGATGATAATGATGCAGATGATGGTCAGAATGATGATGAGGGT GATGGAGAGGGTGAGGACGAAGGCGAGGAAGATGATGATGAAGGTGAAGAGGAGGAGGAGGAACAGGATGGAAGGAGGAGATATGATCTCCGAAATCGCG CAGAAGTCCGTAGGCTCTCTATGGAGGAAGGTAAGCAAAGACCACGATCTCCTCGAAGGGTATTGCATCAAGGAATGGGAACAAAGATCAATAGGGATGT AAGGAAGGGGGGATCAAGGGTTCACAAGCATCATCGTCTAACAAGAGCAGAAGATTCTGATGATTCCCTTCTTGTGGATGAGCTAGACCAAGGTCCTGCT ATTCCTTGGGCTCGAGGTGGGAGCAGATCTGGACCACCTTGGCTCTTAGGGGGACTAGAGATGCATGGGACGACAGCATGGGGACTGAATGTTGCTGCAT CTGGTTGGGGCCATCAAGGTGATGCCTTAGCAAGCTTGACTTCTGGTGTGCAAACTGCTGGCCCTAGCTCTAAGGGAGGGGCAGATATCCAACCTTTACA GGTTGATGAGAGTGTAAGTTTTGATGACATAGGTGGGCTTTCAGGATATATTGATGCTCTGAAGGAGATGGTTTTCTTTCCCTTGTTATATCCAGATTTC TTTGCCAGTTATCACATTACCCCGCCAAGAGGGGTTTTGTTATGTGGTCCTCCTGGTACTGGGAAAACTTTAATTGCCAGGGCACTAGCATGTGCTGCTT CAAAAGCTGGCCAGAAGGTTAGCTTTTACATGCGCAAGGGTGCTGATGTACTCAGCAAATGGGTTGGTGAGGCTGAAAGGCAATTGAAACTTCTTTTTGA GGAGGCGCAAAGGAACCAGCCTTCCATCATCTTCTTTGATGAAATAGATGGACTTGCTCCTGTTAGATCTAGCAAACAAGAGCAGATTCACAATTCTATT GTTTCTACTCTGCTTGCATTGATGGATGGTCTGGATTCTCGTGGACAAGTTGTTTTGATTGGAGCAACCAACAGAGTTGATGCCATTGATGGAGCCTTGC GTCGCCCTGGTCGGTTTGATCGAGAATTTAACTTTCCTTTGCCTGGTTGTGAGGCCCGTGCTGAAATATTAGACATTCACACCCGCAAGTGGAAGCATCC TCCTTCAAAGGAGCTAAAGTCAGAACTGGCAGCTAGTTGTGTCGGCTATTGTGGTGCTGATTTAAAGGCATTATGCACTGAAGCTGCCATCCGTGCTTTC CGGGAAAAATACCCTCAAGTTTACACAAGTGATGATAAGTTTGTGATAGATGTTGATTCTGTAAAGGTTGAAAAGTATCATTTTGTTGAAGCCATGTCCA CAATTACCCCTGCAGCTCATAGAGGTGCTGTTGTGCACTCTAGGCCATTGTCTTTAGTAGTCGCACCATGTCTGCAAAGTCATCTCCATAAAGCCATGAA TTGCCTATTCGATATATTTCCACCTCTTGCTGTGTCATCCGAGTTTATCAAACTTTCTATGCTTTCCTATGGATCTGCAATTCCTCTTGTGTTTAGGCCA CGGCTTCTGCTTTGTGGTTGTGAAGGTTCTGGTCTGGATCATCTTGGGCCTGCAGTGTTACATGAACTGGAGAAATTTCCTGTTCATTCTCTTGGACTTC CATCTCTGCTTTCAGATCCCAGTGCAAAGACACCAGAGGAAGCATTGGTGCACATATTTGGTGAAGCACGGAGAGCAACGCCATCTATCCTTTACATACC TCATTTTGATCTTTGGTGGGATAACGCGCATGAACAGCTCAGGGCTGTTCTTCTCACTTTATTAGAAGAATTGCCGTCAGACTTACCCATTCTATTACTT GGAAGCTCTTCATCTCCACTTGCTGAAATTGATGGTGCATCCTTGGTATTTCCCCATCGTTCAGCCTATCAAGTGGGGAAACCATCAACTGAAGACAGAT CTTTGTTCTTTGACCATTTAATTGAGGCTGCCTTATCAGTTGTGGTGGAGGACGTGACCAAGAAATCACAAGGATCTGCACCCCTTCCTGAACTTCCCAA GGCACAAAAAGTGGCAAGTGGCCCAAAGGCCTCAGAGTTAAAAGCCAAGATAGAAGCTGAGCAGCATGCTCTACGCCGAATGCGCATGTGCCTCAGAGAT ATTTGCAACCGGATGTTGTATGACAAACGATTTAGTGCCTTCCATTATCCTGTCACTGACGAGGATGCTCCAAACTATCGCTCTATAATCCAGAACCCTA TGGACATGGCTACCATGCTGCAGCGTGTTGACTCTGGTCAATATATCACATGCTCAGGATTCCTGCAAGACATTGATCTCATTGTGACCAATGCAAAGGT GTACAATGGAGATGATTACAATGGAGCTAGGATTGTCAGTAGAGGTTATGAGCTTCGGGATGCAGTGCATGGAATGTTGTCACAGATGGACCCTGCGCTT GTCACTTACTGTGACAAGATTGCTGCTCAAGGGGGTCCTGTACAAATACCAGATGACTTAGGGGGATCTATTTTCCCTTCAACCCCAGTTGTGCAGCTTG GAACAGTTACTAGAACAAGTGCCAGGCTACGCAATGTCCAGCCTGATGTTAATCTGGATCAAAGCTACGAGGCCTTGAAAAGGCAGAAGAAAAATGCTGA TGCTGCTCATGCTGCTTCAACAGCAGAAGATAAATCACGGCATCAGGATTCAGTGCAGGCAAAGCTGCCAGAGGAAGCCGGGGCAGATGATATGAATCCA GACAGACCTGAGTCCTCTTCAGCCGATGACAGTCGACATGAAACTTCAGGAGGAGAAGCTTCTGGTCATACCGAAGGGAGTGGATCCCAAGATGTTACAA TGTCAGAAGCCGAAGTATCAAGCCACGTGGATTACGTCAAGCGGCTTTTCGTGGAGCGCACTGAAAATTATGGCATTCCACTGCTTGAAAGGCTCTACAC TCGTATAATGAAGGGAATCTTCGAAACCAAGGACAAAGGAGTCGAAGATGATGGCCCCAGATACTCAATTTTGAGGTTTTTGGTGAAATTTGCAGAGAAT ACTGCAAACTTCTGA
AA sequence Show only first row Show all	>Potri.017G030900.2 pacid=42813418 polypeptide=Potri.017G030900.2.p locus=Potri.017G030900 ID=Potri.017G030900.2.v4.1 annot-version=v4.1 MYTKRSGQGDGPVARPVRTSDRLRRRPKVFSRTYLYYTPSIIRPRKGKTKTRTAASRIAKMLGNRAVRAANANSVPTNLRRSTRKRRLSAHLEDYTDSSG SEDEDLMRPAFRPLRNRIHNSASQDELSSSKRKQIVETKSTPRREGLRPRRSRTIKTEPLALDSGDEQDTSEEKAVEDETENGNDIDDNDADDGQNDDEG DGEGEDEGEEDDDEGEEEEEEQDGRRRYDLRNRAEVRRLSMEEGKQRPRSPRRVLHQGMGTKINRDVRKGGSRVHKHHRLTRAEDSDDSLLVDELDQGPA IPWARGGSRSGPPWLLGGLEMHGTTAWGLNVAASGWGHQGDALASLTSGVQTAGPSSKGGADIQPLQVDESVSFDDIGGLSGYIDALKEMVFFPLLYPDF FASYHITPPRGVLLCGPPGTGKTLIARALACAASKAGQKVSFYMRKGADVLSKWVGEAERQLKLLFEEAQRNQPSIIFFDEIDGLAPVRSSKQEQIHNSI VSTLLALMDGLDSRGQVVLIGATNRVDAIDGALRRPGRFDREFNFPLPGCEARAEILDIHTRKWKHPPSKELKSELAASCVGYCGADLKALCTEAAIRAF REKYPQVYTSDDKFVIDVDSVKVEKYHFVEAMSTITPAAHRGAVVHSRPLSLVVAPCLQSHLHKAMNCLFDIFPPLAVSSEFIKLSMLSYGSAIPLVFRP RLLLCGCEGSGLDHLGPAVLHELEKFPVHSLGLPSLLSDPSAKTPEEALVHIFGEARRATPSILYIPHFDLWWDNAHEQLRAVLLTLLEELPSDLPILLL GSSSSPLAEIDGASLVFPHRSAYQVGKPSTEDRSLFFDHLIEAALSVVVEDVTKKSQGSAPLPELPKAQKVASGPKASELKAKIEAEQHALRRMRMCLRD ICNRMLYDKRFSAFHYPVTDEDAPNYRSIIQNPMDMATMLQRVDSGQYITCSGFLQDIDLIVTNAKVYNGDDYNGARIVSRGYELRDAVHGMLSQMDPAL VTYCDKIAAQGGPVQIPDDLGGSIFPSTPVVQLGTVTRTSARLRNVQPDVNLDQSYEALKRQKKNADAAHAASTAEDKSRHQDSVQAKLPEEAGADDMNP DRPESSSADDSRHETSGGEASGHTEGSGSQDVTMSEAEVSSHVDYVKRLFVERTENYGIPLLERLYTRIMKGIFETKDKGVEDDGPRYSILRFLVKFAEN TANF

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G05910			cell division cycle protein 48...		Potri.017G030900 [exp]	0	1	BRD911
AT5G06350			ARM repeat superfamily protein...		Potri.011G095700 [exp]	4.35	0.8937
AT5G65560			Pentatricopeptide repeat (PPR)...		Potri.006G124900 [exp]	4.47	0.8735
AT1G22310		ATMBD8, MBD8	methyl-CPG-binding domain 8 (....		Potri.002G097700 [exp]	7.48	0.8403
AT4G30990			ARM repeat superfamily protein...		Potri.001G318800 [exp]	9.32	0.8721
AT4G20020			unknown protein		Potri.004G218800 [exp]	10.48	0.8578
AT2G45880	BZR	BAM7, BMY4	BETA-AMYLASE 4, beta-amylase 7...		Potri.014G083700 [exp]	10.58	0.8607
AT5G07980			dentin sialophosphoprotein-rel...		Potri.015G056400 [exp]	13.41	0.8475
AT3G01460		MBD9, ATMBD9	methyl-CPG-binding domain 9 (....		Potri.017G072460 [exp]	13.67	0.8384
AT3G62900			CW-type Zinc Finger (.1)		Potri.005G028700 [exp]	16.24	0.8468
AT4G00450		CCT, CRP	CRYPTIC PRECOCIOUS, CENTER CIT...		Potri.002G159900 [exp]	16.97	0.8528	Pt-CRP.3

Compare expression of checked genes

Potri.017G030900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.