Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G05910 329 / 3e-104 cell division cycle protein 48-related / CDC48-related (.1) AT1G76380 52 / 3e-07 DNA-binding bromodomain-containing protein (.1.2.3) AT1G20670 51 / 5e-07 DNA-binding bromodomain-containing protein (.1) AT3G01770 44 / 8e-05 ATBET10 bromodomain and extraterminal domain protein 10 (.1) AT5G14270 41 / 0.001 ATBET9 bromodomain and extraterminal domain protein 9 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G030900 [exp] 556 / 0 AT1G05910 1494 / 0.0 cell division cycle protein 48-related / CDC48-related (.1) Potri.007G127900 [exp] 517 / 1e-175 AT1G05910 1351 / 0.0 cell division cycle protein 48-related / CDC48-related (.1) Potri.012G094300 [exp] 48 / 5e-06 AT5G63320 513 / 9e-168 nuclear protein X1 (.1.2.3) Potri.001G335000 [exp] 46 / 2e-05 AT3G27260 460 / 5e-151 global transcription factor group E8 (.1.2) Potri.015G091800 [exp] 44 / 7e-05 AT5G63320 521 / 6e-171 nuclear protein X1 (.1.2.3) Potri.005G217400 [exp] 43 / 0.0002 AT3G54610 707 / 0.0 HISTONE ACETYLTRANSFERASE 1, general control non-repressible 5, BIG TOP, histone acetyltransferase of the GNAT family 1 (.1) Potri.002G045900 [exp] 43 / 0.0002 AT3G54610 718 / 0.0 HISTONE ACETYLTRANSFERASE 1, general control non-repressible 5, BIG TOP, histone acetyltransferase of the GNAT family 1 (.1) Potri.004G206200 [exp] 42 / 0.0003 AT1G20670 316 / 2e-97 DNA-binding bromodomain-containing protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025576 [exp] 353 / 5e-113 AT1G05910 1557 / 0.0 cell division cycle protein 48-related / CDC48-related (.1) Lus10027038 [exp] 352 / 2e-112 AT1G05910 1546 / 0.0 cell division cycle protein 48-related / CDC48-related (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00439 [poplar] [flax] Bromodomain Bromodomain
Representative CDS sequence Show only first row Show all	>Potri.017G031400.2 pacid=42813437 polypeptide=Potri.017G031400.2.p locus=Potri.017G031400 ID=Potri.017G031400.2.v4.1 annot-version=v4.1 ATGACAAACGATTTAGTGCCTTTCATTATCCTGTCACTGAAGAGGATGCTCCAACCTCGCTCTATAATCCAGAACCCTATGGACATGGCTACCATGCTGC AGCGTGTTGACTCTGGTCAATATATCACATGCTCAGGATTCCTGCAAGACATTGATCTCATTGTGACCAATGCAAAGGTGTACAATGGAGATGATTACAA TGGAGCTAGGATTGTCAGTAGAGGTTATGAGCTTCGGGATGCGGTGCATGGAATGTTGTCACAGATGGACCCTGCGCTTGTCACATACTGTGACAAGATT GCTGCTCAAGGGGGTCCTGTACAAATACCAGATGATTTAGGGGGATCTATTTTCCCTTCAACCCCAGTTGTGCAGCTTGGAACTGTTACTAGAACAAGTG CCAGGCTACGCAACGTCCAGCCTGATGTTAATCTGGATCAAAGCTACGAGGCCTTGAAAAGGCAGAAGAAAAATGCTGATGCTACTTGTGCTGCTTCAAC AGCAGAAGATAAATCACGGCATCAGGATTCAGTACAGGCAAAGCCGCCAGAGGAAGCCGGGGCAGATGATATGAATCCAGACAGACCTGAGTCCTCTTCA GCCGATGACAGTCGACATGAAACTTCAGGAGGAGAAGCTTCTGGTCACACCGAAGGGAGTGGATCCCAAGATGTTACAATGTCAGAAGCCGAAGTATCAA GCCACGTGGATTACATCAAGCGGCTTTTCGTGGAGCGCACAGAAAATTATGGCATGCCACTGCTTGAAAGGCTCTACACTCGTATAATGAAGGGAATCTT CGAAACCATGGACAAAGGAGTTGAAGATGGCCCCAGATACTCAATTTTGAGGTTTTTGGTGAAATTTGCAGAGAACACTGCAAACTTCTGA
AA sequence Show only first row Show all	>Potri.017G031400.2 pacid=42813437 polypeptide=Potri.017G031400.2.p locus=Potri.017G031400 ID=Potri.017G031400.2.v4.1 annot-version=v4.1 MTNDLVPFIILSLKRMLQPRSIIQNPMDMATMLQRVDSGQYITCSGFLQDIDLIVTNAKVYNGDDYNGARIVSRGYELRDAVHGMLSQMDPALVTYCDKI AAQGGPVQIPDDLGGSIFPSTPVVQLGTVTRTSARLRNVQPDVNLDQSYEALKRQKKNADATCAASTAEDKSRHQDSVQAKPPEEAGADDMNPDRPESSS ADDSRHETSGGEASGHTEGSGSQDVTMSEAEVSSHVDYIKRLFVERTENYGMPLLERLYTRIMKGIFETMDKGVEDGPRYSILRFLVKFAENTANF

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G05910			cell division cycle protein 48...		Potri.017G031400 [exp]	0	1
AT5G26830			Threonyl-tRNA synthetase (.1)		Potri.010G096500 [exp]	2.00	0.9357	Pt-THRRS.2
					Potri.019G038142 [exp]	2.44	0.9123
AT3G10980		SAG20, WI12, AT...	PLAC8 family protein (.1)		Potri.008G075300 [exp]	4.00	0.9236
AT5G53860		EMB64, EMB2737	EMBRYO DEFECTIVE 64, embryo de...		Potri.001G398900 [exp]	4.24	0.9263
AT5G66060			2-oxoglutarate (2OG) and Fe(II...		Potri.007G060800 [exp]	9.48	0.9006
AT5G22030		UBP8	ubiquitin-specific protease 8 ...		Potri.001G214800 [exp]	9.79	0.9022
AT4G31150			endonuclease V family protein ...		Potri.018G001000 [exp]	9.79	0.8951
AT1G61770			Chaperone DnaJ-domain superfam...		Potri.004G022600 [exp]	9.89	0.8610
AT5G56360		PSL4	PRIORITY IN SWEET LIFE 4, calm...		Potri.013G060266 [exp]	10.19	0.9015
AT1G77260			S-adenosyl-L-methionine-depend...		Potri.002G077100 [exp]	15.42	0.8877

Compare expression of checked genes

Potri.017G031400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.