Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G47680 1241 / 0 C3HZnF zinc finger (CCCH type) helicase family protein (.1) AT2G35920 201 / 5e-53 RNA helicase family protein (.1) AT2G01130 192 / 8e-50 DEA(D/H)-box RNA helicase family protein (.1) AT3G26560 175 / 2e-44 ATP-dependent RNA helicase, putative (.1) AT4G18465 172 / 3e-44 RNA helicase family protein (.1) AT2G35340 170 / 6e-43 MEE29 maternal effect embryo arrest 29, helicase domain-containing protein (.1) AT2G47250 168 / 8e-43 RNA helicase family protein (.1) AT1G32490 169 / 2e-42 EMB2733, ESP3 ENHANCED SILENCING PHENOTYPE 3, EMBRYO DEFECTIVE 2733, RNA helicase family protein (.1.2) AT1G48650 169 / 2e-42 DEA(D/H)-box RNA helicase family protein (.1), DEA(D/H)-box RNA helicase family protein (.2) AT1G58050 168 / 4e-42 RNA helicase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G068900 [exp] 207 / 9e-55 AT2G35920 1474 / 0.0 RNA helicase family protein (.1) Potri.015G042500 [exp] 188 / 2e-48 AT1G48650 1629 / 0.0 DEA(D/H)-box RNA helicase family protein (.1), DEA(D/H)-box RNA helicase family protein (.2) Potri.010G246000 [exp] 185 / 1e-47 AT5G04895 1862 / 0.0 DEA(D/H)-box RNA helicase family protein (.1) Potri.010G117800 [exp] 182 / 2e-46 AT2G01130 1639 / 0.0 DEA(D/H)-box RNA helicase family protein (.1) Potri.012G034200 [exp] 178 / 3e-45 AT3G26560 1744 / 0.0 ATP-dependent RNA helicase, putative (.1) Potri.015G024400 [exp] 175 / 2e-44 AT3G26560 1768 / 0.0 ATP-dependent RNA helicase, putative (.1) Potri.004G052700 [exp] 169 / 2e-43 AT4G18465 1092 / 0.0 RNA helicase family protein (.1) Potri.002G192500 [exp] 164 / 8e-42 AT3G62310 1276 / 0.0 RNA helicase family protein (.1) Potri.014G117900 [exp] 164 / 8e-42 AT3G62310 1252 / 0.0 RNA helicase family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030371 [exp] 1164 / 0 AT2G47680 1071 / 0.0 zinc finger (CCCH type) helicase family protein (.1) Lus10007938 [exp] 187 / 5e-48 AT2G01130 1570 / 0.0 DEA(D/H)-box RNA helicase family protein (.1) Lus10009012 [exp] 182 / 2e-46 AT1G48650 1644 / 0.0 DEA(D/H)-box RNA helicase family protein (.1), DEA(D/H)-box RNA helicase family protein (.2) Lus10013479 [exp] 181 / 4e-46 AT2G01130 1570 / 0.0 DEA(D/H)-box RNA helicase family protein (.1) Lus10009643 [exp] 176 / 1e-44 AT1G48650 1469 / 0.0 DEA(D/H)-box RNA helicase family protein (.1), DEA(D/H)-box RNA helicase family protein (.2) Lus10036783 [exp] 176 / 2e-44 AT3G26560 1790 / 0.0 ATP-dependent RNA helicase, putative (.1) Lus10037145 [exp] 175 / 2e-44 AT3G26560 1529 / 0.0 ATP-dependent RNA helicase, putative (.1) Lus10009660 [exp] 173 / 4e-44 AT2G35920 969 / 0.0 RNA helicase family protein (.1) Lus10015812 [exp] 167 / 2e-42 AT1G27900 1097 / 0.0 RNA helicase family protein (.1) Lus10036991 [exp] 166 / 3e-42 AT1G27900 1089 / 0.0 RNA helicase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [poplar] [flax] P-loop_NTPase PF00270 [poplar] [flax] DEAD DEAD/DEAH box helicase CL0023 [poplar] [flax] P-loop_NTPase PF00271 [poplar] [flax] Helicase_C Helicase conserved C-terminal domain CL0537 [poplar] [flax] CCCH_zf PF00642 [poplar] [flax] zf-CCCH Zinc finger C-x8-C-x5-C-x3-H type (and similar)
Representative CDS sequence Show only first row Show all	>Potri.017G031800.2 pacid=42814274 polypeptide=Potri.017G031800.2.p locus=Potri.017G031800 ID=Potri.017G031800.2.v4.1 annot-version=v4.1 ATGGGGGAATCGCCATCATCTCCTACGTCGTGCAGCTCTTCACGTTCTGCACCATTTCCGCAATCGAACTTCGCGTCTCTTCCAGTAATGGCTCGCAAGG ACAAAATTGTCGAGAAAATCTTGGAAAATCGCGTCACTCTCATCGTCGGCGAGACTGGCTGCGGAAAGAGCTCTCAAGTTCCACAGTTTCTTCTGGAAGA AAACATGAAACCCATTTTATGCACACAACCAAGGAGATTTGCTGTTGTTGCTGTTGCTAAAATGGTTGCTAAAGCTCGTAACTGTGAACTTGGAGCACAG GTTGGATATCACATAGGTCATTCGAAGCTTATATCGGCAAGCAGTTCAGAAATTGTCTTCAAAACAGCTGGTGTTTTGTTGGATGAAATGCGAGATAAAG GGCTGAACGCTCTCAACTACAAGGCTATTATTCTTGATGAAGTGCATGAAAGATCTGTTGAATCTGATCTTGTTCTTGTTTGTGTCAAGCAGTTTCTGTT GAAAAACAATGACCTGAGGTTGGTATTGATGTCGGCAACTGCTGATATTGCAAGATACCGAGATTACTTCAAAGACCTCGGTAGGGGTGAAAGAGTTGAG GTGCTTACAATCACTAACACCAACCAACAGGCCCTTTTCCAGCGAAGAGTTTCATATCTTGAACAGGTAACTGAACTTCTTGGAACGAGTTCAGACTTAT TGGCCCAAACCTACTGTTCAGGACCAAACCCTTCTATGGCTGCTGCTGATATCAAACCAGAAGTGCATAGACTTATTTTTGATTTGATTTTGCACATTCA TGAAAATGAACCAGACATTGAAAAGGGCATTTTGGTTTTCCTTCCAACGTACCATGACCTGGAGCAGCAGTGGCATCGTCTGAATCCACTTAGTTCATCT TTTAAAGTTCACATTTTACATGGAAGCATTGACACTCAACAAGCTCTTTTGGCTATGAAAATCTTGAAATCTCATCGTAAGGTAATATTGGCCACAAATA TTGCAGAATCATCTGTAACCATACCCAAAGTAGCCTATGTCATTGATTCATGCCGATCTTTACAAGTTTTCTGGGACGCTACTAGGAAAAAGGATTCTAC AGAGCTTGTTTGGGTTTCTAAGTCTCAGGCTAATCAGCGGAAAGGGAGAACTGGTCGAACTTGTGATGGCCAGATATATCGGTTGGTCACAAAATCATTT TTCAACAAGCTGGAGGATCATGAACGTCCAGCCATATTGAGGTTGTCATTGCGGCAACAAGTTCTTCTGATGTGTTGTGCTGAATCCAGAGCCATTAATG ATCCCAAGGTCTTGTTGCAGAAGGCTTTGGATCCCCCAGATCCTGAGTTTATTGAAGATGCATTAAATTTGCTTGTTTGCATGAAGGCATTGGATAGACC ATCTCCAAGGGGGCGGTACGAGCCCACCTTTTATGGACGGTTGCTTGCCAGTTTCCCATTGTCCTTTGATGCTTCTGTGCTTGTACTCAAGTTTGCAGAC TTTGGATTGCTCCAGCAAGGCATTCTACTGGGCATATTGATGGATGCCCAGCCTCAACCGATTCTTCGTCCTTTTGGAGAGGAACATTTGTATACAGAGT ACGCTTACCGATACTATGGTGGAGACTGCGACTATTCTGTCCAAATTGGTCGAAAGGAGATGATACTAATTGGAAACTTGGGTGCATATCAGTTCTGGCA ACATATATTTAAGGATAAGCACCGCCTTGAACGCTTGAAACACCTTTTAAAGATTGATGAAATGAAAGATACCACTGTATTGCTGCCAAAGATCGAAGAA GAATGGTGCACATCCCATAATCTTGTCCAATCATCACTACATAATGTCTCTGAAATATATGAAGATATACTAAATTCACTGCATCGGTTTCGGCCAAGAT TTCTGGGTACCTGTAATGATTTACCGACTTGGCATGCCCCTTATGAATTTAAGCACACTTGTCTTCTAAAATGTCAGCCAAAAGGAGATAATGATACTGT TGTTGCGGATGATGAGCATGATGAGCCATCTCATGAAACAAGGAAATGTTTTGCGGTACCATTTGTTGCTCCAAGTCACTTTCAGACCATAAAAGTGGCT GAAAATTTGTCAAATATTATCAAAGAGATAAGAGTTCGGCATACAGACAGCACGTCTGACGATCAGCATGGGTATATTGTTAATGTGTCTCATGGCAATG AAGAAGCTTCTCTGTGTGTATATTTTATGAAGGGATCCTGCAACAGAGGCAGTCAATGTTTGTTTTCTCATTCAGCTCAAGCGAAAAGAGATCCGTGCAA ATTCTTTTTCACTTTACAAGGATGTCGAAATGGAGAGACTTGTTCCTTTTCTCATGTTGTGGGTCCATCATTGTCATCATTTAGCTCAACTCCATGCATG CCAGAAGATGGTGCTGTCAATGCCGCGTCCCTGCTACGTTTTCTTCCAACGTCTTCTGATGGATGTGTTCTGTTATTGGATGACACTGATTTGCATTTCT CCTCAAATCTTGCTCGTCACTACGATCCTTGCAAAATAATCTCTACAACATGCATGTCAGACACTTTCATGTGCGACCCATCATTGATGGGTATCAGAAT TCTGTGGGGTCTCCACCACCCATACCAAACCATTATTTCCACTCCCAGAGATAGTCCCATTCCATGGAGTGAAGTTAAGTGCATATTGTGGTTGCCTAAT TTAGATAGTTACAGTGAAAATTTGGAGAGGCAGAAAACTTTTGTGCAGAATTTCTTTGAGTACTTAGCCATCCGAATATTAGCTGATGCCTTGTATGAAG TGCAAGTTATCCTCGTCATGAACAATATCAAATTTTCACTGCTACAGGTAGAGAAGTTGGGGAGAGACAGCTTCTTTTTCCTTGGAGAGTCTTTTCCATT CGACGAGGAAAGCTTTGGTCAGATGCCAAATACAGTCACTACTAGAAAGCCAATGATGGTATCAAAGCCCATCTCATACGTATTTATCCTGCAACCGCCT ACTGACGTTCAGTTTGGCAACTATGCTGCCATACTTCAAAAACATCTGCACGATGTCAATGGGAACCATGTGGAGGGTTTTCAGGGTTTGCATTCTTAA
AA sequence Show only first row Show all	>Potri.017G031800.2 pacid=42814274 polypeptide=Potri.017G031800.2.p locus=Potri.017G031800 ID=Potri.017G031800.2.v4.1 annot-version=v4.1 MGESPSSPTSCSSSRSAPFPQSNFASLPVMARKDKIVEKILENRVTLIVGETGCGKSSQVPQFLLEENMKPILCTQPRRFAVVAVAKMVAKARNCELGAQ VGYHIGHSKLISASSSEIVFKTAGVLLDEMRDKGLNALNYKAIILDEVHERSVESDLVLVCVKQFLLKNNDLRLVLMSATADIARYRDYFKDLGRGERVE VLTITNTNQQALFQRRVSYLEQVTELLGTSSDLLAQTYCSGPNPSMAAADIKPEVHRLIFDLILHIHENEPDIEKGILVFLPTYHDLEQQWHRLNPLSSS FKVHILHGSIDTQQALLAMKILKSHRKVILATNIAESSVTIPKVAYVIDSCRSLQVFWDATRKKDSTELVWVSKSQANQRKGRTGRTCDGQIYRLVTKSF FNKLEDHERPAILRLSLRQQVLLMCCAESRAINDPKVLLQKALDPPDPEFIEDALNLLVCMKALDRPSPRGRYEPTFYGRLLASFPLSFDASVLVLKFAD FGLLQQGILLGILMDAQPQPILRPFGEEHLYTEYAYRYYGGDCDYSVQIGRKEMILIGNLGAYQFWQHIFKDKHRLERLKHLLKIDEMKDTTVLLPKIEE EWCTSHNLVQSSLHNVSEIYEDILNSLHRFRPRFLGTCNDLPTWHAPYEFKHTCLLKCQPKGDNDTVVADDEHDEPSHETRKCFAVPFVAPSHFQTIKVA ENLSNIIKEIRVRHTDSTSDDQHGYIVNVSHGNEEASLCVYFMKGSCNRGSQCLFSHSAQAKRDPCKFFFTLQGCRNGETCSFSHVVGPSLSSFSSTPCM PEDGAVNAASLLRFLPTSSDGCVLLLDDTDLHFSSNLARHYDPCKIISTTCMSDTFMCDPSLMGIRILWGLHHPYQTIISTPRDSPIPWSEVKCILWLPN LDSYSENLERQKTFVQNFFEYLAIRILADALYEVQVILVMNNIKFSLLQVEKLGRDSFFFLGESFPFDEESFGQMPNTVTTRKPMMVSKPISYVFILQPP TDVQFGNYAAILQKHLHDVNGNHVEGFQGLHS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G47680	C3HZnF		zinc finger (CCCH type) helica...		Potri.017G031800 [exp]	0	1
AT4G02570		AXR6, ATCUL1	AUXIN RESISTANT 6, cullin 1 (....		Potri.005G027900 [exp]	3.00	0.7885
AT3G11660		NHL1	NDR1/HIN1-like 1 (.1)		Potri.006G204200 [exp]	9.32	0.6875
					Potri.002G121800 [exp]	11.18	0.6926
AT5G04500			glycosyltransferase family pro...		Potri.008G028900 [exp]	13.34	0.7720
AT1G72010	TCP	TCP22	TCP family transcription facto...		Potri.019G081800 [exp]	20.49	0.7199
					Potri.001G434600 [exp]	21.07	0.7238
AT4G02570		AXR6, ATCUL1	AUXIN RESISTANT 6, cullin 1 (....		Potri.005G027800 [exp]	21.16	0.7196
AT5G63090	AS2	LOBB, LOB	Lateral organ boundaries (LOB)...		Potri.012G083500 [exp]	24.37	0.6958
AT2G38430			unknown protein		Potri.019G030300 [exp]	26.45	0.6430
AT1G17180		ATGSTU25	glutathione S-transferase TAU ...		Potri.011G113100 [exp]	30.39	0.7114

Compare expression of checked genes

Potri.017G031800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.