Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G31510 833 / 0 ATARI7, ARI7 ARABIDOPSIS ARIADNE 7, ARIADNE 7, IBR domain-containing protein (.1) AT1G65430 795 / 0 ATARI8, ARI8 ARABIDOPSIS ARIADNE 8, ARIADNE 8, IBR domain-containing protein (.1) AT1G05890 777 / 0 ATARI5, ARI5 ARABIDOPSIS ARIADNE 5, ARIADNE 5, RING/U-box superfamily protein (.1.2) AT2G31770 597 / 0 ATARI9, ARI9 ARABIDOPSIS ARIADNE 9, ARIADNE 9, RING/U-box superfamily protein (.1) AT2G31760 583 / 0 ATARI10, ARI10 ARABIDOPSIS ARIADNE 10, ARIADNE 10, RING/U-box superfamily protein (.1) AT2G31780 510 / 5e-178 ATARI11 ARABIDOPSIS ARIADNE 11, ARIADNE 11, RING/U-box superfamily protein (.1) AT1G05880 342 / 1e-111 ATARI12, ARI12 ARABIDOPSIS ARIADNE 12, ARIADNE 12, RING/U-box superfamily protein (.1.2) AT4G34370 232 / 1e-68 ATARI1 ARABIDOPSIS ARIADNE 1, ARIADNE 1, RING/U-box superfamily protein (.1.2) AT3G27710 222 / 2e-65 ARARI3, ATARI13 ARABIDOPSIS ARIADNE 3, RING/U-box superfamily protein (.1) AT2G16090 214 / 6e-62 ATARI2, ARI2, ATARI12 ARABIDOPSIS ARIADNE 2, ARIADNE 2, RING/U-box superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G126900 [exp] 990 / 0 AT2G31510 836 / 0.0 ARABIDOPSIS ARIADNE 7, ARIADNE 7, IBR domain-containing protein (.1) Potri.010G180600 [exp] 857 / 0 AT1G65430 860 / 0.0 ARABIDOPSIS ARIADNE 8, ARIADNE 8, IBR domain-containing protein (.1) Potri.008G077100 [exp] 840 / 0 AT1G65430 836 / 0.0 ARABIDOPSIS ARIADNE 8, ARIADNE 8, IBR domain-containing protein (.1) Potri.002G131200 [exp] 588 / 0 AT1G65430 571 / 0.0 ARABIDOPSIS ARIADNE 8, ARIADNE 8, IBR domain-containing protein (.1) Potri.002G131300 [exp] 560 / 0 AT1G65430 536 / 0.0 ARABIDOPSIS ARIADNE 8, ARIADNE 8, IBR domain-containing protein (.1) Potri.T124304 [exp] 216 / 2e-62 AT4G34370 835 / 0.0 ARABIDOPSIS ARIADNE 1, ARIADNE 1, RING/U-box superfamily protein (.1.2) Potri.009G111200 [exp] 216 / 2e-62 AT4G34370 835 / 0.0 ARABIDOPSIS ARIADNE 1, ARIADNE 1, RING/U-box superfamily protein (.1.2) Potri.001G037200 [exp] 77 / 3e-15 AT3G14250 240 / 3e-78 RING/U-box superfamily protein (.1) Potri.001G214201 [exp] 71 / 8e-15 AT1G65430 66 / 9e-14 ARABIDOPSIS ARIADNE 8, ARIADNE 8, IBR domain-containing protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025566 [exp] 862 / 0 AT2G31510 826 / 0.0 ARABIDOPSIS ARIADNE 7, ARIADNE 7, IBR domain-containing protein (.1) Lus10027027 [exp] 856 / 0 AT2G31510 807 / 0.0 ARABIDOPSIS ARIADNE 7, ARIADNE 7, IBR domain-containing protein (.1) Lus10026856 [exp] 838 / 0 AT1G65430 887 / 0.0 ARABIDOPSIS ARIADNE 8, ARIADNE 8, IBR domain-containing protein (.1) Lus10020229 [exp] 768 / 0 AT1G65430 833 / 0.0 ARABIDOPSIS ARIADNE 8, ARIADNE 8, IBR domain-containing protein (.1) Lus10013371 [exp] 452 / 2e-154 AT2G31510 441 / 2e-150 ARABIDOPSIS ARIADNE 7, ARIADNE 7, IBR domain-containing protein (.1) Lus10040508 [exp] 226 / 3e-66 AT4G34370 746 / 0.0 ARABIDOPSIS ARIADNE 1, ARIADNE 1, RING/U-box superfamily protein (.1.2) Lus10011309 [exp] 214 / 2e-61 AT4G34370 731 / 0.0 ARABIDOPSIS ARIADNE 1, ARIADNE 1, RING/U-box superfamily protein (.1.2) Lus10042348 [exp] 212 / 5e-61 AT4G34370 827 / 0.0 ARABIDOPSIS ARIADNE 1, ARIADNE 1, RING/U-box superfamily protein (.1.2) Lus10000131 [exp] 190 / 6e-57 AT2G31760 182 / 7e-55 ARABIDOPSIS ARIADNE 10, ARIADNE 10, RING/U-box superfamily protein (.1) Lus10026319 [exp] 197 / 1e-55 AT2G16090 788 / 0.0 ARABIDOPSIS ARIADNE 2, ARIADNE 2, RING/U-box superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0229 [poplar] [flax] RING PF01485 [poplar] [flax] IBR IBR domain, a half RING-finger domain
Representative CDS sequence Show only first row Show all	>Potri.017G032000.1 pacid=42813755 polypeptide=Potri.017G032000.1.p locus=Potri.017G032000 ID=Potri.017G032000.1.v4.1 annot-version=v4.1 ATGGACTCAGAGGATGACATGATGGACGCGAACGACGTCGAATCAGTTGACGATGATTTCTATAGTGGTGACATGGAGGATGATTATTACAGTGATGGTG TTTATTATGATAATGATGATGATGATGTTAATGATGATGATGACGGTCCTGATTATGATTTTATGGCTGAAGCTGTTGATGATCCCGATGACTTGTCGTT CCGCTCTCAGCAAAGTTATACAGTCTTGAAGGAAGAAGATATACGTCAACGCCAAGAAGATGATATAACAAGAGTATCTACTGTCCTTTCCATATCAAGA GTCGCAGCAAGCATCTTACTCCGTCATTATAATTGGAGTATTAGTAAAGTGCATGATGCATGGTTTTCTGATGAAGATGCTGTCCGAATATCTGTTGGCT TGCTAGACAAGCAAGTAGTTCAGTTTTCCAATGCTCGAGAACTTACTTGTGGGATCTGCTTTGAATCCTTTCCTCGCAATAAAATTGTCTCAGCTTCTTG TGGCCATCCTTTCTGTAATACATGCTGGTCAGGTTACATTAGCACAACAATTAATGATGGTCCTGGATGTTTGATGCTAAGATGCCCTGATCCATGTTGT CGAGCTGCTGTTGGTCAAGACATGATCAATTTGTTAGCCCCTGATGAAGATAAGGAGAAATACTCTCGGTACCTCCTAAGGTCCTATGTTGAAGGCAACA GAAAGACCAAGTGGTGTCCTGCTCCAGGATGCGAGTATGCTGTTGATTTTGCTGCTGGCAGTGGAAGCTTTGATGTCTCCTGCCTCTGTTCACATAGCTT TTGCTGGAACTGTGTGGAGGAAGCTCATCGTCCAGTAGACTGTGGCACTGTTGAAAAGTGGATTTTGAAGAACAGCGCTGAGTCTGAAAACATGAATTGG ATACTTGCTAATTCCAAACCTTGTCCAAAATGCAAGCGACCAATTGAAAAAAACCAAGGGTGCATGCACATGACATGCACCCCTCCTTGTAAATTTGAAT TTTGTTGGCTGTGCCTTGGTGCATGGTCAGATCATGGTGAGCGGACAGGTGGTTTCTATGCTTGTAACAGATACGAGGCAGCCAAGCAAGAGGGAGCATA TGATGAGTCAGAGAGGAGGCGAGAAATGGCAAAAAATTCTTTGGAGAGATACACCCATTATTATGAACGATGGGCAAGCAATCAGTTGTCGAGGCAAAAA GCTCTTGCAGATTTGCATCAAATGCAGACTGTGCATCTTGAGAAGCTGAGTGACGTACATTGCACACCTGAGTCTCAGCTGAAGTTCATAACGGAAGCCT GGCTTCAGATAGTTGAATGCAGGCGAGTTCTGAAATGGACATATGCATATGGGTTTTATCTTCCTGAGCATGAGCATGCCAAGAGACAGTTTTTTGAGTA CTTGCAAGGTGAGGCTGAGTCCGGTTTGGAAAGGCTTCATCAATGTGCAGAGAAGGAACTACAACAGTTTCTTGCTGCTGATGGCCCATCAAAAGAGTTC GATGAGTTCCGGACGAAATTAGCTGGGTTGACCAGCGTGACAAAAAATTATTTTGAGAACCTGGTTAGAGCATTAGAGAATGGTCTAGCAGATGTGACTC AAGCTGCTTGTAGCAAGACCTCAAGCTCAAAAAATGCCAGTGTCAGCAAAGGGAAAGGTGGCAAGGGAAAGGGTGGTAAAATGGGTGGTTCAAGCAAAAA TGGAGATGATTAA
AA sequence Show only first row Show all	>Potri.017G032000.1 pacid=42813755 polypeptide=Potri.017G032000.1.p locus=Potri.017G032000 ID=Potri.017G032000.1.v4.1 annot-version=v4.1 MDSEDDMMDANDVESVDDDFYSGDMEDDYYSDGVYYDNDDDDVNDDDDGPDYDFMAEAVDDPDDLSFRSQQSYTVLKEEDIRQRQEDDITRVSTVLSISR VAASILLRHYNWSISKVHDAWFSDEDAVRISVGLLDKQVVQFSNARELTCGICFESFPRNKIVSASCGHPFCNTCWSGYISTTINDGPGCLMLRCPDPCC RAAVGQDMINLLAPDEDKEKYSRYLLRSYVEGNRKTKWCPAPGCEYAVDFAAGSGSFDVSCLCSHSFCWNCVEEAHRPVDCGTVEKWILKNSAESENMNW ILANSKPCPKCKRPIEKNQGCMHMTCTPPCKFEFCWLCLGAWSDHGERTGGFYACNRYEAAKQEGAYDESERRREMAKNSLERYTHYYERWASNQLSRQK ALADLHQMQTVHLEKLSDVHCTPESQLKFITEAWLQIVECRRVLKWTYAYGFYLPEHEHAKRQFFEYLQGEAESGLERLHQCAEKELQQFLAADGPSKEF DEFRTKLAGLTSVTKNYFENLVRALENGLADVTQAACSKTSSSKNASVSKGKGGKGKGGKMGGSSKNGDD

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G31510		ATARI7, ARI7	ARABIDOPSIS ARIADNE 7, ARIADNE...		Potri.017G032000 [exp]	0	1
AT4G34100			RING/U-box superfamily protein...		Potri.009G099400 [exp]	1.00	0.8337
AT5G25270			Ubiquitin-like superfamily pro...		Potri.006G059700 [exp]	1.41	0.7939
AT4G38690			PLC-like phosphodiesterases su...		Potri.009G131600 [exp]	2.44	0.7632
AT5G07910			Leucine-rich repeat (LRR) fami...		Potri.015G048800 [exp]	2.82	0.7695
AT3G03310		ATLCAT3	ARABIDOPSIS LECITHIN:CHOLESTER...		Potri.008G076300 [exp]	3.00	0.7848
AT2G17020			F-box/RNI-like superfamily pro...		Potri.009G139500 [exp]	5.74	0.7169
AT1G10240	FAR1_related	FRS11	FAR1-related sequence 11 (.1)		Potri.008G108800 [exp]	8.48	0.7488
AT3G48195			Phox (PX) domain-containing pr...		Potri.012G082500 [exp]	9.74	0.7633
AT1G54710		ATATG18H	homolog of yeast autophagy 18 ...		Potri.005G040300 [exp]	10.90	0.7505
AT1G33980		ATUPF3, UPF3	Smg-4/UPF3 family protein (.1....		Potri.019G077500 [exp]	16.91	0.6912

Compare expression of checked genes

Potri.017G032000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.