Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G43330 743 / 0 ATINT1 inositol transporter 1 (.1) AT1G30220 385 / 4e-128 ATINT2 ARABIDOPSIS THALIANA INOSITOL TRANSPORTER 2, inositol transporter 2 (.1) AT4G16480 359 / 4e-118 ATINT4 inositol transporter 4 (.1) AT2G35740 343 / 5e-112 ATINT3 nositol transporter 3 (.1) AT3G18830 237 / 2e-71 ATPMT5, AtPLT5 ARABIDOPSIS THALIANA POLYOL/MONOSACCHARIDE TRANSPORTER 5, POLYOL TRANSPORTER 5, polyol/monosaccharide transporter 5 (.1) AT2G20780 224 / 1e-66 AtPLT4 Major facilitator superfamily protein (.1) AT5G59250 224 / 1e-66 Major facilitator superfamily protein (.1) AT4G36670 220 / 1e-65 AtPMT6, AtPLT6 polyol/monosaccharide transporter 6, polyol transporter 6, Major facilitator superfamily protein (.1) AT2G16130 219 / 3e-65 ATPMT2, AtPLT2 ARABIDOPSIS THALIANA POLYOL/MONOSACCHARIDE TRANSPORTER 2, polyol/monosaccharide transporter 2 (.1) AT5G16150 219 / 7e-65 PGLCT, GLT1 GLUCOSE TRANSPORTER 1, plastidic GLC translocator (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G126800 [exp] 857 / 0 AT2G43330 710 / 0.0 inositol transporter 1 (.1) Potri.016G010600 [exp] 368 / 2e-121 AT4G16480 825 / 0.0 inositol transporter 4 (.1) Potri.017G032400 [exp] 353 / 2e-121 AT2G43330 272 / 8e-90 inositol transporter 1 (.1) Potri.006G015200 [exp] 362 / 4e-119 AT4G16480 811 / 0.0 inositol transporter 4 (.1) Potri.006G015300 [exp] 355 / 2e-116 AT4G16480 788 / 0.0 inositol transporter 4 (.1) Potri.004G133340 [exp] 237 / 7e-75 AT1G30220 354 / 6e-120 ARABIDOPSIS THALIANA INOSITOL TRANSPORTER 2, inositol transporter 2 (.1) Potri.013G135200 [exp] 244 / 2e-74 AT2G20780 747 / 0.0 Major facilitator superfamily protein (.1) Potri.004G039100 [exp] 239 / 2e-72 AT2G20780 647 / 0.0 Major facilitator superfamily protein (.1) Potri.009G113600 [exp] 235 / 9e-71 AT3G18830 717 / 0.0 ARABIDOPSIS THALIANA POLYOL/MONOSACCHARIDE TRANSPORTER 5, POLYOL TRANSPORTER 5, polyol/monosaccharide transporter 5 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025565 [exp] 765 / 0 AT2G43330 768 / 0.0 inositol transporter 1 (.1) Lus10027026 [exp] 744 / 0 AT2G43330 769 / 0.0 inositol transporter 1 (.1) Lus10043120 [exp] 573 / 0 AT2G43330 593 / 0.0 inositol transporter 1 (.1) Lus10028118 [exp] 384 / 1e-127 AT1G30220 893 / 0.0 ARABIDOPSIS THALIANA INOSITOL TRANSPORTER 2, inositol transporter 2 (.1) Lus10042820 [exp] 383 / 3e-127 AT1G30220 890 / 0.0 ARABIDOPSIS THALIANA INOSITOL TRANSPORTER 2, inositol transporter 2 (.1) Lus10017561 [exp] 358 / 9e-118 AT4G16480 820 / 0.0 inositol transporter 4 (.1) Lus10010500 [exp] 357 / 3e-117 AT4G16480 823 / 0.0 inositol transporter 4 (.1) Lus10038808 [exp] 353 / 1e-115 AT4G16480 760 / 0.0 inositol transporter 4 (.1) Lus10039050 [exp] 351 / 6e-115 AT4G16480 769 / 0.0 inositol transporter 4 (.1) Lus10010501 [exp] 350 / 2e-114 AT4G16480 755 / 0.0 inositol transporter 4 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0015 [poplar] [flax] MFS PF07690 [poplar] [flax] MFS_1 Major Facilitator Superfamily
Representative CDS sequence Show only first row Show all	>Potri.017G032200.1 pacid=42814423 polypeptide=Potri.017G032200.1.p locus=Potri.017G032200 ID=Potri.017G032200.1.v4.1 annot-version=v4.1 ATGACGATTCAGCCCTCACCGGGAAGTTCCGGTTTCTTGCCGGGAAGTTCAGGGTATTTAGACATGTTTCCGGAGAGAAGAATGTCGTATTTTAGTAATT CTTATGTAATTGGATTGACGGTTGCTGCTGGCATTGGCGGTCTCCTTTTTGGCTACGATACTGGTGTAATTTCAGGGGCTCTTTTGTACATAAAAGATGA ATTTGAGGTGGTTAATCAGAGTAGCTTTTTACAGGAAACTATTGTCAGTATGGCATTGGTTGGCGCAATAATAGGAGCTGCAGGAGGCGGTTGGATCAAT GATGCGTATGGACGCAAGAAAGCTACCCTTCTTGCTGACGTTGTCTTTGCAGCTGGATCCATTGTTATGGCGGCTGCCCCGAATCCCTATGTTCTTATAT TGGGACGGCTTTTTGTTGGCCTGGGTGTCGGTATAGCATCTGTTACTGCTCCTGTGTATATTGCAGAAGCATCTCCTTCAGAAGTAAGAGGAGGATTAGT AAGCACAAATGTTCTTATGATTACCGGTGGACAGTTTCTTTCCTATCTTGTAAATCTTGCTTTTACTGAGGTCCCTGGAACTTGGAGGTGGATGGTTGGA GTTGCTGCTGTGCCTGCTGTGATTCAGTTCTGCATTATGTTATGCTTGCCAGAGTCTCCTCGGTGGCTTTTCATGAAGGACAACAAAGCTAAAGCCATTG CAATACTTTCTAAAATATATGACGTTGCTCGGTTACAGGATGAAATTGATCACCTTTCCATTACTGAAGAGGAAGAGTGCCAGAAAAGGAATGATGTCAA AATCTCAGATGTGTTCAAATCAAAAGAAATCAGACTTGCATTTCTTGTTGGGGCTGGACTTCAGGCTTTTCAGCAGTTCACTGGTATCAACACAGTCATG TACTATAGCCCAACCATTGTGCAGATGGCTGGTTTTAGTTCCAACCAATTAGCACTTCTCCTGTCCCTTGTTATTGCTGCCATGAATGCCGCCGGAACAG TTCTTGGCATTTACCTTATTGATCATTTCGGGAGGAAAAAGTTGGCCATCTCAAGCTTAGCTGGTGTAATTGCATCACTTTTCATTCTTGCTGGAGCATT TTTTGGCAAGTCATCTGGCTCTTCAAATGAACTCTATGGGTGGATTGCAGTTTTGGGGTTAGCCCTGTATATTGCTTGCTTCTCACCAGGGATGGGACCT GTTCCATGGACTGTGAACTCAGAGATATATCCCGAACAATATCGAGGAATATGCGGGGGCATGTCAGCTACTGTTAACTGGATCTCCAATCTGATAGTAG CCCAAACTTTCCTTTCAATTGCCGAAGCAGTAGGAACAGGTTCGACTTTCTTGATGCTTGCGGGCATAGCAGTGCTCGCAGTTGTGTTTGTGATTATGTA TGTCCCAGAGACCATGGGGCTGGCATTTGTTGAAGTTGAGCAGATATGGAAGGAGAGGGCATGGGGCAGTAGTTACAACACAGAAAGCCTTCTTGAGCAA GGAAACGACAAATGA
AA sequence Show only first row Show all	>Potri.017G032200.1 pacid=42814423 polypeptide=Potri.017G032200.1.p locus=Potri.017G032200 ID=Potri.017G032200.1.v4.1 annot-version=v4.1 MTIQPSPGSSGFLPGSSGYLDMFPERRMSYFSNSYVIGLTVAAGIGGLLFGYDTGVISGALLYIKDEFEVVNQSSFLQETIVSMALVGAIIGAAGGGWIN DAYGRKKATLLADVVFAAGSIVMAAAPNPYVLILGRLFVGLGVGIASVTAPVYIAEASPSEVRGGLVSTNVLMITGGQFLSYLVNLAFTEVPGTWRWMVG VAAVPAVIQFCIMLCLPESPRWLFMKDNKAKAIAILSKIYDVARLQDEIDHLSITEEEECQKRNDVKISDVFKSKEIRLAFLVGAGLQAFQQFTGINTVM YYSPTIVQMAGFSSNQLALLLSLVIAAMNAAGTVLGIYLIDHFGRKKLAISSLAGVIASLFILAGAFFGKSSGSSNELYGWIAVLGLALYIACFSPGMGP VPWTVNSEIYPEQYRGICGGMSATVNWISNLIVAQTFLSIAEAVGTGSTFLMLAGIAVLAVVFVIMYVPETMGLAFVEVEQIWKERAWGSSYNTESLLEQ GNDK

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G43330		ATINT1	inositol transporter 1 (.1)		Potri.017G032200 [exp]	0	1
AT3G51130			unknown protein		Potri.007G015800 [exp]	12.60	0.6897
AT1G73830	bHLH	bHLH050, BEE3	BR enhanced expression 3 (.1.2...		Potri.012G055700 [exp]	18.81	0.6732
AT3G23150		ETR2	ethylene response 2, Signal tr...		Potri.010G074300 [exp]	20.61	0.6238	Pt-ETR2.3
AT3G59900		ARGOS	auxin-regulated gene involved ...		Potri.007G146401 [exp]	28.61	0.6074
AT2G44080		ARL	ARGOS-like (.1)		Potri.017G001400 [exp]	33.15	0.6572
AT4G04960			Concanavalin A-like lectin pro...		Potri.011G053100 [exp]	34.46	0.6594
AT2G40940		ERS1	ethylene response sensor 1 (.1...		Potri.002G201500 [exp]	35.77	0.5781	ERS1.1,ETR1
AT2G42160		BRIZ1	BRAP2 RING ZnF UBP domain-cont...		Potri.018G128100 [exp]	40.74	0.6118
AT1G67856			RING/U-box superfamily protein...		Potri.008G185800 [exp]	45.39	0.6467
AT3G23150		ETR2	ethylene response 2, Signal tr...		Potri.008G164400 [exp]	49.49	0.6459	ETR2.2

Compare expression of checked genes

Potri.017G032200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.