Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G43330 273 / 5e-90 ATINT1 inositol transporter 1 (.1) AT1G30220 137 / 7e-38 ATINT2 ARABIDOPSIS THALIANA INOSITOL TRANSPORTER 2, inositol transporter 2 (.1) AT2G35740 120 / 1e-31 ATINT3 nositol transporter 3 (.1) AT4G16480 117 / 1e-30 ATINT4 inositol transporter 4 (.1) AT2G16130 88 / 2e-20 ATPMT2, AtPLT2 ARABIDOPSIS THALIANA POLYOL/MONOSACCHARIDE TRANSPORTER 2, polyol/monosaccharide transporter 2 (.1) AT2G48020 88 / 3e-20 Major facilitator superfamily protein (.1.2) AT5G59250 87 / 5e-20 Major facilitator superfamily protein (.1) AT3G18830 84 / 5e-19 ATPMT5, AtPLT5 ARABIDOPSIS THALIANA POLYOL/MONOSACCHARIDE TRANSPORTER 5, POLYOL TRANSPORTER 5, polyol/monosaccharide transporter 5 (.1) AT2G16120 84 / 5e-19 ATPMT1, AtPLT1 ARABIDOPSIS THALIANA POLYOL/MONOSACCHARIDE TRANSPORTER 1, polyol/monosaccharide transporter 1 (.1) AT5G18840 84 / 9e-19 Major facilitator superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G032200 [exp] 352 / 4e-121 AT2G43330 743 / 0.0 inositol transporter 1 (.1) Potri.007G126800 [exp] 312 / 1e-105 AT2G43330 710 / 0.0 inositol transporter 1 (.1) Potri.006G015200 [exp] 125 / 1e-33 AT4G16480 811 / 0.0 inositol transporter 4 (.1) Potri.016G010600 [exp] 122 / 2e-32 AT4G16480 825 / 0.0 inositol transporter 4 (.1) Potri.004G133420 [exp] 107 / 5e-29 AT1G30220 328 / 2e-110 ARABIDOPSIS THALIANA INOSITOL TRANSPORTER 2, inositol transporter 2 (.1) Potri.006G015300 [exp] 99 / 5e-24 AT4G16480 788 / 0.0 inositol transporter 4 (.1) Potri.004G152300 [exp] 89 / 1e-20 AT3G18830 625 / 0.0 ARABIDOPSIS THALIANA POLYOL/MONOSACCHARIDE TRANSPORTER 5, POLYOL TRANSPORTER 5, polyol/monosaccharide transporter 5 (.1) Potri.001G244100 [exp] 88 / 2e-20 AT5G59250 598 / 0.0 Major facilitator superfamily protein (.1) Potri.006G158700 [exp] 84 / 7e-19 AT3G18830 477 / 6e-165 ARABIDOPSIS THALIANA POLYOL/MONOSACCHARIDE TRANSPORTER 5, POLYOL TRANSPORTER 5, polyol/monosaccharide transporter 5 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025565 [exp] 273 / 4e-90 AT2G43330 768 / 0.0 inositol transporter 1 (.1) Lus10027026 [exp] 251 / 9e-82 AT2G43330 769 / 0.0 inositol transporter 1 (.1) Lus10043120 [exp] 234 / 5e-76 AT2G43330 593 / 0.0 inositol transporter 1 (.1) Lus10028118 [exp] 141 / 3e-39 AT1G30220 893 / 0.0 ARABIDOPSIS THALIANA INOSITOL TRANSPORTER 2, inositol transporter 2 (.1) Lus10042820 [exp] 141 / 4e-39 AT1G30220 890 / 0.0 ARABIDOPSIS THALIANA INOSITOL TRANSPORTER 2, inositol transporter 2 (.1) Lus10010500 [exp] 124 / 3e-33 AT4G16480 823 / 0.0 inositol transporter 4 (.1) Lus10017561 [exp] 123 / 1e-32 AT4G16480 820 / 0.0 inositol transporter 4 (.1) Lus10000534 [exp] 109 / 2e-30 AT4G16480 187 / 4e-57 inositol transporter 4 (.1) Lus10039050 [exp] 107 / 4e-27 AT4G16480 769 / 0.0 inositol transporter 4 (.1) Lus10010501 [exp] 104 / 7e-26 AT4G16480 755 / 0.0 inositol transporter 4 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0015 [poplar] [flax] MFS PF00083 [poplar] [flax] Sugar_tr Sugar (and other) transporter
Representative CDS sequence Show only first row Show all	>Potri.017G032400.1 pacid=42812876 polypeptide=Potri.017G032400.1.p locus=Potri.017G032400 ID=Potri.017G032400.1.v4.1 annot-version=v4.1 ATGGCTGGTTTTAGTTCCAACCAGCTAGCACTTCTCCTGTCCCTTGTTATTGCTGCCATGAATGCCGCTGGAACAGTTCTTGGCATTTACCTTATTGATC ATTTCGGGAGGAAAAGGTTGGCCATCTCAAGCTTAGCTGGTGTAATTGCATCACTTTTCATTCTTGCTGGAGCATTTTTTGGCAAGTCATCTGGTTCTTC AAATGAACTCTATGGGTGGATTGCAGTTTTGGGGTTAGCCCTGTGTATTGCTTGCTTCTCACCAGGAATGGGACCTGTTCCATGGACTGTGAACTCGGAG ATATATCCCGAACAATATCGAGGAATATGCGGGGGCATGTCAGCTACTGTTAACTGGATCTCCAATCTGATAGTAGCCCAAACTTTCCTTTCAATTGCCG AAGCAGTAGGAACAGGTTCGACTTTCTTGATGCTTGCGGGCACAGCAGTGCTCGCAGTTGTGTTTGTGATTATGTATGTCCCAGAGACCATGGGGCTGGC ATTTGTTGAAGTTGAGCAGATAGGGAAGGAGAGGGCATGGGGCAGTAGTTACAACACAGAAAGCCTTCTTGATCAAGGAAACGACAAATGA
AA sequence Show only first row Show all	>Potri.017G032400.1 pacid=42812876 polypeptide=Potri.017G032400.1.p locus=Potri.017G032400 ID=Potri.017G032400.1.v4.1 annot-version=v4.1 MAGFSSNQLALLLSLVIAAMNAAGTVLGIYLIDHFGRKRLAISSLAGVIASLFILAGAFFGKSSGSSNELYGWIAVLGLALCIACFSPGMGPVPWTVNSE IYPEQYRGICGGMSATVNWISNLIVAQTFLSIAEAVGTGSTFLMLAGTAVLAVVFVIMYVPETMGLAFVEVEQIGKERAWGSSYNTESLLDQGNDK

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G43330		ATINT1	inositol transporter 1 (.1)		Potri.017G032400 [exp]	0	1
AT2G28370			Uncharacterised protein family...		Potri.004G211400 [exp]	1.00	0.9413
AT1G06620			2-oxoglutarate (2OG) and Fe(II...		Potri.017G135800 [exp]	3.46	0.8774
AT5G25240			unknown protein		Potri.006G259300 [exp]	4.00	0.8974
AT3G23150		ETR2	ethylene response 2, Signal tr...		Potri.008G164400 [exp]	7.14	0.8425	ETR2.2
AT3G54790			ARM repeat superfamily protein...		Potri.002G037700 [exp]	8.00	0.8425
AT1G67856			RING/U-box superfamily protein...		Potri.008G185800 [exp]	10.77	0.8134
AT3G21610			Acid phosphatase/vanadium-depe...		Potri.014G156000 [exp]	12.24	0.8591
AT4G30960		CIPK6, SIP3, Sn...	SNF1-RELATED PROTEIN KINASE 3....		Potri.006G186200 [exp]	14.14	0.8373	CIPK6.2
AT1G68090		ANN5, ANNAT5	ANNEXIN ARABIDOPSIS THALIANA 5...		Potri.010G101800 [exp]	14.49	0.8411	Pt-ANN5.1
AT3G51130			unknown protein		Potri.007G015800 [exp]	15.09	0.8029

Compare expression of checked genes

Potri.017G032400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.