Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G05680 446 / 2e-154 UGT74E2 Uridine diphosphate glycosyltransferase 74E2 (.1) AT1G05675 443 / 2e-153 UDP-Glycosyltransferase superfamily protein (.1) AT2G31750 415 / 4e-142 UGT74D1 UDP-glucosyl transferase 74D1 (.1) AT2G43820 413 / 1e-141 SGT1, ATSAGT1, GT, UGT74F2 UDP-glucose:salicylic acid glucosyltransferase 1, Arabidopsis thaliana salicylic acid glucosyltransferase 1, UDP-glucosyltransferase 74F2 (.1) AT2G43840 402 / 3e-137 UGT74F1 UDP-glycosyltransferase 74 F1 (.1.2) AT1G24100 397 / 2e-135 UGT74B1 UDP-glucosyl transferase 74B1 (.1) AT2G31790 390 / 1e-132 UDP-Glycosyltransferase superfamily protein (.1) AT4G15480 303 / 3e-98 UGT84A1 UDP-Glycosyltransferase superfamily protein (.1) AT4G15490 296 / 1e-95 UGT84A3 UDP-Glycosyltransferase superfamily protein (.1) AT3G21560 295 / 5e-95 UGT84A2 UDP-Glycosyltransferase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G032733 [exp] 914 / 0 AT1G05680 444 / 6e-154 Uridine diphosphate glycosyltransferase 74E2 (.1) Potri.017G032500 [exp] 890 / 0 AT1G05680 446 / 1e-154 Uridine diphosphate glycosyltransferase 74E2 (.1) Potri.017G032300 [exp] 888 / 0 AT1G05675 465 / 6e-162 UDP-Glycosyltransferase superfamily protein (.1) Potri.004G179300 [exp] 692 / 0 AT1G05680 446 / 1e-154 Uridine diphosphate glycosyltransferase 74E2 (.1) Potri.007G140300 [exp] 675 / 0 AT1G05680 457 / 4e-159 Uridine diphosphate glycosyltransferase 74E2 (.1) Potri.001G389200 [exp] 528 / 0 AT1G05680 494 / 2e-173 Uridine diphosphate glycosyltransferase 74E2 (.1) Potri.014G175000 [exp] 473 / 9e-165 AT2G43840 411 / 8e-141 UDP-glycosyltransferase 74 F1 (.1.2) Potri.007G140500 [exp] 439 / 1e-151 AT2G43840 463 / 3e-161 UDP-glycosyltransferase 74 F1 (.1.2) Potri.015G071900 [exp] 433 / 3e-149 AT1G24100 427 / 5e-147 UDP-glucosyl transferase 74B1 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008742 [exp] 468 / 5e-163 AT2G43840 478 / 6e-167 UDP-glycosyltransferase 74 F1 (.1.2) Lus10014148 [exp] 441 / 2e-152 AT2G43840 407 / 2e-139 UDP-glycosyltransferase 74 F1 (.1.2) Lus10024486 [exp] 437 / 1e-150 AT1G05680 389 / 4e-132 Uridine diphosphate glycosyltransferase 74E2 (.1) Lus10006353 [exp] 435 / 1e-149 AT2G43820 398 / 1e-135 UDP-glucose:salicylic acid glucosyltransferase 1, Arabidopsis thaliana salicylic acid glucosyltransferase 1, UDP-glucosyltransferase 74F2 (.1) Lus10009412 [exp] 425 / 4e-146 AT2G43820 474 / 1e-165 UDP-glucose:salicylic acid glucosyltransferase 1, Arabidopsis thaliana salicylic acid glucosyltransferase 1, UDP-glucosyltransferase 74F2 (.1) Lus10020556 [exp] 419 / 1e-143 AT2G43820 472 / 1e-164 UDP-glucose:salicylic acid glucosyltransferase 1, Arabidopsis thaliana salicylic acid glucosyltransferase 1, UDP-glucosyltransferase 74F2 (.1) Lus10006352 [exp] 417 / 4e-143 AT2G43820 414 / 6e-142 UDP-glucose:salicylic acid glucosyltransferase 1, Arabidopsis thaliana salicylic acid glucosyltransferase 1, UDP-glucosyltransferase 74F2 (.1) Lus10024117 [exp] 417 / 4e-142 AT1G05675 385 / 4e-130 UDP-Glycosyltransferase superfamily protein (.1) Lus10020559 [exp] 407 / 1e-138 AT2G43820 436 / 3e-150 UDP-glucose:salicylic acid glucosyltransferase 1, Arabidopsis thaliana salicylic acid glucosyltransferase 1, UDP-glucosyltransferase 74F2 (.1) Lus10010712 [exp] 406 / 1e-138 AT1G24100 462 / 1e-160 UDP-glucosyl transferase 74B1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0113 [poplar] [flax] GT-B PF00201 [poplar] [flax] UDPGT UDP-glucoronosyl and UDP-glucosyl transferase
Representative CDS sequence Show only first row Show all	>Potri.017G032700.1 pacid=42814207 polypeptide=Potri.017G032700.1.p locus=Potri.017G032700 ID=Potri.017G032700.1.v4.1 annot-version=v4.1 ATGGAGAAGCAAGAAAGAATCTGTCATGTAGTGGTCATACCTTATCCTGCTCAAGGTCACATTAACCCCATGATCCAGTTCTCCAAGCGCCTAGCCTCCA AAGGACTCCAAGTAACACTGGTCATCTTCTCAAGCCAGACGCTCTCGACGCCTGCCTCGCTTGGCTCAGTCAAAGTGGTGACCATTTCTGATAGTTCTGA TACAGGCAGCAGTTCCATAGGTGACCTTCTAAAACAATTCCAAGCTACAGTGGCACCAAAACTGCCACAGCTCGTTGTAGAACTAGGTATCTCTTCTGGG CATCCAGTAAGTTGCCTAGTGTATGACTCATTCATGCCTTGGGTTCTAGAGATAGCTAGACAGCTTGGCCTCATTGGGGCTTCCTTCTTCACACAGTCAT GTGCTGTTAACTCTGTCTACTACCAAATCCATGAGGGGCAGCTAAAGATTCCACTAGAGAAGTTTCCTGTATCAGTTCCAGGGCTGCCACCTCTAGACGT TGATGAACTGCCATCATTCGTGCACGACATGGAATCAGAATACTCATCTATACTTACCCTAGTAGTCAATCAGTTTTTGAATTTCAGGGGACCTGATTGG GTCTTTGTGAACAGTTTCAACTCCCTGGAGGAGGAGGTGGTAAACTGCCTGGCAAGCCAGAGGTCAATCAAGCCAATAGGACCCATGATTCCATCAGTTT ACTTGGACAGGCAGCTAGAGGATGACACAGAGTATGGCCTCAGCCTCTTCAAACCTGCTCTCGACGGTTGCATGGAATGGCTAGACTCAAAGGAAACTGG CTCCGTGGTTTACGCGTCATTTGGAAGCTTGGCTGCTCTGGGAGAAGAGCAAATGGCAGAAATAGCTTGGGGCCTAAGGAGGAGCGACTGCTACTTCTTG TGGGTAGTCAGAGAATCGGAAGAGAAAAAACTTCCATGTAACTTTGTGGAGGGGTCCTCAGAGAAGGGTCTGATTGTGACCTGGAGCCCTCAGCTAGAGG TTCTGTCTCACAAGTCTGTTGGTTGCTTCATGACTCATTGCGGGTGGAACTCGACGCTTGAAGCGTTGAGCTTAGGAGTGCCAATGGTGGCAGTGCCACA GTGGACTGATCAACCAACAAATGCGAAGTACATAGCAGATGTTTGGCGTGTAGGAGTTAGAGTGAAGGCAAATGAAAAGGGGATTGTCACAAAGGAAGAG TTAGAAAAGTGTACGAGGGAAGTCATGGAAGGTGAAAGAGGGAGTGAGATGAGAAGGAATTCTGAGAAATGGAAGAAACTAGCCAAAACAGCCATGGGTG AAGGTGGAAGCTCTGATAAGAATATTACGGAATTTGCAGCAAAGATTGCTAGCAAGTTCAATGAAACCACAGATTCAAAAGCGTGA
AA sequence Show only first row Show all	>Potri.017G032700.1 pacid=42814207 polypeptide=Potri.017G032700.1.p locus=Potri.017G032700 ID=Potri.017G032700.1.v4.1 annot-version=v4.1 MEKQERICHVVVIPYPAQGHINPMIQFSKRLASKGLQVTLVIFSSQTLSTPASLGSVKVVTISDSSDTGSSSIGDLLKQFQATVAPKLPQLVVELGISSG HPVSCLVYDSFMPWVLEIARQLGLIGASFFTQSCAVNSVYYQIHEGQLKIPLEKFPVSVPGLPPLDVDELPSFVHDMESEYSSILTLVVNQFLNFRGPDW VFVNSFNSLEEEVVNCLASQRSIKPIGPMIPSVYLDRQLEDDTEYGLSLFKPALDGCMEWLDSKETGSVVYASFGSLAALGEEQMAEIAWGLRRSDCYFL WVVRESEEKKLPCNFVEGSSEKGLIVTWSPQLEVLSHKSVGCFMTHCGWNSTLEALSLGVPMVAVPQWTDQPTNAKYIADVWRVGVRVKANEKGIVTKEE LEKCTREVMEGERGSEMRRNSEKWKKLAKTAMGEGGSSDKNITEFAAKIASKFNETTDSKA

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G05680		UGT74E2	Uridine diphosphate glycosyltr...		Potri.017G032700 [exp]	0	1
AT2G43820		SGT1, ATSAGT1, ...	UDP-glucose:salicylic acid glu...		Potri.017G032766 [exp]	1.00	0.9963
AT1G05680		UGT74E2	Uridine diphosphate glycosyltr...		Potri.017G032733 [exp]	1.41	0.9909
AT1G05680		UGT74E2	Uridine diphosphate glycosyltr...		Potri.017G032500 [exp]	2.44	0.9812	ZOG1.12
AT2G45400		BEN1	NAD(P)-binding Rossmann-fold s...		Potri.006G087200 [exp]	3.74	0.9590	Pt-DFR1.3
AT1G05675			UDP-Glycosyltransferase superf...		Potri.017G032300 [exp]	4.00	0.9766
AT5G42800		M318, TT3, DFR	dihydroflavonol 4-reductase (....		Potri.001G093300 [exp]	5.00	0.9658
AT2G37710		RLK	receptor lectin kinase (.1)		Potri.006G088680 [exp]	5.47	0.9475
AT2G37710		RLK	receptor lectin kinase (.1)		Potri.006G088600 [exp]	6.00	0.9445
AT1G13680			PLC-like phosphodiesterases su...		Potri.011G144900 [exp]	6.48	0.9592
AT5G11330			FAD/NAD(P)-binding oxidoreduct...		Potri.018G032500 [exp]	6.70	0.9507

Compare expression of checked genes

Potri.017G032700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.