Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G05870 191 / 8e-62 Protein of unknown function (DUF1685) (.1), Protein of unknown function (DUF1685) (.2), Protein of unknown function (DUF1685) (.3), Protein of unknown function (DUF1685) (.4) AT2G31560 187 / 3e-60 Protein of unknown function (DUF1685) (.1), Protein of unknown function (DUF1685) (.2) AT2G43340 170 / 8e-54 Protein of unknown function (DUF1685) (.1) AT3G22690 99 / 6e-24 unknown protein AT4G33985 74 / 9e-17 Protein of unknown function (DUF1685) (.1) AT5G28690 74 / 2e-16 Protein of unknown function (DUF1685) (.1) AT3G04700 74 / 3e-16 Protein of unknown function (DUF1685) (.1) AT3G50350 73 / 3e-16 Protein of unknown function (DUF1685) (.1), Protein of unknown function (DUF1685) (.2) AT3G04710 74 / 3e-15 TPR10 tetratricopeptide repeat 10, ankyrin repeat family protein (.1.2.3) AT1G08790 71 / 3e-15 Protein of unknown function (DUF1685) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G126700 [exp] 256 / 1e-87 AT1G05870 188 / 7e-61 Protein of unknown function (DUF1685) (.1), Protein of unknown function (DUF1685) (.2), Protein of unknown function (DUF1685) (.3), Protein of unknown function (DUF1685) (.4) Potri.013G042400 [exp] 90 / 2e-22 AT1G08790 151 / 2e-46 Protein of unknown function (DUF1685) (.1) Potri.005G138100 [exp] 81 / 7e-19 AT4G33985 139 / 2e-42 Protein of unknown function (DUF1685) (.1) Potri.005G055100 [exp] 79 / 3e-18 AT1G08790 126 / 1e-36 Protein of unknown function (DUF1685) (.1) Potri.007G043900 [exp] 77 / 1e-17 AT4G33985 134 / 3e-40 Protein of unknown function (DUF1685) (.1) Potri.009G101300 [exp] 71 / 1e-15 AT4G33985 130 / 2e-39 Protein of unknown function (DUF1685) (.1) Potri.014G111000 [exp] 65 / 2e-12 AT2G46940 148 / 4e-43 unknown protein Potri.002G185700 [exp] 55 / 4e-09 AT2G46940 111 / 4e-29 unknown protein Potri.004G059900 [exp] 44 / 2e-05 AT2G42760 99 / 6e-25 unknown protein
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027022 [exp] 180 / 4e-57 AT2G31560 183 / 1e-58 Protein of unknown function (DUF1685) (.1), Protein of unknown function (DUF1685) (.2) Lus10025562 [exp] 179 / 5e-57 AT1G05870 183 / 1e-58 Protein of unknown function (DUF1685) (.1), Protein of unknown function (DUF1685) (.2), Protein of unknown function (DUF1685) (.3), Protein of unknown function (DUF1685) (.4) Lus10021997 [exp] 86 / 2e-21 AT1G08790 129 / 4e-39 Protein of unknown function (DUF1685) (.1) Lus10042536 [exp] 86 / 3e-21 AT1G08790 141 / 2e-43 Protein of unknown function (DUF1685) (.1) Lus10006560 [exp] 83 / 7e-20 AT1G08790 166 / 2e-52 Protein of unknown function (DUF1685) (.1) Lus10014064 [exp] 66 / 1e-13 AT4G33985 145 / 2e-45 Protein of unknown function (DUF1685) (.1) Lus10019852 [exp] 65 / 4e-13 AT4G33985 149 / 9e-47 Protein of unknown function (DUF1685) (.1) Lus10002400 [exp] 63 / 3e-12 AT4G33985 150 / 7e-47 Protein of unknown function (DUF1685) (.1) Lus10027898 [exp] 58 / 2e-10 AT4G33985 141 / 2e-43 Protein of unknown function (DUF1685) (.1) Lus10038023 [exp] 57 / 1e-09 AT2G46940 162 / 4e-49 unknown protein
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF07939 [poplar] [flax] DUF1685 Protein of unknown function (DUF1685)
Representative CDS sequence Show only first row Show all	>Potri.017G032800.1 pacid=42813932 polypeptide=Potri.017G032800.1.p locus=Potri.017G032800 ID=Potri.017G032800.1.v4.1 annot-version=v4.1 ATGGGCAGCATCCCTTGTGAACAAGAATCTTGGGTTTCTACGAGAAACCTAGGAAATGTTCAAGAAAATGATCAAACCCATAGCCTAGATTTTCTTGATG ATGATAATTACAATGATGATGATCTTTTGTGTCAAGAGACTGAGCAAGTGTGGCAAAACATGAACCAAAACAACACCTTTACCAAAAACTTCAACAAGGG TTCTCTTCGAAAGATCCTGAGAAAGAAGAGTCAAGTGCTGTTAGAAGGGTATGTGGAAGGAAGAAGTAACAGCGAAGATGAGTTGAAGAGGACAAAGAGT TTGACAGATGATGATCTTGATGAGTTAAAAGGGTGCTTGGATCTTGGGTTTGGTTTTAGTTATGATGAGATCCCTGAGCTTTGCAATACTTTGCCAGCTC TTGAACTTTGTTACTCAATGAGTCAGAAGTTTCTTGACGAGCACCAGAAGCCTCCTGAGAGTTCTTCTCCTGCTGAGGCCGAGGCTGAGGCTGCAAGTTC TAGTCCCATTGCTAATTGGAAGATCTCTAGTCCTGGTGACCATCCTGAAGATGTTAAAGCAAGACTCAAATTTTGGGCACAGACTGTGGCATGCACTGTT AGATTATGCAGCTGA
AA sequence Show only first row Show all	>Potri.017G032800.1 pacid=42813932 polypeptide=Potri.017G032800.1.p locus=Potri.017G032800 ID=Potri.017G032800.1.v4.1 annot-version=v4.1 MGSIPCEQESWVSTRNLGNVQENDQTHSLDFLDDDNYNDDDLLCQETEQVWQNMNQNNTFTKNFNKGSLRKILRKKSQVLLEGYVEGRSNSEDELKRTKS LTDDDLDELKGCLDLGFGFSYDEIPELCNTLPALELCYSMSQKFLDEHQKPPESSSPAEAEAEAASSSPIANWKISSPGDHPEDVKARLKFWAQTVACTV RLCS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G05870			Protein of unknown function (D...		Potri.017G032800 [exp]	0	1
AT1G21830			unknown protein		Potri.002G083900 [exp]	5.00	0.7876
AT5G64530	NAC	ANAC104, XND1	Arabidopsis NAC domain contain...		Potri.001G206900 [exp]	14.24	0.7032
					Potri.006G037700 [exp]	16.88	0.7132
AT4G24520		AR1, ATR1	ARABIDOPSIS CYTOCHROME REDUCTA...		Potri.005G153800 [exp]	33.40	0.6793
AT2G30520		RPT2	ROOT PHOTOTROPISM 2, Phototrop...		Potri.013G159000 [exp]	45.59	0.7042	Pt-RPT2.4
AT4G21760		BGLU47	beta-glucosidase 47 (.1)		Potri.001G403900 [exp]	45.69	0.6742
AT5G49650		XK2, XK-2	XYLULOSE KINASE 2, xylulose ki...		Potri.019G077600 [exp]	45.78	0.6528
AT1G44790			ChaC-like family protein (.1)		Potri.005G176300 [exp]	57.96	0.6483
AT5G39530			Protein of unknown function (D...		Potri.017G087500 [exp]	74.16	0.6613
					Potri.006G060000 [exp]	89.09	0.6946

Compare expression of checked genes

Potri.017G032800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.