Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G65560 141 / 5e-35 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT3G53700 137 / 1e-33 MEE40 maternal effect embryo arrest 40, Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G63130 131 / 5e-32 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT5G01110 129 / 3e-31 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G63230 121 / 3e-30 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G12700 124 / 8e-30 RPF1 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) AT1G05670 124 / 9e-30 Pentatricopeptide repeat (PPR-like) superfamily protein (.1), Pentatricopeptide repeat (PPR-like) superfamily protein (.2) AT1G12620 123 / 2e-29 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G63080 120 / 1e-28 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT3G22470 120 / 1e-28 Pentatricopeptide repeat (PPR) superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G046000 [exp] 135 / 3e-33 AT1G63130 405 / 9e-133 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.006G271200 [exp] 132 / 2e-32 AT1G62930 475 / 3e-161 RNA processing factor 3, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.013G032600 [exp] 131 / 3e-32 AT1G12700 493 / 2e-166 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Potri.009G105600 [exp] 131 / 5e-32 AT5G39710 1022 / 0.0 EMBRYO DEFECTIVE 2745, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.005G245400 [exp] 129 / 7e-32 AT1G20300 768 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.013G034400 [exp] 130 / 1e-31 AT3G22470 476 / 1e-161 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.006G242200 [exp] 129 / 2e-31 AT1G62930 472 / 4e-160 RNA processing factor 3, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.005G045000 [exp] 129 / 2e-31 AT1G12700 502 / 4e-170 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Potri.005G046200 [exp] 129 / 2e-31 AT1G12700 501 / 5e-170 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036090 [exp] 135 / 6e-33 AT1G52620 755 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10012328 [exp] 132 / 3e-32 AT3G53700 1010 / 0.0 maternal effect embryo arrest 40, Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10006373 [exp] 132 / 3e-32 AT3G53700 1012 / 0.0 maternal effect embryo arrest 40, Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10039056 [exp] 131 / 7e-32 AT5G64320 832 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10042529 [exp] 129 / 7e-31 AT5G65560 498 / 1e-160 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10027916 [exp] 127 / 2e-30 AT5G39710 1038 / 0.0 EMBRYO DEFECTIVE 2745, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10027914 [exp] 124 / 2e-29 AT5G39710 1025 / 0.0 EMBRYO DEFECTIVE 2745, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10026791 [exp] 124 / 2e-29 AT1G52620 741 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10021989 [exp] 124 / 3e-29 AT5G65560 498 / 2e-157 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10026558 [exp] 123 / 4e-29 AT5G65560 881 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [poplar] [flax] TPR PF01535 [poplar] [flax] PPR PPR repeat CL0020 [poplar] [flax] TPR PF13041 [poplar] [flax] PPR_2 PPR repeat family
Representative CDS sequence Show only first row Show all	>Potri.017G033000.1 pacid=42813496 polypeptide=Potri.017G033000.1.p locus=Potri.017G033000 ID=Potri.017G033000.1.v4.1 annot-version=v4.1 ATGTTTTGTTCTAGAGCTAGACAACATGGAACCCTTTCTCTCCTTTCAAATCTCTTCAAAAATTCATCAAAACCCTCTTTATTTTCATCAATCTCAAATC CCAATATTTCAAACCCAAAAACCGCCACCAAGAGACCAACTTCACTTGCTACACTTAACCCACAAGAAACTTCACTGACTGTAAGTATTACTTCCTCTCC TGTTGCTTCAATATGCTCTTTACTTTCTAATAGTGTTAAAGAACCGGTGAAGATTGAGTCTTTGTTGGAGGACTATAAAGAAATGTTGAATTCTGATATT GTGCTGCAAGTCTTGATGAATTACAAGCAGTTAGGGAGGGTTAAAACATTAGAATTCTTTTCTTGGGCTGGGATGCAAATGGGGTTTAAGTTTGATGATT GTGTGATTGAGTACATGGTTGATTTCTTAGGAAGGAGGAAGCTTTTTGATGATATGAAGTGTTTCTTGATGACAGTTTTGTTTCATAATGGTCGTGTGAC ATGTCGTGCATTTTCTATTTGTATTAGGTTCTTAGGCAGGCAAGGGAGGTTTAGAGAAGCCCTTTGTTTGTTTCAAGAAATGGAGACAAAGTTTAATTGT AGACCTGATAATTTTGTGTATAATAATATGCTTTATGTGCTTTGTAAGAAGGACACATCTGGGGAGCTAATTGATGTTGCGCTTAGTATCTTTCGAGGAA TTGAATCGCCAGATACATATTCGTACAGTAATGTTCTTGTCGGTTTGTGTAAATTTGGTAGGTTTGAGACCGCCATTGAATTTTTTCAAGAAATGGGTAG GGCTAGATTGGTGCCAACACGGTCTGCAGTGAATTTTCTTATGAGGGAGTTGTGTTTGTTGAGTGCAAAAGAAGGGGCTGTCAACGAAGTTAGGGTACAT AGTTCTCGTAAACCATATACAATTTTAGTTCCCAATGTGGGTCCGAAGAGTGGTGCTATACGTCCTGCTGTTGGCGTGTTTTTGGCAGTTTGTGATCTTG GTTTATTGCCTAGCACTTTTGTTATAATCCAGCTCATAACAGAGCTTTGTCGACTGGGAAAGATGACAGAGGCTTTTGAGATTCTAAAAGTAGTCGAGGA GAGAAAGCAAAATTGTGTGGCTGAGGGTTACTCCATTGTGATGCAGGCTTTATGTGAATATCGCTTAGTTGAGGAAGCTAGTCATTTGTTTGGAAGAATG CTTTCACTTGAATTGAAGCCAAAGTTGGTAGTTTACAATTCTATTATTTGTATGCTATGTAAAGTGGGGAGATTGGATGATGCCCAGAGGGTGTTTCAGA TAATGAGCAAGAAAAGATGCCTTCCGGATAGTGTAACATATACTGCATTGGTTCATGCTTATGGCGAAGCTAGGAATTGGGAGGTTGCTTATGACTTATT GATGGAAATGTTAGGGTTAGGTTGGATTCCACATTTTCATGCGTATACTTTGGTGGATAAACTGTTGAGAGAACATGGGCGAATAGATTTGTCCAATAAA TTGGAAAGGAAGTTGGAATCACAAATCTTGCATAAGCATTGTAAAGCAGGTCAATTGGAGGCTGCTTATGAGAAACTGAGATCAATGCTTGAAAAAGGTT TCTACCCACCCATGTACGTAAGAGATGCTTTTGAGCATGCATTTCAAAAGTATGGCAAGTTGGAAATAGCTCGTGAGTTGCTAGAGAATATGGACAAAGC TTGTGAGCCTTCTACGACAGAAATTAGGAGTTCTTGA
AA sequence Show only first row Show all	>Potri.017G033000.1 pacid=42813496 polypeptide=Potri.017G033000.1.p locus=Potri.017G033000 ID=Potri.017G033000.1.v4.1 annot-version=v4.1 MFCSRARQHGTLSLLSNLFKNSSKPSLFSSISNPNISNPKTATKRPTSLATLNPQETSLTVSITSSPVASICSLLSNSVKEPVKIESLLEDYKEMLNSDI VLQVLMNYKQLGRVKTLEFFSWAGMQMGFKFDDCVIEYMVDFLGRRKLFDDMKCFLMTVLFHNGRVTCRAFSICIRFLGRQGRFREALCLFQEMETKFNC RPDNFVYNNMLYVLCKKDTSGELIDVALSIFRGIESPDTYSYSNVLVGLCKFGRFETAIEFFQEMGRARLVPTRSAVNFLMRELCLLSAKEGAVNEVRVH SSRKPYTILVPNVGPKSGAIRPAVGVFLAVCDLGLLPSTFVIIQLITELCRLGKMTEAFEILKVVEERKQNCVAEGYSIVMQALCEYRLVEEASHLFGRM LSLELKPKLVVYNSIICMLCKVGRLDDAQRVFQIMSKKRCLPDSVTYTALVHAYGEARNWEVAYDLLMEMLGLGWIPHFHAYTLVDKLLREHGRIDLSNK LERKLESQILHKHCKAGQLEAAYEKLRSMLEKGFYPPMYVRDAFEHAFQKYGKLEIARELLENMDKACEPSTTEIRSS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G53700		MEE40	maternal effect embryo arrest ...		Potri.017G033000 [exp]	0	1
AT5G22040			unknown protein		Potri.008G001700 [exp]	4.89	0.8623
AT3G10630			UDP-Glycosyltransferase superf...		Potri.008G018200 [exp]	5.65	0.8700
AT4G22860			Cell cycle regulated microtubu...		Potri.001G114400 [exp]	5.91	0.8638
AT2G22410		SLO1	SLOW GROWTH 1 (.1)		Potri.001G019500 [exp]	6.55	0.8979
AT5G11310			Pentatricopeptide repeat (PPR)...		Potri.006G247400 [exp]	7.54	0.8408
AT5G40400			Pentatricopeptide repeat (PPR)...		Potri.017G071600 [exp]	7.93	0.8728
AT3G17830			Molecular chaperone Hsp40/DnaJ...		Potri.015G035300 [exp]	10.95	0.8575
AT5G18390			Pentatricopeptide repeat (PPR)...		Potri.019G025700 [exp]	11.31	0.8758
AT2G37035			unknown protein		Potri.016G091400 [exp]	11.95	0.8509
AT3G48810			Pentatricopeptide repeat (PPR)...		Potri.010G148700 [exp]	15.32	0.8193

Compare expression of checked genes

Potri.017G033000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.