Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G10320 1940 / 0 tRNA synthetase class I (I, L, M and V) family protein (.1) AT5G49030 274 / 4e-76 OVA2 ovule abortion 2, tRNA synthetase class I (I, L, M and V) family protein (.1), tRNA synthetase class I (I, L, M and V) family protein (.2), tRNA synthetase class I (I, L, M and V) family protein (.3) AT5G16715 127 / 3e-29 EMB2247 embryo defective 2247, ATP binding;valine-tRNA ligases;aminoacyl-tRNA ligases;nucleotide binding;ATP binding;aminoacyl-tRNA ligases (.1) AT1G14610 104 / 3e-22 VALRS, TWN2 VALYL TRNA SYNTHETASE, TWIN 2, valyl-tRNA synthetase / valine--tRNA ligase (VALRS) (.1) AT3G23145 82 / 1e-17 zinc ion binding;isoleucine-tRNA ligases;ATP binding;aminoacyl-tRNA ligases;nucleotide binding (.1) AT4G04350 69 / 2e-11 EMB2369 EMBRYO DEFECTIVE 2369, tRNA synthetase class I (I, L, M and V) family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G126501 [exp] 1329 / 0 AT4G10320 1167 / 0.0 tRNA synthetase class I (I, L, M and V) family protein (.1) Potri.010G014500 [exp] 269 / 1e-74 AT5G49030 1612 / 0.0 ovule abortion 2, tRNA synthetase class I (I, L, M and V) family protein (.1), tRNA synthetase class I (I, L, M and V) family protein (.2), tRNA synthetase class I (I, L, M and V) family protein (.3) Potri.017G124500 [exp] 130 / 1e-30 AT5G16715 1627 / 0.0 embryo defective 2247, ATP binding;valine-tRNA ligases;aminoacyl-tRNA ligases;nucleotide binding;ATP binding;aminoacyl-tRNA ligases (.1) Potri.007G004100 [exp] 106 / 7e-23 AT1G14610 1601 / 0.0 VALYL TRNA SYNTHETASE, TWIN 2, valyl-tRNA synthetase / valine--tRNA ligase (VALRS) (.1) Potri.005G087850 [exp] 104 / 2e-22 AT1G14610 1503 / 0.0 VALYL TRNA SYNTHETASE, TWIN 2, valyl-tRNA synthetase / valine--tRNA ligase (VALRS) (.1) Potri.004G090732 [exp] 94 / 7e-20 AT5G16715 590 / 0.0 embryo defective 2247, ATP binding;valine-tRNA ligases;aminoacyl-tRNA ligases;nucleotide binding;ATP binding;aminoacyl-tRNA ligases (.1) Potri.011G009600 [exp] 69 / 1e-11 AT4G04350 1443 / 0.0 EMBRYO DEFECTIVE 2369, tRNA synthetase class I (I, L, M and V) family protein (.1) Potri.004G226700 [exp] 45 / 0.0003 AT1G09620 1647 / 0.0 ATP binding;leucine-tRNA ligases;aminoacyl-tRNA ligases;nucleotide binding;ATP binding;aminoacyl-tRNA ligases (.1) Potri.003G003900 [exp] 44 / 0.0008 AT1G09620 1627 / 0.0 ATP binding;leucine-tRNA ligases;aminoacyl-tRNA ligases;nucleotide binding;ATP binding;aminoacyl-tRNA ligases (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024041 [exp] 1964 / 0 AT4G10320 1819 / 0.0 tRNA synthetase class I (I, L, M and V) family protein (.1) Lus10041706 [exp] 1960 / 0 AT4G10320 1820 / 0.0 tRNA synthetase class I (I, L, M and V) family protein (.1) Lus10025306 [exp] 249 / 5e-74 AT4G10320 249 / 1e-74 tRNA synthetase class I (I, L, M and V) family protein (.1) Lus10043413 [exp] 248 / 1e-67 AT5G49030 1570 / 0.0 ovule abortion 2, tRNA synthetase class I (I, L, M and V) family protein (.1), tRNA synthetase class I (I, L, M and V) family protein (.2), tRNA synthetase class I (I, L, M and V) family protein (.3) Lus10034171 [exp] 238 / 9e-65 AT5G49030 1530 / 0.0 ovule abortion 2, tRNA synthetase class I (I, L, M and V) family protein (.1), tRNA synthetase class I (I, L, M and V) family protein (.2), tRNA synthetase class I (I, L, M and V) family protein (.3) Lus10009139 [exp] 143 / 2e-34 AT5G16715 1128 / 0.0 embryo defective 2247, ATP binding;valine-tRNA ligases;aminoacyl-tRNA ligases;nucleotide binding;ATP binding;aminoacyl-tRNA ligases (.1) Lus10028505 [exp] 120 / 2e-27 AT5G16715 1520 / 0.0 embryo defective 2247, ATP binding;valine-tRNA ligases;aminoacyl-tRNA ligases;nucleotide binding;ATP binding;aminoacyl-tRNA ligases (.1) Lus10033331 [exp] 118 / 1e-26 AT1G14610 1580 / 0.0 VALYL TRNA SYNTHETASE, TWIN 2, valyl-tRNA synthetase / valine--tRNA ligase (VALRS) (.1) Lus10034788 [exp] 111 / 2e-24 AT1G14610 1508 / 0.0 VALYL TRNA SYNTHETASE, TWIN 2, valyl-tRNA synthetase / valine--tRNA ligase (VALRS) (.1) Lus10015552 [exp] 67 / 6e-11 AT4G04350 1412 / 0.0 EMBRYO DEFECTIVE 2369, tRNA synthetase class I (I, L, M and V) family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0039 [poplar] [flax] HUP PF00133 [poplar] [flax] tRNA-synt_1 tRNA synthetases class I (I, L, M and V) CL0258 [poplar] [flax] DALR PF08264 [poplar] [flax] Anticodon_1 Anticodon-binding domain of tRNA ligase
Representative CDS sequence Show only first row Show all	>Potri.017G033200.9 pacid=42813156 polypeptide=Potri.017G033200.9.p locus=Potri.017G033200 ID=Potri.017G033200.9.v4.1 annot-version=v4.1 ATGGAAGAAGTCTGTGAAGGAAAAGAATTCTCCTTTCCAACGCAAGAAGAAAAGATCCTCTCCTTCTGGTCAGAAATCAAGGCCTTTGAAACCCAATTAG AACGCACCAAAGACCTCCCTGAATACATCTTCTACGACGGTCCACCGTTCGCCACTGGGTTACCTCACTATGGACACATTTTAGCCGGTACAATCAAAGA TATTGTGACCAGATACCAGACGATGACAGGGCACCATGTGACACGTCGTTTTGGATGGGATTGCCATGGATTGCCCGTTGAAGCTGAGATTGATAAGAAA TTAGGGATTAAGAGAAGGGATGAGGTGTTGAAATTGGGGATTGATAAGTACAATGAAGAGTGTAGAGGGATTGTTACAAGGTACGTGGGGGAATGGGAGA AAGTTGTTGTTAGAGTTGGGAGATGGATTGATTTTAAGAATGATTATAAGACCATGGATTTGAAGTTTATGGAGAGTGTTTGGTGGGTTTTTTCCAAGTT GTTTGAGAAGGGGCTTGTTTACAAGGGTTTTAAGGTCATGCCTTACAGTACAGGTTGCAAAACTGTTCTGTCAAATTTTGAAGTTCAGCAGAATTATAAG GACGTACCTGATCCTGAGATAATGGTCACATTTCCAATTGTTGATGATCCACACAATGCAGCTTTCGTTGCTTGGACAACTACGCCATGGACTCTTCCCA GTAATCTTGCCCTTTGCGTTAATGGAAATTTTGACTATATCAAGGTTCGTAACAAGTACACTGGAAAAGTCTATGTAGTTGCTGAATGTAGGCTGTCAGC ACTTCCTGTTGAGAAACCAAAATCAACTGCAAATGGACCTGCTGGTGGTTCAAAGACATCAAATTCTAAAACTAAGAGTGGGAAGGCTGAAAACTTGATG GATTCTTATGATTTGTTGGAGAAAGTCAAGGGCAATGAGTTGGTGAATAAGAAGTATGAGCCGCTATTCAATTACTTCATGGAGTTCTCTGACACTGCAT TTAGAGTTGTTGCCGATGATTACGTGACTGATGACAGCGGTACTGGCATTGTTCACTGTGCTCCTGCATTTGGTGAAGAGGATTACCGTGTTTGCATTGG AAATCAAATACTCAGTAAGGAGAATTTGATTGTAGCTGTTGATGATGATGGCTGCTTCATTGAAAAAATTACTGATTTCGGTGGGCGCTATGTCAAGGAT GCAGACAAGGATATCATTGAAGCAGTGAAGGCAAAAGGCAGGCTTGTTAAGTCTGGGAGCTTTATGCATTCCTATCCCTTCTGTTGGAGATCTGATACAC CTCTCATTTATAGAGCTGTTCCAAGCTGGTTTATTAGAGTGGAAGAAATAAAAGAGCAACTGTTAGAAAGCAACAAACAAACATACTGGGTTCCTGATTA TGTAAAGGAGAAACGGTTTCACAACTGGCTTGAAAATGCTAGAGACTGGGCAGTTAGTAGAAGTCGATTTTGGGGCACTCCTCTACCTGTATGGATGAGT GATGATGGTGAAGAAGTAATAGTCATGGATTCTATTGCTAAACTTGAGAAGCTTTCTGGTGTTAAGGTGTTTGATCTGCATCGTCATAATATTGATCACA TCACAATCCCATCCAGTCGAGGTCCTGAATTTGGTGTGCTTCGACGTGTTGAGGATGTATTTGATTGTTGGTTTGAGAGTGGGTCGATGCCTTATGCTTA TATCCATTATCCATTTGAGAATGTTGAACTTTTTGAGAAAAATTTTCCTGGGCATTTTGTGGCTGAAGGGCTAGATCAAACTCGTGGATGGTTCTATACT CTCATGGTATTGTCTACTGCATTATTTGGGAAGCCTGCGTTTAGGAATCTCATTTGCAATGGACTTGTCCTGGCTGAGGATGGAAAGAAGATGAGTAAAA GTTTGAAAAATTATCCATCACCTATGGAAGTTATTAATGATTATGGAGCTGATGCATTACGATTATACCTGATAAACTCTCCAGTTGTGCGTGCAGAGAC CTTGCGTTTCAAAAAGGAAGGTGTTTTTAGTGTTGTCAAAGACGTGTTCCTCCCGTGGTACAATGCTTATCGGTTCCTTGTACAGAATGCAAAGAGGCTA GAGGTTGAAGGGCTTGCACCATTTACTCCTATTGACGCTGGAACTCTTCAAAATTCATCCAATGTGCTTGATCAGTGGATAAACTCAGCTACCCAGAGTC TTGTTCATTTTGTTCACCAAGAAATGAATGCATACCGCCTTTACACGGTGGTACCTTATCTCTTGAAGTTTCTTGACAACCTTACAAATATTTATGTGCG ATTCAACCGCAAAAGATTAAAAGGTCGTACTGGGGAAGAAGACTGCCGAACAGCTCTATCAACTTTATACAATGTGCTTTTAATATCATGTAAGGTGATG GCGCCATTCACACCTTTCTTTTCAGAAGGTCTGTATCAAAATATGCGGAGAGTTTGTACTGGATCAGAGGAAAGTATTCACTATTGCAGCTTTCCTCAAG TAGAGGGGGAGAGGAATGAACGGATTGAACAGAGTGTTGCAAGAATGATGACCATTATTGATCTTGCTCGCAATATCCGTGAACGGCACAACAAGCCTCT TAAATCGCCATTAAGGGAGATGATTGTAGTTCATCCTGATGTGGACTTTCTTGATGACATAGCTGGAAAATTGAAGGAGTATGTGCTCGAGGAACTCAAT GTGAGATCTCTTATTCCATGTAACGATACTCTGAAATATGCTTCTTTGCGTGCGGAGCCTGAGTTTAGCGTGTTAGGTAAGCGACTTGGAAAGTCTATGG GGGTTGTTGCCAAAGAAGTTAAAGCAATGTCTCAGATAGATATTTTGGAATTTGAGAAAGCTGGAGAAGTTACCATTGCTTCACATTGTCTGAAACTGTC TGATATTAAGGTTGTTCGGGAATTCAAATGCCCTGATGGTTTGACAGATAGGGAGGTTGATGCTGCTGGAGATGGTGATGTTTTGGTAATATTAGATTTG CGTCTGGATGAGTCATTATACGAGGCTGGTGTTGCTCGTGAGGTTGTGAATAGAATTCAGAAATTGAGGAAAAAAACTGGACTTGAACCTACAGATGCGG TTGAGGTTTACTTTGAATCTCTGGATGAAGATAAATCAATCTCCCAGCAGGTCTTGAATTCACAGGAACTCTATATTAGGGATGCAATTGGTTCCCCATT GCTTTCTTCTACATTTATGCCACCACATGCAGTTATACTTGGTGAGGAGAGTTTCCATGACATTTCCAAGCTGTCCTTCACCATATATTTGGCAAGGCCG GCACTAGTGTTCAAATCTGATGCCATTCTTTCATTGTATGGAGTGGTTTCAGGAAATACAAAATCTGTCCATGGTCTAGAAACTTACTTGCTATCAAGGG ATCATTCTAATTTGAAATCTGAATTTCAACTTGGAGATGGAAAGATAACTGTTGACACCGTTGAAGGCCTCCCTGCTGTAAATGTGGTATTGGGAGAACA TGTGTTTTTGACTGTTGGTGACTCCGTTTTAAGCACAAAAGGTGGACGATAA
AA sequence Show only first row Show all	>Potri.017G033200.9 pacid=42813156 polypeptide=Potri.017G033200.9.p locus=Potri.017G033200 ID=Potri.017G033200.9.v4.1 annot-version=v4.1 MEEVCEGKEFSFPTQEEKILSFWSEIKAFETQLERTKDLPEYIFYDGPPFATGLPHYGHILAGTIKDIVTRYQTMTGHHVTRRFGWDCHGLPVEAEIDKK LGIKRRDEVLKLGIDKYNEECRGIVTRYVGEWEKVVVRVGRWIDFKNDYKTMDLKFMESVWWVFSKLFEKGLVYKGFKVMPYSTGCKTVLSNFEVQQNYK DVPDPEIMVTFPIVDDPHNAAFVAWTTTPWTLPSNLALCVNGNFDYIKVRNKYTGKVYVVAECRLSALPVEKPKSTANGPAGGSKTSNSKTKSGKAENLM DSYDLLEKVKGNELVNKKYEPLFNYFMEFSDTAFRVVADDYVTDDSGTGIVHCAPAFGEEDYRVCIGNQILSKENLIVAVDDDGCFIEKITDFGGRYVKD ADKDIIEAVKAKGRLVKSGSFMHSYPFCWRSDTPLIYRAVPSWFIRVEEIKEQLLESNKQTYWVPDYVKEKRFHNWLENARDWAVSRSRFWGTPLPVWMS DDGEEVIVMDSIAKLEKLSGVKVFDLHRHNIDHITIPSSRGPEFGVLRRVEDVFDCWFESGSMPYAYIHYPFENVELFEKNFPGHFVAEGLDQTRGWFYT LMVLSTALFGKPAFRNLICNGLVLAEDGKKMSKSLKNYPSPMEVINDYGADALRLYLINSPVVRAETLRFKKEGVFSVVKDVFLPWYNAYRFLVQNAKRL EVEGLAPFTPIDAGTLQNSSNVLDQWINSATQSLVHFVHQEMNAYRLYTVVPYLLKFLDNLTNIYVRFNRKRLKGRTGEEDCRTALSTLYNVLLISCKVM APFTPFFSEGLYQNMRRVCTGSEESIHYCSFPQVEGERNERIEQSVARMMTIIDLARNIRERHNKPLKSPLREMIVVHPDVDFLDDIAGKLKEYVLEELN VRSLIPCNDTLKYASLRAEPEFSVLGKRLGKSMGVVAKEVKAMSQIDILEFEKAGEVTIASHCLKLSDIKVVREFKCPDGLTDREVDAAGDGDVLVILDL RLDESLYEAGVAREVVNRIQKLRKKTGLEPTDAVEVYFESLDEDKSISQQVLNSQELYIRDAIGSPLLSSTFMPPHAVILGEESFHDISKLSFTIYLARP ALVFKSDAILSLYGVVSGNTKSVHGLETYLLSRDHSNLKSEFQLGDGKITVDTVEGLPAVNVVLGEHVFLTVGDSVLSTKGGR

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G10320			tRNA synthetase class I (I, L,...		Potri.017G033200 [exp]	0	1
AT1G33410		NUP160, SAR1, A...	ARABIDOPSIS NUCLEOPORIN 160, S...		Potri.001G078600 [exp]	1.41	0.9070
AT5G58450			Tetratricopeptide repeat (TPR)...		Potri.013G152800 [exp]	2.82	0.7920
AT5G51200		EMB3142	EMBRYO DEFECTIVE 3142, Protein...		Potri.006G119600 [exp]	3.74	0.8443
AT3G06530			ARM repeat superfamily protein...		Potri.003G151500 [exp]	7.34	0.8231
AT1G14610		VALRS, TWN2	VALYL TRNA SYNTHETASE, TWIN 2,...		Potri.007G004100 [exp]	7.74	0.7731	Pt-VALRS.2
AT2G05120			Nucleoporin, Nup133/Nup155-lik...		Potri.002G221300 [exp]	10.39	0.7864
AT4G27010		EMB2788	EMBRYO DEFECTIVE 2788, unknown...		Potri.001G423600 [exp]	11.83	0.8079
AT2G01730		ATCPSF73-II, ED...	embryo sac development arrest ...		Potri.010G106200 [exp]	20.00	0.7444	ATCPSF73.1
AT1G06150	bHLH	bHLH089, EMB144...	EMBRYO DEFECTIVE 1444, basic h...		Potri.002G258766 [exp]	22.09	0.8248
AT1G80410		OMA, EMB2753	OMISHA, EMBRYO DEFECTIVE 2753,...		Potri.003G056700 [exp]	25.47	0.7371

Compare expression of checked genes

Potri.017G033200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.