Plant FIBer expression Database

Pt-BIO2.2 (Potri.017G033300) [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol Pt-BIO2.2
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT2G43360 606 / 0 BIOB, BIO2 BIOTIN AUXOTROPH B, BIOTIN AUXOTROPH 2, Radical SAM superfamily protein (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.007G126400
[exp]
644 / 0 AT2G43360 609 / 0.0 BIOTIN AUXOTROPH B, BIOTIN AUXOTROPH 2, Radical SAM superfamily protein (.1)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10027018
[exp]
598 / 0 AT2G43360 620 / 0.0 BIOTIN AUXOTROPH B, BIOTIN AUXOTROPH 2, Radical SAM superfamily protein (.1)
Lus10025559
[exp]
590 / 0 AT2G43360 624 / 0.0 BIOTIN AUXOTROPH B, BIOTIN AUXOTROPH 2, Radical SAM superfamily protein (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0036 TIM_barrel PF04055 Radical_SAM Radical SAM superfamily
CL0036 PF06968 BATS Biotin and Thiamin Synthesis associated domain
Representative CDS sequence
>Potri.017G033300.2 pacid=42813445 polypeptide=Potri.017G033300.2.p locus=Potri.017G033300 ID=Potri.017G033300.2.v4.1 annot-version=v4.1
ATGTTGTCCATTAGATCAATCTTTAGACCACACATAAGACTAAATTCTATCATTCTCTCCTCATTAAGTTATTCATCCTCTTCAGCTGCAGCCATTCAAG
CTGAAAAAACTATCAAAGATGGTCCAAGAAATGATTGGACACGTGAAGAAATCAAGGATGTTTATGACTCTCCTCTTCTTGATCTCCTCTTTCATGGGGC
TCAAGTTCATAGATATGCTCATAATTTTAGAGAGGTTCAGCAATGTACTTTGCTTTCCATAAAGACTGGTGGGTGCAGTGAGGATTGTTCTTATTGTCCT
CAATCTTCAAGGTATGATACTGGAGTCAAGGCTCAGAGGCTCATGACTAAAGAAACTGTTATGGAGGCTGCTAAAAGGGCAAAAGAGGCTGGTAGCACTC
GTTTTTGCATGGGTGCTGCTTGGAGAGACACAATAGGAAGGAAGACGAACTTTAACCAGATCTTAGATTATGTGAAAGACATCAGGGATATGGGCATGGA
GGTTTGCTGCACCTTGGGCATGCTAGAGAAGCAGCAGGCCGTAGAACTGAAGAAGGCGGGTCTTACAGCTTATAACCATAATCTTGATACCTCAAGAGAA
TATTACCCGAATATCATCACTACAAGATCTTATGATGAACGCCTGGAGACCCTTCAACATGTCCGTGAAGCAGGAATTAATGTCTGCTCAGGAGGCATAA
TAGGGCTTGGAGAAGCAGAGGAAGACCGAGTTGGTTTATTGCATACATTGGCAACCCTCCCTACTCACCCAGAGAGTGTTCCAATCAATGCATTAGTTTC
AGTGAAAGGCACACCTTTACAGGAACAAAAGCCAGTTGAAATATGGGAGATGATTCGAATGATTGGCACTGCACGTATAGTTATGCCGAAAGCAATGGTC
AGATTATCAGCTGGGAGAGTTCGTTTCTCCATGTCCGAGCAGGCTCTTTGCTTTCTTGCTGGTGCCAATTCTATCTTCACTGGCGAGAAGCTCCTGACAA
CACCTAACAACGATTATGATGCTGATCAACTTATGTTCAAGGTTCTCGGTTTGATTCCAAAAGCTCCCAGTTTCTCTGGAGAGGAAGAGAAGGCTTGCGA
AGCAGAACAATGTCAGGAAGCAGTTTCTAGTTCAGGTTGA
AA sequence
>Potri.017G033300.2 pacid=42813445 polypeptide=Potri.017G033300.2.p locus=Potri.017G033300 ID=Potri.017G033300.2.v4.1 annot-version=v4.1
MLSIRSIFRPHIRLNSIILSSLSYSSSSAAAIQAEKTIKDGPRNDWTREEIKDVYDSPLLDLLFHGAQVHRYAHNFREVQQCTLLSIKTGGCSEDCSYCP
QSSRYDTGVKAQRLMTKETVMEAAKRAKEAGSTRFCMGAAWRDTIGRKTNFNQILDYVKDIRDMGMEVCCTLGMLEKQQAVELKKAGLTAYNHNLDTSRE
YYPNIITTRSYDERLETLQHVREAGINVCSGGIIGLGEAEEDRVGLLHTLATLPTHPESVPINALVSVKGTPLQEQKPVEIWEMIRMIGTARIVMPKAMV
RLSAGRVRFSMSEQALCFLAGANSIFTGEKLLTTPNNDYDADQLMFKVLGLIPKAPSFSGEEEKACEAEQCQEAVSSSG

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT2G43360 BIOB, BIO2 BIOTIN AUXOTROPH B, BIOTIN AUX... Potri.017G033300
[exp]
0 1 Pt-BIO2.2
AT5G10460 Haloacid dehalogenase-like hyd... Potri.019G099100
[exp]
2.44 0.8320
AT4G24830 arginosuccinate synthase famil... Potri.008G020200
[exp]
5.29 0.8309
AT4G18570 Tetratricopeptide repeat (TPR)... Potri.004G054900
[exp]
6.00 0.8054
AT3G25860 PLE2, LTA2 PLASTID E2 SUBUNIT OF PYRUVATE... Potri.010G126600
[exp]
8.77 0.8201
AT2G26110 Protein of unknown function (D... Potri.018G053000
[exp]
9.48 0.8248
AT2G28105 unknown protein Potri.004G215300
[exp]
14.07 0.8446
AT1G57720 Translation elongation factor ... Potri.019G077000
[exp]
15.13 0.8480
AT5G03220 Mediator complex, subunit Med7... Potri.016G062800
[exp]
16.43 0.8177
AT5G54630 C2H2ZnF zinc finger protein-related (.... Potri.001G415600
[exp]
17.60 0.7556
AT3G08900 RGP3 reversibly glycosylated polype... Potri.010G156700
[exp]
21.21 0.8187 RGP3.2

Potri.017G033300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.