Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G43370 341 / 1e-116 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) AT3G50670 93 / 6e-21 U1SNRNP, U1-70K U1 small nuclear ribonucleoprotein-70K (.1.2) AT1G53720 61 / 7e-10 ATCYP59, CYP59 cyclophilin 59 (.1) AT1G74230 54 / 4e-08 GR-RBP5 glycine-rich RNA-binding protein 5 (.1) AT5G06210 51 / 9e-08 RNA binding (RRM/RBD/RNP motifs) family protein (.1) AT3G20930 51 / 6e-07 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) AT5G64200 50 / 1e-06 ATSC35, At-SC35 ARABIDOPSIS THALIANA ORTHOLOG OF HUMAN SPLICING FACTOR SC35, ortholog of human splicing factor SC35 (.1.2) AT1G73530 48 / 1e-06 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) AT3G26420 49 / 2e-06 ATRZ-1A RZ-1A, RNA-binding (RRM/RBD/RNP motifs) family protein with retrovirus zinc finger-like domain (.1) AT1G76460 48 / 4e-06 RNA-binding (RRM/RBD/RNP motifs) family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G026900 [exp] 96 / 7e-22 AT3G50670 322 / 6e-106 U1 small nuclear ribonucleoprotein-70K (.1.2) Potri.005G124300 [exp] 95 / 3e-21 AT3G50670 357 / 8e-120 U1 small nuclear ribonucleoprotein-70K (.1.2) Potri.005G097500 [exp] 59 / 2e-09 AT1G53720 667 / 0.0 cyclophilin 59 (.1) Potri.001G236300 [exp] 53 / 9e-09 AT4G13850 88 / 1e-23 glycine rich protein 2, glycine-rich RNA-binding protein 2 (.1.2.3.4) Potri.004G155300 [exp] 53 / 4e-08 AT2G21660 145 / 3e-45 GLYCINE-RICH RNA-BINDING PROTEIN 7, "cold, circadian rhythm, and rna binding 2", GLYCINE RICH PROTEIN 7, cold, circadian rhythm, and rna binding 2 (.1.2) Potri.008G022280 [exp] 52 / 4e-08 AT3G20930 203 / 2e-65 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Potri.009G116400 [exp] 52 / 9e-08 AT2G21660 145 / 5e-45 GLYCINE-RICH RNA-BINDING PROTEIN 7, "cold, circadian rhythm, and rna binding 2", GLYCINE RICH PROTEIN 7, cold, circadian rhythm, and rna binding 2 (.1.2) Potri.008G022200 [exp] 53 / 1e-07 AT3G20930 427 / 3e-149 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Potri.012G038200 [exp] 50 / 3e-07 AT1G73530 141 / 6e-43 RNA-binding (RRM/RBD/RNP motifs) family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025557 [exp] 355 / 5e-122 AT2G43370 345 / 1e-118 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Lus10027015 [exp] 354 / 8e-122 AT2G43370 347 / 3e-119 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Lus10014317 [exp] 92 / 2e-20 AT3G50670 466 / 2e-162 U1 small nuclear ribonucleoprotein-70K (.1.2) Lus10026026 [exp] 92 / 4e-20 AT3G50670 470 / 4e-164 U1 small nuclear ribonucleoprotein-70K (.1.2) Lus10031772 [exp] 65 / 3e-11 AT1G53720 639 / 0.0 cyclophilin 59 (.1) Lus10031194 [exp] 65 / 3e-11 AT1G53720 640 / 0.0 cyclophilin 59 (.1) Lus10026344 [exp] 51 / 1e-07 AT2G21660 140 / 3e-44 GLYCINE-RICH RNA-BINDING PROTEIN 7, "cold, circadian rhythm, and rna binding 2", GLYCINE RICH PROTEIN 7, cold, circadian rhythm, and rna binding 2 (.1.2) Lus10042320 [exp] 51 / 1e-07 AT2G21660 140 / 3e-44 GLYCINE-RICH RNA-BINDING PROTEIN 7, "cold, circadian rhythm, and rna binding 2", GLYCINE RICH PROTEIN 7, cold, circadian rhythm, and rna binding 2 (.1.2) Lus10023569 [exp] 50 / 2e-07 AT2G21660 147 / 8e-46 GLYCINE-RICH RNA-BINDING PROTEIN 7, "cold, circadian rhythm, and rna binding 2", GLYCINE RICH PROTEIN 7, cold, circadian rhythm, and rna binding 2 (.1.2) Lus10026343 [exp] 50 / 4e-07 AT4G39260 145 / 1e-45 glycine-rich RNA-binding protein 8, GLYCINE-RICH PROTEIN 8, cold, circadian rhythm, and RNA binding 1 (.1.2.3.4)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0221 [poplar] [flax] RRM PF00076 [poplar] [flax] RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Representative CDS sequence Show only first row Show all	>Potri.017G033400.1 pacid=42814103 polypeptide=Potri.017G033400.1.p locus=Potri.017G033400 ID=Potri.017G033400.1.v4.1 annot-version=v4.1 ATGAGTGGACGTAGCATAAACTCAGTGTTCTACGCAGATGCATACCACCCAATTCAAGCTGGTAGTATTGACGGCACCGACACTGCTCCTCACGATAACG CTGTTTACCGTGCGCTTCTCTGTTCCTCCGCCGGTCTCTATGACCCATTTGGAGATCCGAAGGCCATTGGTGACCCTTACTGCACTATCTTTGTTGGGCG TCTCTCACATCTCACCACAGAAGATACACTTAGAAAGGCAATGAGCAAGTATGGTAAAGTGAAGAACTTGAGATTGGTTAGACACATTGTGACTGGTGCA TCAAGAGGTTATGCTTTTGTTGAATTTGAAACTGAAAGGGAGATGCGCCGTGCATACAAGGATGGGCAGCATTCTTATATTGATGACTCTGAAATCATAG TTGACTATAATAGGCAACAATTGATGCCTGGGTGGATACCAAGAAGGTTAGGAGGTGGCCTTGGTGGTAGAAAGGAGTCTGGACAGCTTCGGTTTGGGGG CCGGGAAAGGCCATTTCGAGCTCCTCTTCAGACAATTCCTTATGATGATTTGAAGAGGCTTGGCATTCCTCCTCCACCAGAGGGAAGATATATGTCTCAC TATGAGGTCCCATCACCCCCTAGAAGAAAACGGAGCTCCAGAGATAAGGAAGAAAGTTCTCACAGGAGGAGCTCCATAGATAAGGAGGCTGAGGAATCCT CTAACATAAGGAGCTATAGGGACAAGGAAGAGCACTACGGTGAAAGGCACTCTGTTGAAAAAGAAGAACACCGCCACAAAGGCAGCTCCATGGATAGATC AGAGCGCTCTCACAGAAGAATCTCACCAGAGAGGGGTGGTTACCATCACAAAAGGAGCTCTTTAGACAGGGAAGAGCACTATGAGAAAAGGAGCCCTGTG GATATGGAAGAACCCTCCCACAAAAAGCTGAGAGACAGGGAGGAGCGCACTCACAAAAGGAGCTCCAGGGACAGGGAAGAAGGCTCTCGCAAGCGCCATA AACATGGGAGTTCTTCTGATAAAAGACGCAAGGAAGATGCCTAG
AA sequence Show only first row Show all	>Potri.017G033400.1 pacid=42814103 polypeptide=Potri.017G033400.1.p locus=Potri.017G033400 ID=Potri.017G033400.1.v4.1 annot-version=v4.1 MSGRSINSVFYADAYHPIQAGSIDGTDTAPHDNAVYRALLCSSAGLYDPFGDPKAIGDPYCTIFVGRLSHLTTEDTLRKAMSKYGKVKNLRLVRHIVTGA SRGYAFVEFETEREMRRAYKDGQHSYIDDSEIIVDYNRQQLMPGWIPRRLGGGLGGRKESGQLRFGGRERPFRAPLQTIPYDDLKRLGIPPPPEGRYMSH YEVPSPPRRKRSSRDKEESSHRRSSIDKEAEESSNIRSYRDKEEHYGERHSVEKEEHRHKGSSMDRSERSHRRISPERGGYHHKRSSLDREEHYEKRSPV DMEEPSHKKLRDREERTHKRSSRDREEGSRKRHKHGSSSDKRRKEDA

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G43370			RNA-binding (RRM/RBD/RNP motif...		Potri.017G033400 [exp]	0	1
AT2G38610			RNA-binding KH domain-containi...		Potri.006G111400 [exp]	5.19	0.5833
AT1G27520			Glycosyl hydrolase family 47 p...		Potri.012G076600 [exp]	8.00	0.6693
AT3G60500		G3, CER7	ECERIFERUM 7, 3'-5'-exoribonuc...		Potri.001G253200 [exp]	22.62	0.6542
AT3G06150			unknown protein		Potri.008G202500 [exp]	24.37	0.5282
AT3G21215			RNA-binding (RRM/RBD/RNP motif...		Potri.008G009400 [exp]	29.49	0.6290
AT3G62240	C2H2ZnF		RING/U-box superfamily protein...		Potri.013G004200 [exp]	31.84	0.5930
AT5G44280		ATRING1A	ARABIDOPSIS THALIANA RING 1A, ...		Potri.017G013000 [exp]	36.00	0.5571
AT1G80810			Tudor/PWWP/MBT superfamily pro...		Potri.003G181300 [exp]	43.24	0.5751
AT4G28760			Protein of unknown function (D...		Potri.014G194600 [exp]	44.09	0.5871
					Potri.006G276250 [exp]	49.65	0.5536

Compare expression of checked genes

Potri.017G033400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.