Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G63380 597 / 0 AMP-dependent synthetase and ligase family protein (.1) AT1G20510 482 / 1e-165 OPCL1 OPC-8:0 CoA ligase1 (.1.2) AT1G20500 475 / 6e-163 AMP-dependent synthetase and ligase family protein (.1) AT5G38120 459 / 1e-156 4CL8 AMP-dependent synthetase and ligase family protein (.1) AT1G20480 456 / 3e-155 AMP-dependent synthetase and ligase family protein (.1) AT4G05160 431 / 8e-146 AMP-dependent synthetase and ligase family protein (.1) AT4G19010 416 / 8e-140 AMP-dependent synthetase and ligase family protein (.1) AT3G21240 351 / 2e-114 AT4CL2, 4CL2 4-coumarate:CoA ligase 2 (.1) AT1G51680 323 / 8e-104 AT4CL1, 4CL.1, 4CL1 ARABIDOPSIS THALIANA 4-COUMARATE:COA LIGASE 1, 4-coumarate:CoA ligase 1 (.1.2.3) AT1G65060 320 / 1e-102 4CL3 4-coumarate:CoA ligase 3 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G094800 [exp] 608 / 0 AT5G63380 657 / 0.0 AMP-dependent synthetase and ligase family protein (.1) Potri.015G092300 [exp] 592 / 0 AT5G63380 594 / 0.0 AMP-dependent synthetase and ligase family protein (.1) Potri.010G057000 [exp] 583 / 0 AT5G63380 530 / 0.0 AMP-dependent synthetase and ligase family protein (.1) Potri.012G095000 [exp] 570 / 0 AT5G63380 615 / 0.0 AMP-dependent synthetase and ligase family protein (.1) Potri.012G094900 [exp] 561 / 0 AT5G63380 604 / 0.0 AMP-dependent synthetase and ligase family protein (.1) Potri.005G248500 [exp] 459 / 1e-156 AT1G20510 795 / 0.0 OPC-8:0 CoA ligase1 (.1.2) Potri.002G012800 [exp] 456 / 1e-155 AT1G20510 769 / 0.0 OPC-8:0 CoA ligase1 (.1.2) Potri.010G230200 [exp] 439 / 2e-148 AT1G20510 478 / 7e-164 OPC-8:0 CoA ligase1 (.1.2) Potri.008G031500 [exp] 436 / 1e-147 AT1G20510 466 / 3e-159 OPC-8:0 CoA ligase1 (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002791 [exp] 584 / 0 AT5G63380 688 / 0.0 AMP-dependent synthetase and ligase family protein (.1) Lus10036994 [exp] 561 / 0 AT5G63380 516 / 4e-179 AMP-dependent synthetase and ligase family protein (.1) Lus10012280 [exp] 471 / 3e-158 AT1G20510 825 / 0.0 OPC-8:0 CoA ligase1 (.1.2) Lus10015998 [exp] 461 / 3e-157 AT1G20510 833 / 0.0 OPC-8:0 CoA ligase1 (.1.2) Lus10015999 [exp] 450 / 1e-152 AT1G20510 692 / 0.0 OPC-8:0 CoA ligase1 (.1.2) Lus10021431 [exp] 413 / 9e-139 AT4G05160 803 / 0.0 AMP-dependent synthetase and ligase family protein (.1) Lus10016135 [exp] 406 / 5e-136 AT4G05160 791 / 0.0 AMP-dependent synthetase and ligase family protein (.1) Lus10013831 [exp] 403 / 6e-135 AT4G05160 654 / 0.0 AMP-dependent synthetase and ligase family protein (.1) Lus10037934 [exp] 400 / 4e-133 AT1G20510 462 / 2e-157 OPC-8:0 CoA ligase1 (.1.2) Lus10038667 [exp] 399 / 9e-133 AT1G20510 449 / 1e-152 OPC-8:0 CoA ligase1 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0378 [poplar] [flax] ANL PF00501 [poplar] [flax] AMP-binding AMP-binding enzyme CL0531 [poplar] [flax] AMP-binding_C PF13193 [poplar] [flax] AMP-binding_C AMP-binding enzyme C-terminal domain
Representative CDS sequence Show only first row Show all	>Potri.017G033600.2 pacid=42814071 polypeptide=Potri.017G033600.2.p locus=Potri.017G033600 ID=Potri.017G033600.2.v4.1 annot-version=v4.1 ATGGACCAACAAGCCAACTCTCCAATCAACCCAAAGAGTGGCTTCAACTCCTCAGCAAAGACTTTCCATAGCCTAAGACCTCCTATCCATCTCCCTCCCG AGGAAACTCCTTTCTCAGCAGCTGACTATGCTCTCTCACTCCATGCCAACCACTCTCCCTGGCCTGATTCATTAGCCATAATCAACTCATCCACAAGCCA AAAGCTTTCTTACTCGGACTTCATTGAAAGAATCAAATCCTTAACCTTGTATCTCCAAAATGTCACTCAACTTCGCAAAAATGACACTGCCTTTATTCTC TGTCCAAACTCCATTCAAGTCCCCATTCTCTACTTCTCTCTTCTTTCACTTGGTGTAGTTATCTCCCCTGCAAATCCCATAAGCACTGAATCAGAAATCT CACACCAGATCAGTCTCTCTAACCCGGTAATCGCCTTTGCTATATCAAAAACATGTCACAAGCTTCCAAAGCTGAAACACGGAACCATTCTCATCGACTC ACCTGAGTTTGACTCAATAATTACCATGTCTCCTGCAACAACAACAGCTCGGCAAGACCTCGAAAAGGTTACAGTGAATCAATCGGATTTGGCAGCTATC ATGTTCTCCTCAGGCACGACAGGGAAAGTCAAAGGAGTGTTGTTGACTCACAGGAACCTCATGGCTGTAATTGCAGGGTACTATCCATTTAAACAAGAGA GGAAATCCCCTACGGTCCTGCTTTACACGGTGCCATATTTTCACGTGTTTGGATTCTTCTACAGTTTTAAATCAATAGCATTAAGTGAAACAGTGGTGGT GATGGAGAGGTTTGATTTGAAGAAGATGTTGAGAGCGGTGGAGAAGTTTAGGGTGACACACCTGGCGGTGGCGCCACCAGTGGTTGTAGCGATGACAAAG AGTGATTTGACGGACGGTTATGATTTGAGGTCGCTGGAGACTGTGGGGTGTGGTGGTGCTCCGCTTGGGAAGGATGTTATGAAGGTGTTCGCAGACAGGT TTCCTACCGTGGACCTGTGGCAGGGTTATGGGCTAACTGAATCAACGGGGGTCCTGTCCCGATCAAATAGTCCGGAAGAAAGTCGCCATTGGGGTTCAGT TGGAAGGCTTACCGCAGGTTGTGAAGCAAAAATTGTTGATGCTGATACCGGTGACGCCTTGCCTCCGGGGAAGCAAGGAGAGCTTTGGGTTAGAGGATCC ACAATAATGAAAGGTTATGTTGGAGATCCTGAAGCAACTTCTACTACCTTGGATCCAGATGGCTGGTTGAGGACTGGTGATCTTTGTTATATAGACGAGG AAGGTTTTTTATTCGTTGTTGACAGACTGAAGGAACTGATCAAATACAAGGGATACCAGGTTGCTCCAGCTGAACTAGAGCAACTGCTCCACTCCCATCC AGAGATAGCTGATGCTGCAGTAATACCAAATTTCAGATACCCTGACGAGGAAGCTGGTCAGGTGCCGATGGCTTTTGTGGTGAAACAGCCTCAGAGTAGA ATCAATGAAAGGGGGGTAATGGATTTTGTTGCAAAACAGGTTGCACCATACAAGAAAGTAAGGCGAGTAGAGTTTGTCAGTGCTATACCCAAGAGTCCAG CAGGAAAAATTTTGAGGAAGGAACTGAGAAAGATGATGGTTCCGATTCCGTTCCCTTCATCGAAAATGTAA
AA sequence Show only first row Show all	>Potri.017G033600.2 pacid=42814071 polypeptide=Potri.017G033600.2.p locus=Potri.017G033600 ID=Potri.017G033600.2.v4.1 annot-version=v4.1 MDQQANSPINPKSGFNSSAKTFHSLRPPIHLPPEETPFSAADYALSLHANHSPWPDSLAIINSSTSQKLSYSDFIERIKSLTLYLQNVTQLRKNDTAFIL CPNSIQVPILYFSLLSLGVVISPANPISTESEISHQISLSNPVIAFAISKTCHKLPKLKHGTILIDSPEFDSIITMSPATTTARQDLEKVTVNQSDLAAI MFSSGTTGKVKGVLLTHRNLMAVIAGYYPFKQERKSPTVLLYTVPYFHVFGFFYSFKSIALSETVVVMERFDLKKMLRAVEKFRVTHLAVAPPVVVAMTK SDLTDGYDLRSLETVGCGGAPLGKDVMKVFADRFPTVDLWQGYGLTESTGVLSRSNSPEESRHWGSVGRLTAGCEAKIVDADTGDALPPGKQGELWVRGS TIMKGYVGDPEATSTTLDPDGWLRTGDLCYIDEEGFLFVVDRLKELIKYKGYQVAPAELEQLLHSHPEIADAAVIPNFRYPDEEAGQVPMAFVVKQPQSR INERGVMDFVAKQVAPYKKVRRVEFVSAIPKSPAGKILRKELRKMMVPIPFPSSKM

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G63380			AMP-dependent synthetase and l...		Potri.017G033600 [exp]	0	1
AT3G61220		SDR1	short-chain dehydrogenase/redu...		Potri.004G235500 [exp]	2.00	0.8167
AT1G19715			Mannose-binding lectin superfa...		Potri.005G232500 [exp]	3.87	0.8141
AT5G24910		ELA1, CYP714A1	EUI-like p450 A1, cytochrome P...		Potri.010G116300 [exp]	4.12	0.7105
AT2G28680			RmlC-like cupins superfamily p...		Potri.007G047200 [exp]	4.89	0.7675
AT4G24340			Phosphorylase superfamily prot...		Potri.013G100800 [exp]	5.29	0.8034
AT4G24340			Phosphorylase superfamily prot...		Potri.013G100700 [exp]	6.32	0.8000
AT1G30840		ATPUP4	purine permease 4 (.1.2)		Potri.003G156900 [exp]	6.48	0.7838
AT1G54200			unknown protein		Potri.001G170500 [exp]	7.41	0.7413
AT3G62930			Thioredoxin superfamily protei...		Potri.002G209000 [exp]	12.96	0.7349
AT1G24625	C2H2ZnF	ZFP7	zinc finger protein 7 (.1)		Potri.009G093300 [exp]	14.14	0.7488

Compare expression of checked genes

Potri.017G033600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.