Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G38280 337 / 4e-111 PR5K PR5-like receptor kinase (.1) AT5G38260 336 / 5e-111 Protein kinase superfamily protein (.1) AT1G70250 334 / 2e-108 receptor serine/threonine kinase, putative (.1) AT1G66910 329 / 4e-108 Protein kinase superfamily protein (.1) AT1G66980 335 / 1e-106 GDPDL2, SNC4 Glycerophosphodiester phosphodiesterase \(GDPD\) like 2, suppressor of npr1-1 constitutive 4 (.1) AT4G18250 330 / 2e-106 receptor serine/threonine kinase, putative (.1) AT5G39030 327 / 1e-105 Protein kinase superfamily protein (.1) AT5G39020 323 / 3e-104 Malectin/receptor-like protein kinase family protein (.1) AT1G66920 316 / 2e-103 Protein kinase superfamily protein (.1.2) AT5G38240 312 / 3e-102 Protein kinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G125800 [exp] 526 / 0 AT5G38260 308 / 1e-95 Protein kinase superfamily protein (.1) Potri.007G125000 [exp] 525 / 0 AT5G38260 318 / 7e-100 Protein kinase superfamily protein (.1) Potri.007G125450 [exp] 519 / 0 AT5G38260 300 / 2e-92 Protein kinase superfamily protein (.1) Potri.007G125200 [exp] 518 / 0 AT5G38260 300 / 2e-94 Protein kinase superfamily protein (.1) Potri.007G126100 [exp] 494 / 2e-172 AT1G70250 290 / 3e-87 receptor serine/threonine kinase, putative (.1) Potri.015G122000 [exp] 482 / 5e-172 AT5G38280 336 / 2e-110 PR5-like receptor kinase (.1) Potri.017G009100 [exp] 493 / 1e-171 AT5G38280 331 / 1e-103 PR5-like receptor kinase (.1) Potri.017G009400 [exp] 488 / 9e-170 AT5G38280 329 / 4e-103 PR5-like receptor kinase (.1) Potri.017G009000 [exp] 471 / 3e-168 AT5G38280 306 / 3e-99 PR5-like receptor kinase (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025545 [exp] 444 / 1e-157 AT5G39020 316 / 1e-101 Malectin/receptor-like protein kinase family protein (.1) Lus10022359 [exp] 448 / 2e-155 AT1G66980 322 / 3e-101 Glycerophosphodiester phosphodiesterase \(GDPD\) like 2, suppressor of npr1-1 constitutive 4 (.1) Lus10025492 [exp] 448 / 2e-154 AT5G38260 326 / 1e-102 Protein kinase superfamily protein (.1) Lus10008335 [exp] 447 / 3e-153 AT1G70250 316 / 8e-98 receptor serine/threonine kinase, putative (.1) Lus10014924 [exp] 435 / 2e-149 AT1G67000 349 / 5e-112 Protein kinase superfamily protein (.1) Lus10027085 [exp] 369 / 1e-128 AT1G66980 275 / 1e-84 Glycerophosphodiester phosphodiesterase \(GDPD\) like 2, suppressor of npr1-1 constitutive 4 (.1) Lus10025553 [exp] 348 / 2e-115 AT1G70250 341 / 4e-108 receptor serine/threonine kinase, putative (.1) Lus10008362 [exp] 340 / 1e-113 AT1G66930 250 / 7e-75 Protein kinase superfamily protein (.1) Lus10025547 [exp] 335 / 2e-111 AT1G66920 345 / 2e-111 Protein kinase superfamily protein (.1.2) Lus10026761 [exp] 334 / 2e-111 AT1G67000 334 / 4e-107 Protein kinase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF07714 [poplar] [flax] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase
Representative CDS sequence Show only first row Show all	>Potri.017G034500.1 pacid=42813941 polypeptide=Potri.017G034500.1.p locus=Potri.017G034500 ID=Potri.017G034500.1.v4.1 annot-version=v4.1 ATGCCAGTAAGATATTCCTATTCAGATATCAAGAAGATTACTAGAGGTTTCAAGGACGAATTGGGTAAAGGAGGCTTTGGTACAGTTTACAAAGGAAAGC TTCGCAGTGGACGTTTTGCAGCAATAAAATTGTTGGGAAAATCAAAAGCTAATGGACAGGATTTCATAAATGAAGTTGCTACCATAGGAAGGATTCACCA TACTAATGTGGTGCAGCTAATTGGTTTTTGCGCCGAAGGATCAAAACGTGCTCTTGTATATGATTTCATGCCTAATGGATCTCTTGATAGTCACTTGTTT TCTCAAGAAGGATCAATCTCTTTAAGCTGGCAAAAACTGCATCAGATTTCCCTTGGTGTGGCTTGTGGTATCGACTATCTCCATTTAGGTTGTGACATGC AAATACTGCATTTTGATATCAAGCCTCACAACATTCTCCTCGACGAAAATTTCACTCCAAAAGTCTCTGACTTCGGGCTCGCTAGGTTGTACCCAACGAA TGGCAGCATCACATCTCTCACTGCAGCAAGGGGCACCATCGGATACATGGCTCCTGAATTGTTCTACAAAAACATTGGACGCGTCTCATATAAAGCTGAT GTCTATAGCTTCGGAATGCTGCTATTGGAAATGGCAGGCAAAAGAAAGAATCTAAATGCTTTGGCAGAAAATTCAAGTCAAATCTACTGGCCATATTGGG TTCATGACCAAGTATCTGATGGAAAGGCCATAGAAATCGGAGACGATGCCACTGAGGAAGAAAGTAAGATCGTTAAGAAGATGATTATGGTTGGATTGTG GTGTATACAAATGAAACCCATGGATCGGCCTACAATGAAGAATGTTGTGGAGATGCTTGAAGGAGATTTGGAAAACTTGCGATTGCCTCCTAAGCCTGTC TTCAATGTAGATGAGACGCCAACAAACATTGAAGGAGAGTCATCATCGTTGTCAGGTGATTCTACCGAATCAACCAGTTTGGTTGAAAATGCATACTGA
AA sequence Show only first row Show all	>Potri.017G034500.1 pacid=42813941 polypeptide=Potri.017G034500.1.p locus=Potri.017G034500 ID=Potri.017G034500.1.v4.1 annot-version=v4.1 MPVRYSYSDIKKITRGFKDELGKGGFGTVYKGKLRSGRFAAIKLLGKSKANGQDFINEVATIGRIHHTNVVQLIGFCAEGSKRALVYDFMPNGSLDSHLF SQEGSISLSWQKLHQISLGVACGIDYLHLGCDMQILHFDIKPHNILLDENFTPKVSDFGLARLYPTNGSITSLTAARGTIGYMAPELFYKNIGRVSYKAD VYSFGMLLLEMAGKRKNLNALAENSSQIYWPYWVHDQVSDGKAIEIGDDATEEESKIVKKMIMVGLWCIQMKPMDRPTMKNVVEMLEGDLENLRLPPKPV FNVDETPTNIEGESSSLSGDSTESTSLVENAY

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G38260			Protein kinase superfamily pro...		Potri.017G034500 [exp]	0	1
AT4G23200		CRK12	cysteine-rich RLK (RECEPTOR-li...		Potri.018G111700 [exp]	3.46	0.9619
AT1G05680		UGT74E2	Uridine diphosphate glycosyltr...		Potri.017G032500 [exp]	5.47	0.9537	ZOG1.12
AT3G51550		FER	FERONIA, Malectin/receptor-lik...		Potri.017G096600 [exp]	6.32	0.9481
AT1G66920			Protein kinase superfamily pro...		Potri.017G117065 [exp]	7.41	0.9447
AT5G23670		ATLCB2, LCB2	long chain base2 (.1.2)		Potri.015G103800 [exp]	10.24	0.9437	LJLCB2.1
AT4G33090		ATAPM1, APM1	aminopeptidase M1 (.1)		Potri.017G039200 [exp]	14.49	0.9418
AT4G37000		ATRCCR, ACD2	ARABIDOPSIS THALIANA RED CHLOR...		Potri.007G043700 [exp]	15.29	0.9445
AT1G05680		UGT74E2	Uridine diphosphate glycosyltr...		Potri.017G032700 [exp]	15.55	0.9387
AT1G79600			Protein kinase superfamily pro...		Potri.002G000100 [exp]	17.23	0.9429
AT3G57680			Peptidase S41 family protein (...		Potri.006G055400 [exp]	17.29	0.9369

Compare expression of checked genes

Potri.017G034500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.