Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G31600 238 / 1e-77 unknown protein AT1G05860 214 / 1e-68 unknown protein AT3G53860 209 / 1e-66 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G126300 [exp] 398 / 4e-141 AT2G31600 244 / 2e-80 unknown protein Potri.010G180200 [exp] 223 / 2e-72 AT1G05860 180 / 1e-55 unknown protein
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026896 [exp] 254 / 3e-84 AT2G31600 241 / 5e-79 unknown protein Lus10025558 [exp] 245 / 2e-80 AT2G31600 239 / 7e-78 unknown protein Lus10027016 [exp] 165 / 2e-51 AT2G31600 131 / 2e-38 unknown protein Lus10003417 [exp] 140 / 6e-40 AT2G31600 157 / 2e-47 unknown protein
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF13891 [poplar] [flax] zf-C3Hc3H Potential DNA-binding domain
Representative CDS sequence Show only first row Show all	>Potri.017G035200.1 pacid=42813333 polypeptide=Potri.017G035200.1.p locus=Potri.017G035200 ID=Potri.017G035200.1.v4.1 annot-version=v4.1 ATGACCGCAGCCACCAAGAAACACCTACCCTCCTCCTCTAAGCCACCCAAGAACCACCACTCTAACCCCAACACCACCACCACAACAACCCCACAACCTA ACATCACTCAAAACCCTAACCCAACCACTAATCCATCACCACTATCTCCCACCCTCAAAGACCAGGTTTTGTCACGCGCCACCCACATCACGCGCCAAGA ACTCCTCAAAAGAAGGTCTTACAAGCTAAAACAACTCTCAAAATGCTTCAAAGATCATTACTGGGCATTAATGGAAGAACTCAAGATTCAGTACAGAGAG TACTATTGGGAATATGGTGTCAGCCCTTTTAAAGAAGACCATCAAAACACCCTTCAAAAACAAGAACAGCAGAAACAGGGTGGTGGGATTGGCGTTCTAG AGAGGGAGAATGAAGAGAGTGGGGCTAATATTGAAGTTATTGGTGAAAATAACACTAATGTTAGTGATTTGAAGAGTAATCATAGGTGTTTGTTTGTTGG GTGTAAGTTAAAGGCTATGGCTTTGACAAGTTTTTGTCATCTTCATATACTTTCTGATGCAAAGCAGAAGCTTTACAAGCCTTGTGGTTATGTTATCAAA AGTGCTCAGGCTGGACCAATAACATGTGGAAAGCCAATACTGAGATCAACTGCTCCTTCTCTCTGCACCATCCATGTCCAAAAGGCCCAGAAACATGTGA CTCAGGCTCTGAGGAAAGCAGGTCTTAATGTTTCTTCATCGAGTAAGCTTGCTCCTAAATTTCATGTCATTGTGACAGAATATGTGCGTCAAATTCAATT CAAAAGAAAGGCTGCAGAAAGGGGAAATCGGAGTAAAGTCATGGACAAGGAAGTGACTGCTAGCTGA
AA sequence Show only first row Show all	>Potri.017G035200.1 pacid=42813333 polypeptide=Potri.017G035200.1.p locus=Potri.017G035200 ID=Potri.017G035200.1.v4.1 annot-version=v4.1 MTAATKKHLPSSSKPPKNHHSNPNTTTTTTPQPNITQNPNPTTNPSPLSPTLKDQVLSRATHITRQELLKRRSYKLKQLSKCFKDHYWALMEELKIQYRE YYWEYGVSPFKEDHQNTLQKQEQQKQGGGIGVLERENEESGANIEVIGENNTNVSDLKSNHRCLFVGCKLKAMALTSFCHLHILSDAKQKLYKPCGYVIK SAQAGPITCGKPILRSTAPSLCTIHVQKAQKHVTQALRKAGLNVSSSSKLAPKFHVIVTEYVRQIQFKRKAAERGNRSKVMDKEVTAS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G31600			unknown protein		Potri.017G035200 [exp]	0	1
AT3G07740		HXA2, HXA02, HA...	homolog of yeast ADA2 2A (.1.2...		Potri.014G166300 [exp]	1.41	0.9196
AT4G12560		CPR1, CPR30	CONSTITUTIVE EXPRESSER OF PR G...		Potri.013G104100 [exp]	2.82	0.8893
AT5G41580			RING/U-box superfamily protein...		Potri.003G133000 [exp]	3.46	0.9106
AT3G50910			unknown protein		Potri.005G120600 [exp]	4.47	0.9049
AT3G18650	MADS	AGL103	AGAMOUS-like 103 (.1)		Potri.010G181300 [exp]	6.00	0.8817
AT5G40400			Pentatricopeptide repeat (PPR)...		Potri.017G071600 [exp]	6.00	0.8965
AT2G43250			unknown protein		Potri.007G124700 [exp]	7.00	0.8927
AT3G62470			Pentatricopeptide repeat (PPR)...		Potri.014G121400 [exp]	7.07	0.9044
AT1G71800		CSTF64	cleavage stimulating factor 64...		Potri.002G061200 [exp]	7.74	0.8783
AT5G63280	C2H2ZnF		C2H2-like zinc finger protein ...		Potri.015G090300 [exp]	8.36	0.8601

Compare expression of checked genes

Potri.017G035200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.