Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G66920 335 / 2e-107 Protein kinase superfamily protein (.1.2) AT5G38280 336 / 5e-107 PR5K PR5-like receptor kinase (.1) AT1G70250 334 / 9e-105 receptor serine/threonine kinase, putative (.1) AT1G66910 330 / 9e-105 Protein kinase superfamily protein (.1) AT4G18250 334 / 3e-104 receptor serine/threonine kinase, putative (.1) AT1G66980 338 / 1e-103 GDPDL2, SNC4 Glycerophosphodiester phosphodiesterase \(GDPD\) like 2, suppressor of npr1-1 constitutive 4 (.1) AT5G39020 330 / 6e-103 Malectin/receptor-like protein kinase family protein (.1) AT5G38260 322 / 5e-102 Protein kinase superfamily protein (.1) AT1G67000 326 / 8e-101 Protein kinase superfamily protein (.1) AT1G66930 315 / 8e-99 Protein kinase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G125600 [exp] 787 / 0 AT5G38260 357 / 3e-115 Protein kinase superfamily protein (.1) Potri.007G126200 [exp] 700 / 0 AT1G66920 333 / 3e-107 Protein kinase superfamily protein (.1.2) Potri.012G003500 [exp] 677 / 0 AT1G66920 358 / 4e-116 Protein kinase superfamily protein (.1.2) Potri.015G018200 [exp] 676 / 0 AT1G66920 368 / 1e-119 Protein kinase superfamily protein (.1.2) Potri.012G002800 [exp] 673 / 0 AT1G66920 346 / 2e-111 Protein kinase superfamily protein (.1.2) Potri.015G018000 [exp] 673 / 0 AT1G66920 355 / 2e-114 Protein kinase superfamily protein (.1.2) Potri.012G003000 [exp] 669 / 0 AT1G66920 356 / 5e-115 Protein kinase superfamily protein (.1.2) Potri.007G125100 [exp] 640 / 0 AT1G66920 347 / 2e-113 Protein kinase superfamily protein (.1.2) Potri.012G003400 [exp] 471 / 1e-161 AT1G66920 238 / 2e-71 Protein kinase superfamily protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025553 [exp] 613 / 0 AT1G70250 341 / 4e-108 receptor serine/threonine kinase, putative (.1) Lus10014923 [exp] 603 / 0 AT1G67000 335 / 2e-107 Protein kinase superfamily protein (.1) Lus10025547 [exp] 560 / 0 AT1G66920 345 / 2e-111 Protein kinase superfamily protein (.1.2) Lus10026761 [exp] 518 / 2e-179 AT1G67000 334 / 4e-107 Protein kinase superfamily protein (.1) Lus10014924 [exp] 357 / 3e-115 AT1G67000 349 / 5e-112 Protein kinase superfamily protein (.1) Lus10022359 [exp] 328 / 8e-105 AT1G66980 322 / 3e-101 Glycerophosphodiester phosphodiesterase \(GDPD\) like 2, suppressor of npr1-1 constitutive 4 (.1) Lus10025545 [exp] 317 / 1e-103 AT5G39020 316 / 1e-101 Malectin/receptor-like protein kinase family protein (.1) Lus10008335 [exp] 325 / 6e-102 AT1G70250 316 / 8e-98 receptor serine/threonine kinase, putative (.1) Lus10025492 [exp] 318 / 4e-100 AT5G38260 326 / 1e-102 Protein kinase superfamily protein (.1) Lus10027085 [exp] 269 / 1e-85 AT1G66980 275 / 1e-84 Glycerophosphodiester phosphodiesterase \(GDPD\) like 2, suppressor of npr1-1 constitutive 4 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF00069 [poplar] [flax] Pkinase Protein kinase domain
Representative CDS sequence Show only first row Show all	>Potri.017G035500.1 pacid=42813047 polypeptide=Potri.017G035500.1.p locus=Potri.017G035500 ID=Potri.017G035500.1.v4.1 annot-version=v4.1 ATGATGAACTATTCATCAGAAATGGTTACCTGTTTGTTCTACTTTTTCATTGTCTTCCTTGCAGGCCATGGAGCAAGCTTGAATAACACAGGATCATGTG GAAACCGTGGCCCTGACATCCGATTTCCTTTCCGAAACATGGACAAACAACCAGACCACTGTGGTTGTCCTGGGTTTGATCTATCCTGCTCAGATGACAA CAGCACAGTGCTTAAGCTGCCAACTGGATTGAGTTTCCTCATCGAAAGAATTGACTATAGACATCAACTTATTTATGCAAGGGATCCTCAAGGTTGCTTT CCAGGGCAACGTTTAAACTTCAGTTTAGGGGCTTCTCACTTCCAAATTAAGAACGATTGGCTGTATGATTGGACCTTGTTCAATTGTTCACTTTCTAGTG AGAAAAGGTCTGGGTTCATGTATAAAATCCCATGTCTGAGTACTTTTAACCATGAAGTTTATGCCTTTGACTCAAGTACCACCATCAGTGACTCTGATTT GTTATCTTGTACCAAGATGTACAACATTTATGGAATTTCATATAGTATGATACCGGAAGAAAATGATGTTCTTACTATGTCTTGGTCCAATCCAACTTGT GAATCTTCTGAAACTGAATGCTACCTTCAGCACACTAAAGATGTGCGGCCAAAGCTACTGATTACTGGTGTGATTTTAGGATTCTTCCTTTTTGCAATAG TGATTATTGCACTCTACCGCGCCTATAGCAACGATAAAACACAAAGAGAATATCAAGCCAGGGTTGAAATGTTTTTGGATGATTACAGATCACTGAATCC CACTAGGTACTCCTACGCTGATCTCAAGAGGATCACAAATCAATTCGGTGATGAATTGGGCCAAGGAGCTTATGGAACCGTGTTCAAAGGAAAGCTAACC ACTGAAATTGCTGTAGCTGTGAAGCTCCTCAATAATTCCATAGGAAAAGGGGAGGAATTCATCAATGAAGTGGGAACAATGGCAAGGATCCACCATGTCA ATGTTGTTCGCTTGATCGGTTTCTGTGCTGATGGATTTAGACGAGCTCTAGTTTATGAGTACTTGCCAAATGACTCGTTACAGAAGTTCATATCCTCAGC AGACTCAAGGAACCATTTCCTTGGCTGGGAAAGGTTGAATCGTGTTGCTCTAGGCATAGCCAAGGGGATTGAATATCTTCACCAGGGGTGTGATCAAAGA ATCCTCCATTTTGATATCAAACCACAGAATATCCTGCTTGACAACGAATTCAATCCCAAAATCGCCGATTTTGGGATGGCTAAGTTGTGTTCCAAGGATA AAAGTGCTATTTCCATGACGACTGCTAGGGGGACTGTTGGCTACATTGCCCCAGAAGTGTTCTCGAGGAACTTCGGGAATGTTTCCTATAAATCAGATGT TTACAGCTTTGGAATGTTAGTGTTGGAAATGGTTGGAGGAAGGAAGAACGTCGATGATACAGCAGAAAATGGCGACCAGATATACTTCCCGGAATGGATT TATAATCTCTTAGAAAAGGAAGAAGACCTGCGGTTTCATATCGATGGAGAAGAAGATGCTAAAATTGCAAAGAAACTAGCAATTGTGGGGCTGTGGTGCA TTCAGTGGAACCCAGCAGAGCGTCCTTCCATGAAAACTGTTGTCCAAATGCTTGAAGGGGAAGGTGAAAACTTAACAAAGCCTCCTGATCCTTTTAGCTC CTCTGTCCCTAAGAGAACAAGTGCAGGCCACATGCCAGCGAGACGCCTTCACCAAGAGTTGGCAGCCATCTCAGAAATAGAGTGA
AA sequence Show only first row Show all	>Potri.017G035500.1 pacid=42813047 polypeptide=Potri.017G035500.1.p locus=Potri.017G035500 ID=Potri.017G035500.1.v4.1 annot-version=v4.1 MMNYSSEMVTCLFYFFIVFLAGHGASLNNTGSCGNRGPDIRFPFRNMDKQPDHCGCPGFDLSCSDDNSTVLKLPTGLSFLIERIDYRHQLIYARDPQGCF PGQRLNFSLGASHFQIKNDWLYDWTLFNCSLSSEKRSGFMYKIPCLSTFNHEVYAFDSSTTISDSDLLSCTKMYNIYGISYSMIPEENDVLTMSWSNPTC ESSETECYLQHTKDVRPKLLITGVILGFFLFAIVIIALYRAYSNDKTQREYQARVEMFLDDYRSLNPTRYSYADLKRITNQFGDELGQGAYGTVFKGKLT TEIAVAVKLLNNSIGKGEEFINEVGTMARIHHVNVVRLIGFCADGFRRALVYEYLPNDSLQKFISSADSRNHFLGWERLNRVALGIAKGIEYLHQGCDQR ILHFDIKPQNILLDNEFNPKIADFGMAKLCSKDKSAISMTTARGTVGYIAPEVFSRNFGNVSYKSDVYSFGMLVLEMVGGRKNVDDTAENGDQIYFPEWI YNLLEKEEDLRFHIDGEEDAKIAKKLAIVGLWCIQWNPAERPSMKTVVQMLEGEGENLTKPPDPFSSSVPKRTSAGHMPARRLHQELAAISEIE

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G66920			Protein kinase superfamily pro...		Potri.017G035500 [exp]	0	1
AT1G75800			Pathogenesis-related thaumatin...		Potri.001G221500 [exp]	2.82	0.9371
AT1G75800			Pathogenesis-related thaumatin...		Potri.001G284305 [exp]	3.46	0.9222
AT2G40610		ATHEXPALPHA1.11...	expansin A8 (.1)		Potri.016G135200 [exp]	4.24	0.8868	PtEXPA13,EXP2.9
AT1G75800			Pathogenesis-related thaumatin...		Potri.001G221700 [exp]	7.07	0.8920
AT1G75800			Pathogenesis-related thaumatin...		Potri.001G221800 [exp]	8.48	0.9018
AT1G69040		ACR4	ACT domain repeat 4 (.1.2)		Potri.012G083000 [exp]	11.31	0.8603
					Potri.010G226200 [exp]	13.41	0.8276
					Potri.008G036000 [exp]	13.85	0.8506
AT5G54630	C2H2ZnF		zinc finger protein-related (....		Potri.011G131300 [exp]	15.49	0.8546
AT5G58660			2-oxoglutarate (2OG) and Fe(II...		Potri.001G278200 [exp]	23.06	0.8730

Compare expression of checked genes

Potri.017G035500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.