Plant FIBer expression Database

Potri.017G035700 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT2G43250 727 / 0 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.007G124700
[exp]
1102 / 0 AT2G43250 663 / 0.0 unknown protein
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10040469
[exp]
693 / 0 AT2G43250 598 / 0.0 unknown protein
PFAM info
Representative CDS sequence
>Potri.017G035700.2 pacid=42813193 polypeptide=Potri.017G035700.2.p locus=Potri.017G035700 ID=Potri.017G035700.2.v4.1 annot-version=v4.1
ATGGCACTTGCATTTATCTATAGTCTACAAAACGTGTGGCCTTTTTCAATATTGAAAGTTGATGATTTGAAAGCATCTAATGAAATAGTTAGGAAGCTTT
CTATACCAGAAAACACGAAAAGATTTGTTTTTGCAGTTCGCGATCCGAAATCTCAATCTGTGATTTATATACTCTGTGCTCAGAATTTATCTGAGAGGTC
GGCTGTAGACGTTGAGTGCCTTGTTAGGGAGGTTCGACCAGATGCTGTAGTGGCTCAGGTGGGTCATTCGGCGTTGGTTGATATTCAAACTGAAGAGAGT
GAATTAGGAAATATTGTTGATGAGCTAGTTCCCACTTCGTCATTTGGAGTGATTAAAAGATGCTTTTTAGAAAAGATTAATAAGGAAAAGTATGAAGATG
TGGCTGGCAACTTGGTTTTGAGAGAAATGTTTGGGACTAGTTTTCACGGGCATATCTTGGCTGCCAGGAGGGTGGCCAAGGAGGTCGGTTCATCTTTTTT
GGTGCTGGAAACATCATCCATTGATACAGTTATCGGGGACATTAATTCGAGTGAAGCTGACACAGGGAGCAAATTTCATGCTTTTGTTAGTAGTTTAGTG
CCACAGAATGTGGGTTCGATTGCTTTGCAAAGTTCAAAGAGGTTTAGTCTTGATGATAATGTTCAGTCACGGATGGTGAAGTTGTTATCTTCTTATATGG
ATGTGTCATTGTGGAAGTTGAGTCCATCAAGTTCTGTTTCAGAGTCAGGATTAAAAGAAATTCAGCCAGGAAACACTTTCCAGGTGCCACCATTCGCCCA
ATCTGTTTATCCATTACTCCTGGATCTACATAATATATTTATTGATCTCCCATTCATTGGGAGGGCTTTAGCCTTTGCACAGAAAATGCTAGATGATGTA
AACAGGGGGGAAGCTGTGGATACCCAAATTATATCTGAAGTGCACACCTTCCGAGTTGCTGTTGAGGGGCTGAGAATTGCCCTTAACAGTGCCGGTCGAT
TGCCCATTAAAGAAGCGGGGAAGCCCAACAAGACTAAAGTTGAGTTTTCAGAGCTTCAGGTTCAGGACAAGTCATATGCACTCATTGCACAGGCCCTTCA
AAGCCAGACTAGGAATTTCAAGACTATAGTAGCCGTGGTGGATGCTAGTGGCTTAGCAGGTATTAGGAAACATTGGAACACTCCTGTTCCTCCAGAAGTG
AAGGATTTGGTTGGGAAGCTTGTCACTAATTGTGAAAGTGATGGAGAAGTTCCTAATCATGATGAAAAGAGACGGCTACTTTCTAACAAACCTATGGTGG
CAGTTGGAGCTGGGGCAACAGCAATTTTTGGAGCTTCGTCTCTTTCCAAAGTTGTTCATGCATCGACATTCATGAAGGTTGTTACATTTAAATTTCCTAC
TGCCCTTAAGCTTTTGCTGATCCAAACTCAAAAGATAATGGCAATATCTATGGGCAAGACTCTTGGTCCAACAAAACTGCTGGCCCCTGGACTGGCCAAT
TCTGGAGCCAATGCAACATCTGCGTTGAAAGCAGCTGTTTCTGCTGAGAAAATCCGGACAGTGGTCCACAGTGTTATAGCCTCTGCTGAGAAAACCAGTT
TTTCAACTATGAGAACAGCTTTCTATGAAATAATGAGAAAACGGCAGGTGCAACCTATTGGTGTCCTACCTTGGACAGCATTTGGTTGCAGTGTTGCAAC
TTGCTCAGCATTGCTCATGTATGGAGATGGGATTGAATGTGCTGTTGAATCTCTTCCTGCAGCCCCGTCAATTGCCAGTTTGGGTCGTGGGATTCAAAGT
TTGCACCAGGCATCTCAAGTAGTTGTGCAGACAGATGGCACCAGAATACAAACATCTATAGAGTCTTTGATGAACAGGTTGAGGAAAGTAAAGATGCAAT
AA
AA sequence
>Potri.017G035700.2 pacid=42813193 polypeptide=Potri.017G035700.2.p locus=Potri.017G035700 ID=Potri.017G035700.2.v4.1 annot-version=v4.1
MALAFIYSLQNVWPFSILKVDDLKASNEIVRKLSIPENTKRFVFAVRDPKSQSVIYILCAQNLSERSAVDVECLVREVRPDAVVAQVGHSALVDIQTEES
ELGNIVDELVPTSSFGVIKRCFLEKINKEKYEDVAGNLVLREMFGTSFHGHILAARRVAKEVGSSFLVLETSSIDTVIGDINSSEADTGSKFHAFVSSLV
PQNVGSIALQSSKRFSLDDNVQSRMVKLLSSYMDVSLWKLSPSSSVSESGLKEIQPGNTFQVPPFAQSVYPLLLDLHNIFIDLPFIGRALAFAQKMLDDV
NRGEAVDTQIISEVHTFRVAVEGLRIALNSAGRLPIKEAGKPNKTKVEFSELQVQDKSYALIAQALQSQTRNFKTIVAVVDASGLAGIRKHWNTPVPPEV
KDLVGKLVTNCESDGEVPNHDEKRRLLSNKPMVAVGAGATAIFGASSLSKVVHASTFMKVVTFKFPTALKLLLIQTQKIMAISMGKTLGPTKLLAPGLAN
SGANATSALKAAVSAEKIRTVVHSVIASAEKTSFSTMRTAFYEIMRKRQVQPIGVLPWTAFGCSVATCSALLMYGDGIECAVESLPAAPSIASLGRGIQS
LHQASQVVVQTDGTRIQTSIESLMNRLRKVKMQ

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT2G43250 unknown protein Potri.017G035700
[exp]
0 1
AT1G03760 Prefoldin chaperone subunit fa... Potri.017G012500
[exp]
6.63 0.6604
AT1G35430 unknown protein Potri.019G079800
[exp]
10.00 0.6112
AT1G18470 Transmembrane Fragile-X-F-asso... Potri.015G050300
[exp]
19.13 0.5985
AT3G05320 O-fucosyltransferase family pr... Potri.015G117500
[exp]
21.21 0.5572
AT1G47056 VFB1 VIER F-box proteine 1 (.1) Potri.014G023500
[exp]
23.91 0.5803
AT1G80650 RTL1 RNAse THREE-like protein 1 (.1... Potri.003G179700
[exp]
28.74 0.5978
AT1G69340 appr-1-p processing enzyme fam... Potri.010G161500
[exp]
33.22 0.5686
AT1G72160 Sec14p-like phosphatidylinosit... Potri.019G079500
[exp]
41.23 0.5477
AT3G24490 Trihelix Alcohol dehydrogenase transcri... Potri.001G179800
[exp]
43.26 0.5953
AT2G45500 AAA-type ATPase family protein... Potri.014G071900
[exp]
46.98 0.5396

Potri.017G035700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.