Plant FIBer expression Database

Potri.017G036200 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G54380 265 / 1e-79 spliceosome protein-related (.1)
AT2G42510 0 / 1 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.007G124150
[exp]
1005 / 0 AT1G54380 253 / 2e-75 spliceosome protein-related (.1)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10022813
[exp]
258 / 9e-79 AT1G54380 283 / 2e-91 spliceosome protein-related (.1)
Lus10011880
[exp]
176 / 2e-48 AT1G54380 281 / 3e-90 spliceosome protein-related (.1)
Lus10026705
[exp]
66 / 4e-11 ND 45 / 5e-05
Lus10025495
[exp]
62 / 6e-10 AT1G54380 50 / 1e-06 spliceosome protein-related (.1)
Lus10023803
[exp]
46 / 3e-06 ND 34 / 0.003
PFAM info
Representative CDS sequence
>Potri.017G036200.1 pacid=42812957 polypeptide=Potri.017G036200.1.p locus=Potri.017G036200 ID=Potri.017G036200.1.v4.1 annot-version=v4.1
ATGACCAAAGCTTTGTTCTTTTCTGGTTTGGAGAAAACAGAACTCGAGATGGCTGATGATACGTCGGTTGGGCCCGAAATAAGAATCACAGAGATTGAAG
AAGAACCTCTCCTTCAACAGCCACAAGAAGAAGAAGACCCAAATGGATCATCTTTGTTGATTCTTTCACCTACACAAGCAGACCAAGAAGAAACCAACAA
TCAAGACCAACCAAGTCCAACTTCTTTCAAGAATGTAAAGTTCTCCTCTTTAACTGAATCTGATACTAATTTTGGTGAGAAAGAAGAACTGGGCTTGGAA
GGAAATGAAGTAAAGTTTGACTATTTGATTGGAAAGAAGGTTGCTTATTGTGAATTGGTTTCTGGGTCTTTTGAAAGTGGAGATTTTGATGATAAGATTG
AGAGTTCTGGTGTGAAAGTGCTAGAAACTGAGACTTCTGTGGATGGTGTATTGAATAAAGGAGAGATTGAATGGAGTGTTGATGGTGTGAAAGAAGTGAA
AGAGAAGGGGAAAGATTTTGTAGGAAGTGAATGCTTCGAGGCTGAGATGGGTTTAGGTTCCGAAGACAATAAAGAGTTTGTGATGGTGAAAGAGATTGGA
GGAGAAAGTTCATTGGAAGCAAAGAAGAAGCAATTATTGGAAGAACTTCAAGATGGTTCGATCTTTAAAAACAAAACCAATGTGGATAATAATGTTGATG
GCTTTGACACTGGTGTGGGAATCTCGGGGATACTCAAAGGATCTGATGAATCTGTCAAACGTTCTTTGAAGATTGAAATGATTGATCATACAGTGTTGAT
TGAACCAGCTTCTGTAACCAAAACTGGTAATGGTGGTGGTAATGTTGCCGAGAGGAATGGAAAGAAGAACGGTAAACATGAAACTGATGAAAAGAAGGTA
AAAAGGCCGCGGAGAAGGGGAAAGATTGCAACGAAGGGTGGTTTGGAGACAAGCGAAGGGCAAAAGAAAGTGACCCAAATTGATGAAGCTCAAAAGAGAA
CAATTGATGTTGGTGAAGTTCGAAATGGCTGTGAAACAGACGGGGACCAGATGAAGAGGAAGTACTCAAGGGAGGAAATGAAGGTCCTGAGGTTTGCAAA
TATTGTAGAACAGCGAAAATTGTGGAGAGATATATACACTGGACTTGGAGATGATGCTGTGGAGGGCTATAAAGACTTGGCAAGTTCAAAGCATCATAAG
AACGTTTCCTTGAACTTCAATCCTTGGGAGCATTTTGGAAGGAAGGAACCTGACATTCCTGGGGAAGAATCTTCTGAAATCGTGGACGATGGATTAGAAA
ACATGGAAGTAGATGGGGGGGTGCAAAATGCTGATCTCTTGGATCCTGCTTGCAGTAACAGTATTGAGGGTGAAGGTACTGATACAGTTTTGGAAGAAGC
GTATGGTGAAGAAGTTGACAGCGATGATGATTATGCTAGCATTCAGAGGCCTGCTTTTGCAGTAGAAGGAGAACCAGATTTTGATTCTGGACCTCCAGAG
GATGGATTAGAATTCCTCAGGCGTGTCAGGTGGGAGGCTGCTCACATTCCAAAAGTTAAAGTAGCCAAGCTTGACAGGAGCAGAGTTAACAAAGAACAAA
CTGTTTATATGCCCCAGATTCCTAACATTGCCAAGTGTCCAGAGTATTTACTGCCATTGAAGCAGTGGGAGGATGCATTTCTTGTTGATTTTTCTGAGCT
GCGACAGTTTCTGTCTCAAGATGACGGTTCCAGCACTAGAATTTCCCAGAAGATGCAACCAGCAGCTATTGTTCTTGGGAATTCTTCCCCTCAGCATGCT
GAAAGTATTGTTGTTGAGAGATCCAATATCCTTGGAACTGAAACTGATGAAGTCCAATCCTACAAACCTCTCGATACTTCCAGTGCTGAGAACGCCATTG
ATCACCCATGCATGGCGAATGTTGAAGACTGTAGAAACTTAACATCTTCTCAGATTCCAACTCCTGAAGCTTCTTGCAGTGATGCTTTATGCAACTACCC
TACCTTGTCTGTGATTTTAGCTATGGATTGTGTTGCTCGAGTTTCAATGCTGAGGAAACGCATAAAATTGGCAGAAACCATGGACACACTGTCAAAGAAT
GACTGTGTGTGGCTATTTGCCTTATGTGCAGCAGTTGATGCTCCACTAGATGCTGACACGTGCGCTGCTCTTCGGGGTCTGCTCCGAAAATGCGCAAGCT
TGCGAGCTAGCAAATCTGAACATGATGATGAGGTTATCATGCTGAATATTCTCGCCACAATTTCAGGCAGGTATTTTGGACAGTCTGAAAGCTGA
AA sequence
>Potri.017G036200.1 pacid=42812957 polypeptide=Potri.017G036200.1.p locus=Potri.017G036200 ID=Potri.017G036200.1.v4.1 annot-version=v4.1
MTKALFFSGLEKTELEMADDTSVGPEIRITEIEEEPLLQQPQEEEDPNGSSLLILSPTQADQEETNNQDQPSPTSFKNVKFSSLTESDTNFGEKEELGLE
GNEVKFDYLIGKKVAYCELVSGSFESGDFDDKIESSGVKVLETETSVDGVLNKGEIEWSVDGVKEVKEKGKDFVGSECFEAEMGLGSEDNKEFVMVKEIG
GESSLEAKKKQLLEELQDGSIFKNKTNVDNNVDGFDTGVGISGILKGSDESVKRSLKIEMIDHTVLIEPASVTKTGNGGGNVAERNGKKNGKHETDEKKV
KRPRRRGKIATKGGLETSEGQKKVTQIDEAQKRTIDVGEVRNGCETDGDQMKRKYSREEMKVLRFANIVEQRKLWRDIYTGLGDDAVEGYKDLASSKHHK
NVSLNFNPWEHFGRKEPDIPGEESSEIVDDGLENMEVDGGVQNADLLDPACSNSIEGEGTDTVLEEAYGEEVDSDDDYASIQRPAFAVEGEPDFDSGPPE
DGLEFLRRVRWEAAHIPKVKVAKLDRSRVNKEQTVYMPQIPNIAKCPEYLLPLKQWEDAFLVDFSELRQFLSQDDGSSTRISQKMQPAAIVLGNSSPQHA
ESIVVERSNILGTETDEVQSYKPLDTSSAENAIDHPCMANVEDCRNLTSSQIPTPEASCSDALCNYPTLSVILAMDCVARVSMLRKRIKLAETMDTLSKN
DCVWLFALCAAVDAPLDADTCAALRGLLRKCASLRASKSEHDDEVIMLNILATISGRYFGQSES

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT1G54380 spliceosome protein-related (.... Potri.017G036200
[exp]
0 1
AT3G54980 Pentatricopeptide repeat (PPR)... Potri.006G250700
[exp]
5.29 0.7550
AT5G16420 Pentatricopeptide repeat (PPR-... Potri.012G031600
[exp]
9.16 0.7402
AT3G58110 unknown protein Potri.019G091700
[exp]
15.87 0.7371
AT5G13010 EMB3011 embryo defective 3011, RNA hel... Potri.010G172500
[exp]
21.81 0.7307
AT2G39260 binding;RNA binding (.1) Potri.008G045400
[exp]
25.21 0.7097
AT3G23900 RNA recognition motif (RRM)-co... Potri.017G058300
[exp]
26.32 0.6906
AT1G13030 sphere organelles protein-rela... Potri.008G185100
[exp]
35.77 0.6938
AT5G59900 Pentatricopeptide repeat (PPR)... Potri.001G236800
[exp]
39.79 0.6430
AT1G72440 SWA2, EDA25 SLOW WALKER2, embryo sac devel... Potri.001G164100
[exp]
39.98 0.6830
AT5G15280 Pentatricopeptide repeat (PPR)... Potri.017G086000
[exp]
42.66 0.6718

Potri.017G036200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.