Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G59350 632 / 0 Protein kinase superfamily protein (.1.2.3) AT2G43230 619 / 0 Protein kinase superfamily protein (.1.2) AT2G30740 578 / 0 Protein kinase superfamily protein (.1) AT1G06700 575 / 0 Protein kinase superfamily protein (.1.2) AT2G30730 496 / 1e-176 Protein kinase superfamily protein (.1) AT2G47060 485 / 2e-171 PTI1-4 Pto-interacting 1-4, Protein kinase superfamily protein (.1.2.3.4.5) AT1G48210 480 / 4e-170 Protein kinase superfamily protein (.1.2) AT3G17410 476 / 1e-168 Protein kinase superfamily protein (.1) AT2G41970 473 / 3e-167 Protein kinase superfamily protein (.1) AT3G62220 468 / 2e-165 Protein kinase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G124000 [exp] 674 / 0 AT2G43230 582 / 0.0 Protein kinase superfamily protein (.1.2) Potri.002G188600 [exp] 485 / 5e-172 AT3G62220 595 / 0.0 Protein kinase superfamily protein (.1) Potri.016G059600 [exp] 484 / 2e-171 AT2G41970 600 / 0.0 Protein kinase superfamily protein (.1) Potri.006G194000 [exp] 481 / 2e-170 AT2G41970 586 / 0.0 Protein kinase superfamily protein (.1) Potri.014G114200 [exp] 478 / 4e-169 AT3G62220 577 / 0.0 Protein kinase superfamily protein (.1) Potri.010G001500 [exp] 442 / 3e-155 AT1G48210 494 / 3e-176 Protein kinase superfamily protein (.1.2) Potri.002G194700 [exp] 291 / 9e-92 AT4G02010 958 / 0.0 Protein kinase superfamily protein (.1) Potri.014G119100 [exp] 290 / 6e-91 AT4G02010 993 / 0.0 Protein kinase superfamily protein (.1) Potri.014G194300 [exp] 287 / 2e-89 AT2G20300 966 / 0.0 Abnormal Leaf Shape 2, Protein kinase superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025498 [exp] 681 / 0 AT3G59350 630 / 0.0 Protein kinase superfamily protein (.1.2.3) Lus10026708 [exp] 676 / 0 AT3G59350 625 / 0.0 Protein kinase superfamily protein (.1.2.3) Lus10026706 [exp] 652 / 0 AT3G59350 613 / 0.0 Protein kinase superfamily protein (.1.2.3) Lus10025496 [exp] 648 / 0 AT3G59350 610 / 0.0 Protein kinase superfamily protein (.1.2.3) Lus10010072 [exp] 493 / 4e-175 AT3G62220 592 / 0.0 Protein kinase superfamily protein (.1) Lus10009983 [exp] 493 / 4e-175 AT3G62220 586 / 0.0 Protein kinase superfamily protein (.1) Lus10038042 [exp] 491 / 2e-174 AT3G62220 588 / 0.0 Protein kinase superfamily protein (.1) Lus10004524 [exp] 490 / 7e-174 AT3G62220 591 / 0.0 Protein kinase superfamily protein (.1) Lus10016247 [exp] 486 / 3e-172 AT2G41970 563 / 0.0 Protein kinase superfamily protein (.1) Lus10029295 [exp] 486 / 3e-172 AT2G41970 562 / 0.0 Protein kinase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF07714 [poplar] [flax] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase
Representative CDS sequence Show only first row Show all	>Potri.017G036300.1 pacid=42814543 polypeptide=Potri.017G036300.1.p locus=Potri.017G036300 ID=Potri.017G036300.1.v4.1 annot-version=v4.1 ATGGACAAGGATTATATTCATCGTAATTATGGGGCACATGCGCCATCTCCTGGGCGCTTTGTGCGATTGGAGAGAACACAAGGTGGTGGTGGTGGTGAAG GGGGTGGAGACGAGTTATTTCCGAGGAAAAGAGACAAGATGCGTCGGTGGCTTTGTTGTACCTGTCAGGTAGAGGAGTCGTACCCACCATATGAGAGCGA GCGCTTAAGAAGCCCGAGAAACTACGGAGATGGGTATCCTAAAGGCTCAAAAGTAGCAGCTCCTGTCAAAGCTGAATTACAGAAGGAAGCACCACCTATT GAAGTGCCTGCATTGTCTTTGGAAGAACTGAAAGAGAAGACTGACAATTTCGGGTCGAAAGCATTGATCGGTGAAGGTTCCTATGGAAGAGTTTATTATG CAAGCTTAGAAAATGGAAAAGCTGTGGCTGTAAAAAAACTTGATGTTGCAAGTGAGCCGGAGACAAATTTTGAATTTTTGACTCAGGTTTCCATGGTCTC AAGGTTGAAGAATGAAAATGTTGTGGAGTTGCTCGGGTACTGTGTAGAAGGAAATCTCCGAGTGCTTGCATATGAGTTTGCAACAATGGGATCCCTACAT GACATATTGCATGGTAGAAAGGGAGTTCAAGGTGCACAGCCAGGACCAGTGCTTGACTGGATTCAGCGAGTGAAAATTGCAGTTGATGCAGCAAGGGGTT TGGAATACTTGCATGAGAAGCTACAACCAGCTATAATACACAGAGATATCAGATCAAGCAATGTGCTCCTCTTTGAAGACTTCAAAGCGAAGATTGCAGA TTTTAACCTTTCAAATCAGGCTCCTGACATGGCTGCTCGCCTTCATTCAACTCGAGTTTTAGGAACCTTTGGTTATCATGCTCCTGAGTATGCAATGACT GGACAATTGACACAGAAGAGCGATGTTTACAGTTTTGGAGTAGTTCTCCTAGAGCTTCTTACTGGGAGGAAACCTGTTGATCACACCATGCCACGTGGGC AACAGAGTCTTGTTACTTGGGCAACTCCAAGACTGAGTGAAGACAAAGTTAAACAATGTGTAGATCCAAAGCTGAAGGGGGAATACCCCCCTAAAGGAGT TGCCAAGATGGCAGCCGTGGCAGCATTATGTGTGCAGTATGAATCTGAGTTCCGGCCAAATATGAGCATTGTTGTCAAGGCTCTCCAACCTCTTTTGAAG TCAGTTGCTCCTGCTGCTCCAGAGACCTAA
AA sequence Show only first row Show all	>Potri.017G036300.1 pacid=42814543 polypeptide=Potri.017G036300.1.p locus=Potri.017G036300 ID=Potri.017G036300.1.v4.1 annot-version=v4.1 MDKDYIHRNYGAHAPSPGRFVRLERTQGGGGGEGGGDELFPRKRDKMRRWLCCTCQVEESYPPYESERLRSPRNYGDGYPKGSKVAAPVKAELQKEAPPI EVPALSLEELKEKTDNFGSKALIGEGSYGRVYYASLENGKAVAVKKLDVASEPETNFEFLTQVSMVSRLKNENVVELLGYCVEGNLRVLAYEFATMGSLH DILHGRKGVQGAQPGPVLDWIQRVKIAVDAARGLEYLHEKLQPAIIHRDIRSSNVLLFEDFKAKIADFNLSNQAPDMAARLHSTRVLGTFGYHAPEYAMT GQLTQKSDVYSFGVVLLELLTGRKPVDHTMPRGQQSLVTWATPRLSEDKVKQCVDPKLKGEYPPKGVAKMAAVAALCVQYESEFRPNMSIVVKALQPLLK SVAPAAPET

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G59350			Protein kinase superfamily pro...		Potri.017G036300 [exp]	0	1
AT5G49610			F-box family protein (.1)		Potri.007G027300 [exp]	1.00	0.7258
AT2G43070		ATSPPL3	ARABIDOPSIS THALIANA SIGNAL PE...		Potri.014G150000 [exp]	4.00	0.6713
AT4G36750			Quinone reductase family prote...		Potri.005G126200 [exp]	6.00	0.7253
AT2G45140		PVA12	plant VAP homolog 12 (.1)		Potri.014G060900 [exp]	17.86	0.5859	Pt-VAP27.5
AT5G03250			Phototropic-responsive NPH3 fa...		Potri.016G090400 [exp]	18.49	0.6257
AT5G46800		BOU	A BOUT DE SOUFFLE, Mitochondri...		Potri.003G091500 [exp]	21.97	0.6763	Pt-BOU.2
AT5G63940			Protein kinase protein with ad...		Potri.007G102400 [exp]	25.92	0.5629
AT1G09580			emp24/gp25L/p24 family/GOLD fa...		Potri.003G019300 [exp]	26.73	0.6678
AT1G14340			RNA-binding (RRM/RBD/RNP motif...		Potri.017G081500 [exp]	27.00	0.5876
AT3G25570			Adenosylmethionine decarboxyla...		Potri.010G133900 [exp]	28.14	0.5723	SAMDC.2

Compare expression of checked genes

Potri.017G036300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.