Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G18110 1949 / 0 EMB1270 embryo defective 1270, Pentatricopeptide repeat (PPR) superfamily protein (.1) AT5G02860 253 / 3e-70 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT4G31850 239 / 2e-64 PGR3 proton gradient regulation 3 (.1) AT2G18940 223 / 4e-60 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT5G55840 218 / 2e-57 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G74850 209 / 1e-55 PDE343, PTAC2 PIGMENT DEFECTIVE 343, plastid transcriptionally active 2 (.1) AT2G31400 207 / 9e-55 GUN1 genomes uncoupled 1 (.1) AT1G09900 192 / 3e-51 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) AT1G74580 194 / 6e-51 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT3G06920 190 / 3e-49 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G123900 [exp] 2630 / 0 AT3G18110 1974 / 0.0 embryo defective 1270, Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.006G264800 [exp] 260 / 7e-71 AT4G31850 1428 / 0.0 proton gradient regulation 3 (.1) Potri.009G092100 [exp] 238 / 6e-65 AT5G02860 1146 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.001G297300 [exp] 233 / 2e-63 AT5G02860 1129 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.015G105400 [exp] 229 / 4e-61 AT5G61990 773 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.006G166200 [exp] 217 / 4e-58 AT2G18940 1082 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.010G014100 [exp] 211 / 7e-56 AT3G06920 1404 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.015G069100 [exp] 204 / 7e-54 AT1G74850 1268 / 0.0 PIGMENT DEFECTIVE 343, plastid transcriptionally active 2 (.1) Potri.004G074500 [exp] 198 / 2e-53 AT1G62930 478 / 1e-162 RNA processing factor 3, Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039149 [exp] 1029 / 0 AT3G18110 976 / 0.0 embryo defective 1270, Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10039148 [exp] 745 / 0 AT3G18110 688 / 0.0 embryo defective 1270, Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10013785 [exp] 338 / 3e-105 AT3G18110 296 / 3e-91 embryo defective 1270, Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10002107 [exp] 268 / 2e-75 AT5G02860 1040 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10013894 [exp] 270 / 3e-75 AT5G02860 1047 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10003424 [exp] 253 / 5e-69 AT4G31850 1373 / 0.0 proton gradient regulation 3 (.1) Lus10026206 [exp] 221 / 3e-58 AT5G14770 717 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10020002 [exp] 208 / 6e-55 AT2G18940 1015 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10015530 [exp] 204 / 7e-54 AT2G18940 1010 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10006962 [exp] 204 / 7e-54 AT2G18940 976 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [poplar] [flax] TPR PF01535 [poplar] [flax] PPR PPR repeat CL0020 [poplar] [flax] TPR PF13041 [poplar] [flax] PPR_2 PPR repeat family CL0020 [poplar] [flax] TPR PF13812 [poplar] [flax] PPR_3 Pentatricopeptide repeat domain
Representative CDS sequence Show only first row Show all	>Potri.017G036400.1 pacid=42812838 polypeptide=Potri.017G036400.1.p locus=Potri.017G036400 ID=Potri.017G036400.1.v4.1 annot-version=v4.1 ATGAGTGGAAGCATGGAGTGCAGAGGAGTCCTGGCTCTTATATCACCACCACCTTCAAAGGTATGCAAAAGCACACCTCTTTCTTGCTCTTTACATCATT CTTCACCCTCCACTGCCACTACTGAACTTAACAGCAACAATAATGATAGTAGGAGTGATGCCCCACAAAAGTTTAGCTATAGCAGAGCTTCACCATCAGT CAGATGGCCTCAACTTAAACTGAACGAAACTTACTACCCCTCCTCTCAAACCCAATCAACTGAAATGTCTAAAGATGGAAACTTGAACCATTCCTCACAT AACCAATTGGCTGAAATGTCTAAAGATGGAATCTTGGGTGTGGGCTCTCCTGAATTGAATGATGATGTTGATGTTGATGATGATGGGAATGAAGAAGAAA AGTTGGGGTGGAGGCAAAGTAGGACTAGAGTTAAGAAAATGAATAAATTAGCACTTAGGAAGGCTAAAGATTGGAGGGAGAGGGTGAAATATTTTACTGA CAGGATATTAGGATTGAAACAAGACCAGTTTGTGGCTGATGTTCTCGATGATAGGAAAGTGCAGATGACACCAACTGATTTTTGCTTTGTGGTTAAGTCT GTGGGCCAGGAAAGTTGGCACCGGGCATTTGAGGTCTATGAGTGGTTGAATTTGCGCCATTGGTATTCCCCCAATGCGCGGATGCTATCCACTATTTTGG CTGTTTTGGGAAAGGCCAATCAAGAGCCATTGGCTGTGGAAGTATTTACTAGGGCAGAACCTTCAGTTGAGAATACTGTGCAAGTTTATAATGCCATGAT GGGTGTATATGCACGGAGTGGTAAGTTTAATAAGGTCCAAGAACTGTTTGATTTGATGCGTGAAAGAGGGTGTGAGCCAGACCTTGTTAGTTTCAATACA TTGATAAATGCTCGATTGAAAGCAGGTGAAATGACGCCTAATTTGGCTATTGAGCTATTAACTGAAGTGAGAAGATCGGGTCTTCGACCAGATATAATTA CTTATAATACTCTTATCAGTGCTTGTTCACGGGCATCGAATTTGGAGGAGGCTGTTAATGTTTTTGATGATATGGTGGCACATCATTGCGAACCTGATCT GTGGACTTATAATGCCATGATTTCAGTTTATGGAAGATGCGGACTGTCTGGCAAAGCAGAGCAGCTTTTTAATGACCTGGAGTCGAGAGGGTTTTTTCCA GATGCCGTGAGTTATAATTCATTGCTGTACGCTTTCGCAAGAGAAGGGAATGTGGAGAAAGTGAAAGATATATGTGAGGAAATGGTGAAAATAGGGTTTG GCAAAGATGAGATGACGTACAACACTATGATCCACATGTATGGTAAGCAAGGTCAGAATGATCTAGCATTACAGCTTTACAGGGACATGAAGTCATCAGG CCGGAATCCTGATGTGATTACATATACTGTTTTAATTGATTCGCTTGGGAAGACAAACAAAATAGAGGAGGCTGCTGGTATGATGTCAGAGATGTTGAAC ACAGGAGTTAAACCTACCTTAAGGACGTATAGTGCTTTGATTTGTGGGTATGCCAAGGCCGGGAAACCAGTGGAGGCTGAAGAGACTTTTGATTGCATGC TCAGGTCTGGAACTAGACCTGACCAACTAGCATACTCGGTTATGCTGGACATCCATCTAAGATTTAATGAGCCGAAGAGGGCAATGACTTTTTACAAGGA AATGATTCATGATGGTATTATGCCGGAACATTCCCTTTATGAGTTGATGCTCCGAACTCTTGGGAATGCAAACAAAGTGGAAGATATTGGAAGAGTTGTC AGAGATATGGAAGAAGTATGTGGCATGAACCCGCAAGCTATTTCTTATATTCTCGTCAAGGGTGATTGCTATGATGAAGCTGCAAAAATGCTGCGACGGG CAATCAGTGATCGCTATGAAATCGACCGTGAGAATTTGTTGTCTATTTTGAGTTCATATAGTTCATCTGGGAGGCACTCTGTGGCACTTGACTTGCTTGA ATTATTGAAAGAACATACTCCCAGGTCCAGTCAAATGATTACTGAAGCTTTGGTTGTTATGCTTTGCAAGGCTCAGCAGTTAGATACTGCTTTAAAGGAA TACAGTAATAGTAGAGAACTTGGTTTTACTGGGAGTTTTACCATGTTTGAAGCTTTGATTCAATGCTGTTTAGAAAATGAACTTTTTACTGAAGCTTCTC AGGTTTTTTCTGACATGAGGTTCTGCGGTATCAAAGCATCTGAATGTCTGTACCAAAGCATGATGCTTTTGTATTGTAAAATGGGGTTCCCGGAAACAGC CCATCATCTAATTGATCTCACAGAAACAGATGGCACAGTTTTGAATAATATATCTGTTTATGTCGATGTGATCGAGGCATATGGAAGATTGAAGCTATGG CAGAAAGCAGAGAGTGTAGCCGGGAATATGAGACAAAGTTGCATTACTGTGAACCGTAAAGTCTGGAATGCTTTAATAGAAGCTTATGCTGCAAGTGGCT GTTATGAGCGAGCCAGGGCTGTTTTTAATACGATGATGAAAGATGGCCCTTCTCCAACTGTAGATTCCATTAATGGTCTCTTGCAAGCTCTGATTGTTGA TGGAAGATTGGAAGAACTTTATGTGGTAGTCCAGGAGTTGCAAGATATAGGTTTTAAAATAAGCAAAAGTTCTATTCTTTTGATGCTTGATGCATTTGCA AGGGCTGGGAACATATTTGAAGTGAAGAAAATATACCATGGAATGAAGGCTGCAGGTTATTTTCCCAGCATGCATCTTTACAGGGTAATGGCTCAGCTGT TATGCAGGGGAAAACAGGTAAGGGATGTTGAAGCCATGCTTTCTGAGATGGAAGAAGCAGGATTCAAGCCTGATCTTTCTATATGGAATTCTGTGCTCAA GATGTATGTAGCAATTGATGATTTTAGAAAGACAACTCAAATTTACCAGAGGATCAAGGAAGATGGGCTGGAGCCAGATGAAGACACTTACAATATATTA ATTGTGATGTACTGCCGAGATCATAGACCAAAGGAAGGTTTGGTACTGATGGATGAAATGAGAACGGTGGGATTGGAGCCTAAATTGGATACCTACAAAA GCTTAGTTGCATCATTTGGCAAGCAGCAGTTGGTGGAGCAAGCAGAGGAACTTTTTGAGGAGTTACAGTCAACAGGATGTAAATTAGATCGCTCTTTTTA TCATATAATGATGAAAATATATAGAAATTCTGGAAGTCATTCTAAAGCTCAAAGGCTATTTAGCATGATGAAAGATGAAGGAGTGGAACCCACTATTGCC ACAATGCATTTGCTTATGGTTTCCTATGGCAGCTCTGGGCAGCCTCAGGAGGCTGAAAAGGTGCTCTCTAATTTGAAAGAAACAGATGCAAATCTCAGTA CGCTACCATATAGTTCTGTTATTGATGCTTATCTCAGAAATGGAGATTACAATGCTGGAATTCAGAAACTGAAACAAGTGAAGGAAGAGGGCCTGGAACC AGATCACAGAATATGGACATGCTTTATTAGGGCTGCAAGTTTGTCCCGGCACACGAGTGAGGCCATTCTCCTCTTAAATGCTCTCCGAGATACTGGATTT GATCTTCCAATCAGGCTTCTAACAGAAAAACCTGAACCATTAGTTTCAGCACTGGACCAGTGCCTTGAGATGCTAGAAACCTTGGGAGACAATGCAGCCT TTAACTTTGTCAATGCATTAGAGGATTTGTTGTGGGCATTTGAACTTCGAGCCACTGCTTCATGGGTTTTTCTGTTGGCCATCAAGAGGAAAATATATCG CCATGATGTATTCAGGGTTGCTGACAAGGACTGGGGAGCTGATTTTAGAAAGTTGTCAGGCGGTGCAGCTCTTGTTGGTCTTACTTTATGGCTTGACCAC ATGCAGGATGCATCCTTGCAGGGATGTCCAGAATCTCCAAAATCAGTTGCTCTGATAACAGGGACAGCTGAATACAACATGGTGTCCCTTGACAGCACAT TGAAAGCATGCCTTTGGGAGATGGGTTCCCCGTTTCTTCCTTGTAAAACTCGGAGTGGGCTCCTCATAGCCAAGGCCCACTCCCTCAAAATGTGGTTGAA GGACTCTCCTTTCTGCCTGGACCTTGAGTTAAAAAATGCACCATCTCTCCCAGAATCAAACTCAATGCAACTAATAGAAGGATGCTTCATAAGGCGTGGT CTTGTTCCTGCATTTAAGGAGATAAATGAGAAGCTTGGATTTGTGAGACCGAAGAAATTTGCGAAGTTTGCTTTACTATCAGATGACAGAAGAGAAAAAG CCATTCAAGTGTTTATAGAGGGTGGGAAGGAAAAGAAGGAAAAGATGAAGAAGAGGGACGCAGGAAAAGGAAAGTCAAGGTCATGCTCAGAAAGATAA
AA sequence Show only first row Show all	>Potri.017G036400.1 pacid=42812838 polypeptide=Potri.017G036400.1.p locus=Potri.017G036400 ID=Potri.017G036400.1.v4.1 annot-version=v4.1 MSGSMECRGVLALISPPPSKVCKSTPLSCSLHHSSPSTATTELNSNNNDSRSDAPQKFSYSRASPSVRWPQLKLNETYYPSSQTQSTEMSKDGNLNHSSH NQLAEMSKDGILGVGSPELNDDVDVDDDGNEEEKLGWRQSRTRVKKMNKLALRKAKDWRERVKYFTDRILGLKQDQFVADVLDDRKVQMTPTDFCFVVKS VGQESWHRAFEVYEWLNLRHWYSPNARMLSTILAVLGKANQEPLAVEVFTRAEPSVENTVQVYNAMMGVYARSGKFNKVQELFDLMRERGCEPDLVSFNT LINARLKAGEMTPNLAIELLTEVRRSGLRPDIITYNTLISACSRASNLEEAVNVFDDMVAHHCEPDLWTYNAMISVYGRCGLSGKAEQLFNDLESRGFFP DAVSYNSLLYAFAREGNVEKVKDICEEMVKIGFGKDEMTYNTMIHMYGKQGQNDLALQLYRDMKSSGRNPDVITYTVLIDSLGKTNKIEEAAGMMSEMLN TGVKPTLRTYSALICGYAKAGKPVEAEETFDCMLRSGTRPDQLAYSVMLDIHLRFNEPKRAMTFYKEMIHDGIMPEHSLYELMLRTLGNANKVEDIGRVV RDMEEVCGMNPQAISYILVKGDCYDEAAKMLRRAISDRYEIDRENLLSILSSYSSSGRHSVALDLLELLKEHTPRSSQMITEALVVMLCKAQQLDTALKE YSNSRELGFTGSFTMFEALIQCCLENELFTEASQVFSDMRFCGIKASECLYQSMMLLYCKMGFPETAHHLIDLTETDGTVLNNISVYVDVIEAYGRLKLW QKAESVAGNMRQSCITVNRKVWNALIEAYAASGCYERARAVFNTMMKDGPSPTVDSINGLLQALIVDGRLEELYVVVQELQDIGFKISKSSILLMLDAFA RAGNIFEVKKIYHGMKAAGYFPSMHLYRVMAQLLCRGKQVRDVEAMLSEMEEAGFKPDLSIWNSVLKMYVAIDDFRKTTQIYQRIKEDGLEPDEDTYNIL IVMYCRDHRPKEGLVLMDEMRTVGLEPKLDTYKSLVASFGKQQLVEQAEELFEELQSTGCKLDRSFYHIMMKIYRNSGSHSKAQRLFSMMKDEGVEPTIA TMHLLMVSYGSSGQPQEAEKVLSNLKETDANLSTLPYSSVIDAYLRNGDYNAGIQKLKQVKEEGLEPDHRIWTCFIRAASLSRHTSEAILLLNALRDTGF DLPIRLLTEKPEPLVSALDQCLEMLETLGDNAAFNFVNALEDLLWAFELRATASWVFLLAIKRKIYRHDVFRVADKDWGADFRKLSGGAALVGLTLWLDH MQDASLQGCPESPKSVALITGTAEYNMVSLDSTLKACLWEMGSPFLPCKTRSGLLIAKAHSLKMWLKDSPFCLDLELKNAPSLPESNSMQLIEGCFIRRG LVPAFKEINEKLGFVRPKKFAKFALLSDDRREKAIQVFIEGGKEKKEKMKKRDAGKGKSRSCSER

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G18110		EMB1270	embryo defective 1270, Pentatr...		Potri.017G036400 [exp]	0	1
AT1G71240			Plant protein of unknown funct...		Potri.001G210200 [exp]	4.00	0.8942
AT2G30740			Protein kinase superfamily pro...		Potri.017G036501 [exp]	4.47	0.8808
AT5G16180		CRS1, ATCRS1	ARABIDOPSIS ORTHOLOG OF MAIZE ...		Potri.017G116700 [exp]	8.36	0.8859
AT1G13940			Plant protein of unknown funct...		Potri.010G162000 [exp]	8.66	0.8443
AT1G48650			DEA(D/H)-box RNA helicase fami...		Potri.015G042500 [exp]	11.22	0.8898
AT2G24120		PDE319, SCA3	SCABRA 3, PIGMENT DEFECTIVE 31...		Potri.018G103300 [exp]	12.36	0.8964
AT3G44110		ATJ3	DNAJ homologue 3 (.1.2)		Potri.001G215132 [exp]	14.00	0.8734
AT3G17630		ATCHX19	cation/H+ exchanger 19, cation...		Potri.010G005200 [exp]	15.29	0.8621
AT3G61700			Plant protein 1589 of unknown ...		Potri.012G001900 [exp]	16.43	0.8210
AT3G18110		EMB1270	embryo defective 1270, Pentatr...		Potri.007G123900 [exp]	18.30	0.8930

Compare expression of checked genes

Potri.017G036400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.