Plant FIBer expression Database

Potri.017G036600 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT2G43210 368 / 9e-122 Ubiquitin-like superfamily protein (.1.2)
AT4G00752 50 / 2e-06 UBX domain-containing protein (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.007G123800
[exp]
600 / 0 AT2G43210 330 / 6e-108 Ubiquitin-like superfamily protein (.1.2)
Potri.014G075600
[exp]
61 / 1e-09 AT4G00752 273 / 8e-87 UBX domain-containing protein (.1)
Potri.001G109500
[exp]
56 / 4e-08 AT4G11740 429 / 2e-144 Ubiquitin-like superfamily protein (.1)
Potri.003G122300
[exp]
54 / 2e-07 AT4G11740 409 / 1e-136 Ubiquitin-like superfamily protein (.1)
Potri.015G080200
[exp]
43 / 0.0005 AT4G10790 229 / 1e-70 UBX domain-containing protein (.1)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10025504
[exp]
390 / 5e-131 AT2G43210 355 / 1e-117 Ubiquitin-like superfamily protein (.1.2)
Lus10026718
[exp]
388 / 4e-130 AT2G43210 341 / 8e-112 Ubiquitin-like superfamily protein (.1.2)
Lus10026717
[exp]
386 / 4e-129 AT2G43210 338 / 8e-111 Ubiquitin-like superfamily protein (.1.2)
Lus10041365
[exp]
59 / 8e-09 AT4G11740 241 / 4e-74 Ubiquitin-like superfamily protein (.1)
Lus10036564
[exp]
56 / 6e-08 AT4G00752 250 / 8e-78 UBX domain-containing protein (.1)
Lus10029591
[exp]
53 / 4e-07 AT4G11740 449 / 9e-153 Ubiquitin-like superfamily protein (.1)
Lus10006321
[exp]
52 / 8e-07 AT4G11740 433 / 7e-146 Ubiquitin-like superfamily protein (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0072 Ubiquitin PF00789 UBX UBX domain
Representative CDS sequence
>Potri.017G036600.1 pacid=42813724 polypeptide=Potri.017G036600.1.p locus=Potri.017G036600 ID=Potri.017G036600.1.v4.1 annot-version=v4.1
ATGGAGAGTTCAATATCTGCAGTTACCTATAAAGGTTCAATACCTGAAGCAATTCTTGAATCCAAAAAACAGAAGAAACTTTTTGTTGTTTACATTTCAG
GTGAAAATGTGGAGTCCGCTGAATTGGAAAAATCCACTTGGGCTGATTCTAAAGTGGTGGAGTCGCTCTCAAAGCACTGCATTTTATTGCATATCAAAGA
AGGAAGCACTGATGCCATGAATTTGTCTGCAATATACCCACAGAAATCTGCTCCTTGTATAACAGCCATTGGCTACAATGGGGTTCAACTTTGGCAGAGT
GAAGGGTTTGTTAGTGCTGAAGTTTTGGCTTCTGGTTTAGAGAAGGCAAGGTCGAGCCTTCATATCCAGGAAACAACAGCAACTGTCCTGACTGCAGCAC
TTGCTTTGAAGAGATCTGAACCACCTTCTTCTGGGTCGTCTGATATTGGTTCCACCGGGCAAGGAAGTTCTTCAGGTACGGTTGTCTCACTGCCTTTGGT
GGACAGCCATGCCCAACCTTCAGAGCTTGAAACACAGGCTGCTTCTGAGTTGATAGAAGAAAAGGCGAGTCATGAACAACCTACAGCTGAGGAAACAATA
ACCAATTTGGATGACAAGACATCTACAAAATCTTTTAATGTTCAGAAGTCGCAGACTAGTGGGGATGAGCGGTCCACATGTCCCCCTGACGAAGACAATA
AATTACCCAGTTCAATAACCAAATCAGACCATACCATAGCTGATCATATATTTTCTGGTGCTGAAGATGGTCTTCTTGCCCAAGAAAAGATTATTGGTAA
TCATTCAGGTGCTACTACTGAGATAAAAGAAGCAGGAAGAGATAAAAAGGCTGAATCTACGGATGGTTTGGGGCCTGGGACATTAGATGATAAAAAAACA
GTTACTGTATTGAGTGATGTTCATTTAAATATCCGTCTGCCGGATGGTGTTAGCTTACAGGAGAAGTTTTCTGTGACAAGCACTTTGAGAATGGTCAAAG
ACTACGTGGACAGAAACCAAGCTGGTGGTATTGGTGCATATGATCTTGCCATTCCTTATCCTCGCAAGACATTCAGTGATCAAGATTTGAGTAAATCATT
ATCAGAGTTGGCTCTGCTTAATAGACAAGCATTGATGGTGGTTCCTCATCAGCGAGCCACAAGTTACCACAGAGGAGGTTCTTCCTCGGACAGAGCAACT
ACTACAACTAGCAGTGGTTCAGCAAATGCAAATGATGGGGGATATTTTGCATATGTCAAAAGGGTTCTATCTTATGTCAATCCTCTCTCCTACTTTGGTG
GTAGTGCAAGCTCATCAAGTTCTGGACAAGCTCAATCTGGCATATGGGAATATAGTCCAAATTCAACACCTCAGAATAACAATGCAAGAACAGACCGACC
TTACTCCAGTTACTCCCCAAATCAAAACGCTTCAGCAACTGGCAGAAATGACAGCCAAGGCAGGCCAACGACAACATCACGCATTGGGAGCAACATTCAC
ACACTGAAACATGATGGTGATGATGGCCGATTCAACGATAGAAATTCCTTCTGGAATGGAAATTCAACCGAGTATGGTGGGAACAATGATGATAAATAG
AA sequence
>Potri.017G036600.1 pacid=42813724 polypeptide=Potri.017G036600.1.p locus=Potri.017G036600 ID=Potri.017G036600.1.v4.1 annot-version=v4.1
MESSISAVTYKGSIPEAILESKKQKKLFVVYISGENVESAELEKSTWADSKVVESLSKHCILLHIKEGSTDAMNLSAIYPQKSAPCITAIGYNGVQLWQS
EGFVSAEVLASGLEKARSSLHIQETTATVLTAALALKRSEPPSSGSSDIGSTGQGSSSGTVVSLPLVDSHAQPSELETQAASELIEEKASHEQPTAEETI
TNLDDKTSTKSFNVQKSQTSGDERSTCPPDEDNKLPSSITKSDHTIADHIFSGAEDGLLAQEKIIGNHSGATTEIKEAGRDKKAESTDGLGPGTLDDKKT
VTVLSDVHLNIRLPDGVSLQEKFSVTSTLRMVKDYVDRNQAGGIGAYDLAIPYPRKTFSDQDLSKSLSELALLNRQALMVVPHQRATSYHRGGSSSDRAT
TTTSSGSANANDGGYFAYVKRVLSYVNPLSYFGGSASSSSSGQAQSGIWEYSPNSTPQNNNARTDRPYSSYSPNQNASATGRNDSQGRPTTTSRIGSNIH
TLKHDGDDGRFNDRNSFWNGNSTEYGGNNDDK

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT2G43210 Ubiquitin-like superfamily pro... Potri.017G036600
[exp]
0 1
AT3G51100 unknown protein Potri.007G016200
[exp]
3.00 0.7618
AT4G09750 NAD(P)-binding Rossmann-fold s... Potri.002G063601
[exp]
3.46 0.7799
AT5G35910 Polynucleotidyl transferase, r... Potri.013G062800
[exp]
5.19 0.8172
AT1G19025 DNA repair metallo-beta-lactam... Potri.007G106700
[exp]
5.38 0.7258
AT4G14385 unknown protein Potri.002G038700
[exp]
7.54 0.7896
AT5G24500 unknown protein Potri.015G005100
[exp]
11.40 0.7470
AT1G33980 ATUPF3, UPF3 Smg-4/UPF3 family protein (.1.... Potri.004G225800
[exp]
12.00 0.7400
AT1G43860 sequence-specific DNA binding ... Potri.005G186700
[exp]
19.67 0.7116
AT2G02710 PLPC, PLPB, PLP... PAS/LOV PROTEIN C, PAS/LOV PRO... Potri.008G180700
[exp]
21.49 0.7689
AT2G43210 Ubiquitin-like superfamily pro... Potri.007G123800
[exp]
21.84 0.6937

Potri.017G036600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.