Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G32350 294 / 4e-101 Ubiquitin-like superfamily protein (.1) AT4G05050 77 / 6e-17 UBQ11 ubiquitin 11 (.1.2.3.4) AT4G02890 77 / 6e-17 UBQ14 Ubiquitin family protein (.1.2.3.4) AT4G05320 78 / 1e-16 UBQ10 polyubiquitin 10 (.1.2.3.4.5.6) AT5G03240 78 / 1e-16 UBQ3 polyubiquitin 3 (.1.2.3) AT5G20620 78 / 2e-16 UBQ4 ubiquitin 4 (.1) AT1G55060 76 / 3e-16 UBQ12 ubiquitin 12 (.1) AT4G05230 73 / 2e-15 Ubiquitin-like superfamily protein (.1) AT5G37640 74 / 3e-15 UBQ9 ubiquitin 9 (.1) AT1G65350 70 / 9e-14 UBQ13 ubiquitin 13 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G022400 [exp] 117 / 8e-32 AT4G05230 144 / 1e-42 Ubiquitin-like superfamily protein (.1) Potri.011G026600 [exp] 77 / 6e-17 AT4G05050 452 / 3e-164 ubiquitin 11 (.1.2.3.4) Potri.004G021500 [exp] 78 / 1e-16 AT4G02890 604 / 0.0 Ubiquitin family protein (.1.2.3.4) Potri.017G135600 [exp] 77 / 1e-16 AT4G02890 597 / 0.0 Ubiquitin family protein (.1.2.3.4) Potri.007G123300 [exp] 78 / 2e-16 AT4G05320 753 / 0.0 polyubiquitin 10 (.1.2.3.4.5.6) Potri.001G263000 [exp] 78 / 2e-16 AT4G05320 752 / 0.0 polyubiquitin 10 (.1.2.3.4.5.6) Potri.001G418500 [exp] 78 / 2e-16 AT4G05320 753 / 0.0 polyubiquitin 10 (.1.2.3.4.5.6) Potri.017G036800 [exp] 78 / 2e-16 AT4G05320 753 / 0.0 polyubiquitin 10 (.1.2.3.4.5.6) Potri.011G134200 [exp] 77 / 4e-16 AT4G05320 900 / 0.0 polyubiquitin 10 (.1.2.3.4.5.6)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039679 [exp] 246 / 8e-82 AT2G32350 239 / 1e-79 Ubiquitin-like superfamily protein (.1) Lus10007641 [exp] 113 / 6e-30 AT4G05230 145 / 1e-42 Ubiquitin-like superfamily protein (.1) Lus10018367 [exp] 77 / 7e-17 AT4G05320 452 / 4e-164 polyubiquitin 10 (.1.2.3.4.5.6) Lus10018369 [exp] 62 / 4e-12 AT4G05230 143 / 5e-44 Ubiquitin-like superfamily protein (.1) Lus10008873 [exp] 46 / 3e-06 AT3G52590 261 / 5e-92 HAPLESS 4, EARLY-RESPONSIVE TO DEHYDRATION 16, EMBRYO DEFECTIVE 2167, ubiquitin extension protein 1 (.1) Lus10030894 [exp] 45 / 1e-05 AT2G47110 257 / 3e-89 ubiquitin 6 (.1.2) Lus10030595 [exp] 45 / 1e-05 AT2G47110 257 / 3e-89 ubiquitin 6 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0072 [poplar] [flax] Ubiquitin PF00240 [poplar] [flax] ubiquitin Ubiquitin family
Representative CDS sequence Show only first row Show all	>Potri.017G037600.1 pacid=42813359 polypeptide=Potri.017G037600.1.p locus=Potri.017G037600 ID=Potri.017G037600.1.v4.1 annot-version=v4.1 ATGAAGGTCATTATTGTTGCTGGGGCACGGGAATTTCTCTTAGAAATTGGCTTACAAGATCCTGTTCTTGATATCAAAAGAAGGATTCAACAACTCGTGG GTGTGCCTGTGACTGCACAAATTCTTGCTGTATCAGGTTGGGAGTTGGTTGATGGACTAGACATGGAAGACTATCCCATTGTCATTGATGGCACAAGAAT TGAACTCACCATCAAACCAATGATGCCAGCATTTAGCAGCTACTGTGGTATGATTCAAATCATAGTGAAATTTTCAGCAAGACAGATTAATATAGAGGTT GACAGAACAGATACGGTGCGTAGCCTGAAGGAAAAAATCCACATTTTTGATGGCACGCCAATCAAAAGGATGTCTCTTTTCTTTTCTGGGGTGGAGCTTG ATGAAGATTTTCGCAACCTCAGCGAGTATGGAATACATGAATTCTCTGAGATTGTTGTGTTCCTCAAAACCATGACTCGAATAAGGGATGATCCTCCCTC AAGAAAGCTAAGTATAGTGGTGCAAACTTCATCTTGTTTGCTCAATGCAGCATGCATTCCTTTGGAAATGAAAGACTCAAGCACTGTTAATGACATGAGG CAACTTCTTTTGAGCAGAAAAATCCTCCCTCAAGACGATTATTTGTTTATACACAAGCAAAGGATCATGCGTGACAGTTGTAGCCTCAGGTGGCATGGTG TTGATAATGGTGATTCCCTTTATGTGTTCAAGGGAACAGTAAGTCGTAGTTGA
AA sequence Show only first row Show all	>Potri.017G037600.1 pacid=42813359 polypeptide=Potri.017G037600.1.p locus=Potri.017G037600 ID=Potri.017G037600.1.v4.1 annot-version=v4.1 MKVIIVAGAREFLLEIGLQDPVLDIKRRIQQLVGVPVTAQILAVSGWELVDGLDMEDYPIVIDGTRIELTIKPMMPAFSSYCGMIQIIVKFSARQINIEV DRTDTVRSLKEKIHIFDGTPIKRMSLFFSGVELDEDFRNLSEYGIHEFSEIVVFLKTMTRIRDDPPSRKLSIVVQTSSCLLNAACIPLEMKDSSTVNDMR QLLLSRKILPQDDYLFIHKQRIMRDSCSLRWHGVDNGDSLYVFKGTVSRS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G32350			Ubiquitin-like superfamily pro...		Potri.017G037600 [exp]	0	1
AT2G41905			unknown protein		Potri.009G063600 [exp]	12.96	0.6692
AT3G60130		BGLU16	beta glucosidase 16 (.1.2.3)		Potri.001G226200 [exp]	19.28	0.7056	Pt-PLIN-GEN.19
AT5G24550		BGLU32	beta glucosidase 32 (.1)		Potri.001G225812 [exp]	19.79	0.6974
					Potri.005G023301 [exp]	28.56	0.6928
AT5G07900			Mitochondrial transcription te...		Potri.009G021701 [exp]	47.53	0.6469
					Potri.019G002502 [exp]	59.24	0.6588
AT5G07610			F-box family protein (.1)		Potri.018G132800 [exp]	61.16	0.6177
AT5G50770		ATHSD6	hydroxysteroid dehydrogenase 6...		Potri.015G100102 [exp]	61.77	0.6522
					Potri.014G003551 [exp]	61.82	0.6236
					Potri.008G068601 [exp]	63.85	0.6324

Compare expression of checked genes

Potri.017G037600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.