Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G05260 479 / 7e-172 RCI3A, RCI3 RARE COLD INDUCIBLE GENE 3, Peroxidase superfamily protein (.1) AT4G11290 471 / 3e-168 Peroxidase superfamily protein (.1) AT3G21770 436 / 1e-154 Peroxidase superfamily protein (.1) AT5G15180 348 / 6e-120 Peroxidase superfamily protein (.1) AT3G01190 335 / 7e-115 Peroxidase superfamily protein (.1) AT1G05240 308 / 2e-104 Peroxidase superfamily protein (.1) AT1G05250 308 / 2e-104 Peroxidase superfamily protein (.1) AT2G39040 291 / 3e-97 Peroxidase superfamily protein (.1) AT2G18150 283 / 3e-94 Peroxidase superfamily protein (.1) AT5G64120 279 / 7e-93 Peroxidase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G122100 [exp] 540 / 0 AT1G05260 496 / 3e-178 RARE COLD INDUCIBLE GENE 3, Peroxidase superfamily protein (.1) Potri.017G037900 [exp] 527 / 0 AT1G05260 481 / 2e-172 RARE COLD INDUCIBLE GENE 3, Peroxidase superfamily protein (.1) Potri.011G027300 [exp] 356 / 3e-123 AT3G01190 407 / 2e-143 Peroxidase superfamily protein (.1) Potri.019G063201 [exp] 354 / 3e-122 AT3G01190 412 / 4e-145 Peroxidase superfamily protein (.1) Potri.004G023200 [exp] 352 / 1e-121 AT3G01190 404 / 5e-142 Peroxidase superfamily protein (.1) Potri.007G122451 [exp] 352 / 2e-121 AT5G15180 374 / 3e-130 Peroxidase superfamily protein (.1) Potri.007G122200 [exp] 350 / 6e-121 AT5G15180 395 / 2e-138 Peroxidase superfamily protein (.1) Potri.007G122351 [exp] 350 / 9e-121 AT5G15180 396 / 9e-139 Peroxidase superfamily protein (.1) Potri.007G122401 [exp] 350 / 9e-121 AT5G15180 396 / 9e-139 Peroxidase superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027163 [exp] 514 / 0 AT4G11290 491 / 4e-176 Peroxidase superfamily protein (.1) Lus10039681 [exp] 509 / 0 AT4G11290 488 / 3e-175 Peroxidase superfamily protein (.1) Lus10027164 [exp] 446 / 2e-158 AT1G05260 463 / 3e-165 RARE COLD INDUCIBLE GENE 3, Peroxidase superfamily protein (.1) Lus10015127 [exp] 445 / 3e-158 AT1G05260 444 / 7e-158 RARE COLD INDUCIBLE GENE 3, Peroxidase superfamily protein (.1) Lus10031548 [exp] 445 / 4e-158 AT1G05260 441 / 1e-156 RARE COLD INDUCIBLE GENE 3, Peroxidase superfamily protein (.1) Lus10039680 [exp] 438 / 2e-155 AT1G05260 458 / 3e-163 RARE COLD INDUCIBLE GENE 3, Peroxidase superfamily protein (.1) Lus10018374 [exp] 353 / 6e-122 AT3G01190 414 / 4e-146 Peroxidase superfamily protein (.1) Lus10007638 [exp] 342 / 1e-117 AT3G01190 407 / 4e-143 Peroxidase superfamily protein (.1) Lus10006756 [exp] 335 / 6e-115 AT3G01190 379 / 3e-132 Peroxidase superfamily protein (.1) Lus10004163 [exp] 282 / 4e-94 AT5G06720 446 / 1e-158 peroxidase 2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0617 [poplar] [flax] Peroxidase PF00141 [poplar] [flax] peroxidase Peroxidase
Representative CDS sequence Show only first row Show all	>Potri.017G038100.1 pacid=42813136 polypeptide=Potri.017G038100.1.p locus=Potri.017G038100 ID=Potri.017G038100.1.v4.1 annot-version=v4.1 ATGGGAAGGATTGGGTATTTCGGGATGCTAATCTTTGGTCTTTTAGCATTTATGGGCTCAACCGAAGCTCAACTAAAGATGGGTTTTTATAATACAAGCT GCCCGAAAGCTGAGAAGATTGTGCAAGGCTTTGTAAACCAGCACATCCACAACGCTCCATCATTGGCTGCAACCTTAATCAGAATGCATTTCCATGATTG CTTCGTCAGGGGTTGCGATGCATCTGTGCTGTTGAACACAACTTCCGGCGAACAACCTGAAAAGGCAGCAACTCCAAATCTTACACTCAGAGGCTTTGAC TTCATCGACAGAGTGAAACGCCTAGTTGAAGCTGAATGTCCTGGAATTGTGTCTTGTGCTGATATCCTCACCTTGGTCGCTAGGGACAGTATAGTAGCCA CAGGAGGTCCATTCTGGAGAGTTCCGACTGGCCGGCGAGACGGTTTGATCTCCAGGTCCTCAGAGGCCTTGTCCAACGTCCCATCTCCCATGATCAACTT CACCACTCTACAAACACTGTTTGCTAACCAAGGTCTTGATTTGAAAGACCTGGTCTTGCTTTCTGGTGCTCATACCATTGGCATTGCTCATTGTCAATCG TTTTCGAACCGGCTATACAATTTCACTGGGACTGGAGATGAAGACCCAGCTCTAGATAGCGAATATGCTGCGAATTTGAAGGCTAGAAAGTGCAGAAGTA TTAGCGATAACACTACTATAGTTGAGATGGACCCTGGAAGCAGAAAGACATTTGATCTTAGCTACTATAAACTCTTGCTGAAGAGAAGAGGTCTATTTCA ATCAGATGCTGCCTTGACCACAAACTCTAATACATTGTCTATGATCCGCCAAATACTACAGGGTTCAATAGATTTCCGTTCTGAATTTTCCAAATCCATG GAGAAAATGGGCAGAATTCGTGTTAAAACTGGCTCGAATGGCGAGATTAGAAGGCAATGTGCTTTGGTTAATAGCTAA
AA sequence Show only first row Show all	>Potri.017G038100.1 pacid=42813136 polypeptide=Potri.017G038100.1.p locus=Potri.017G038100 ID=Potri.017G038100.1.v4.1 annot-version=v4.1 MGRIGYFGMLIFGLLAFMGSTEAQLKMGFYNTSCPKAEKIVQGFVNQHIHNAPSLAATLIRMHFHDCFVRGCDASVLLNTTSGEQPEKAATPNLTLRGFD FIDRVKRLVEAECPGIVSCADILTLVARDSIVATGGPFWRVPTGRRDGLISRSSEALSNVPSPMINFTTLQTLFANQGLDLKDLVLLSGAHTIGIAHCQS FSNRLYNFTGTGDEDPALDSEYAANLKARKCRSISDNTTIVEMDPGSRKTFDLSYYKLLLKRRGLFQSDAALTTNSNTLSMIRQILQGSIDFRSEFSKSM EKMGRIRVKTGSNGEIRRQCALVNS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G05260		RCI3A, RCI3	RARE COLD INDUCIBLE GENE 3, Pe...		Potri.017G038100 [exp]	0	1
AT2G41850		ADPG2, PGAZAT	ARABIDOPSIS DEHISCENCE ZONE PO...		Potri.016G054800 [exp]	1.00	0.9173	PG.2
AT1G23210		ATGH9B6	glycosyl hydrolase 9B6 (.1)		Potri.015G127900 [exp]	1.41	0.9150
AT4G30380		EXLB2	Barwin-related endoglucanase (...		Potri.018G031901 [exp]	2.82	0.8949
AT2G44260			Plant protein of unknown funct...		Potri.001G232500 [exp]	3.46	0.9017
AT2G16050			Cysteine/Histidine-rich C1 dom...		Potri.010G204600 [exp]	6.48	0.8822
AT2G44260			Plant protein of unknown funct...		Potri.009G025102 [exp]	6.70	0.8698
AT2G16230			O-Glycosyl hydrolases family 1...		Potri.014G182000 [exp]	10.39	0.8537
AT2G16230			O-Glycosyl hydrolases family 1...		Potri.014G182321 [exp]	10.81	0.8499
AT2G27480			Calcium-binding EF-hand family...		Potri.004G202200 [exp]	10.90	0.8275
AT3G54700		PHT1;7	phosphate transporter 1;7 (.1)		Potri.005G175700 [exp]	10.95	0.7431

Compare expression of checked genes

Potri.017G038100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.