Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G26400 69 / 1e-13 RING/U-box superfamily protein (.1.2) AT1G55530 65 / 2e-12 RING/U-box superfamily protein (.1) AT5G56340 65 / 2e-12 ATCRT1 RING/U-box superfamily protein (.1) AT3G13430 64 / 3e-12 RING/U-box superfamily protein (.1.2.3) AT5G59550 62 / 3e-11 zinc finger (C3HC4-type RING finger) family protein (.1) AT1G60360 61 / 7e-11 RING/U-box superfamily protein (.1) AT3G19950 61 / 7e-11 RING/U-box superfamily protein (.1) AT1G14200 59 / 7e-11 RING/U-box superfamily protein (.1) AT2G40830 60 / 1e-10 RHC1A RING-H2 finger C1A (.1.2.3) AT2G44330 58 / 1e-10 RING/U-box superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G102800 [exp] 211 / 2e-69 AT3G13430 69 / 9e-14 RING/U-box superfamily protein (.1.2.3) Potri.001G103900 [exp] 63 / 3e-12 AT4G26400 85 / 2e-19 RING/U-box superfamily protein (.1.2) Potri.007G118000 [exp] 62 / 8e-12 AT1G18760 81 / 1e-18 Zinc finger, C3HC4 type (RING finger) family protein (.1) Potri.005G062400 [exp] 62 / 1e-11 AT1G60360 82 / 3e-18 RING/U-box superfamily protein (.1) Potri.002G083001 [exp] 61 / 2e-11 AT1G18760 81 / 1e-18 Zinc finger, C3HC4 type (RING finger) family protein (.1) Potri.003G223200 [exp] 62 / 3e-11 AT5G56340 301 / 3e-99 RING/U-box superfamily protein (.1) Potri.001G001500 [exp] 62 / 3e-11 AT5G56340 323 / 2e-108 RING/U-box superfamily protein (.1) Potri.007G107000 [exp] 61 / 3e-11 AT1G18760 79 / 7e-18 Zinc finger, C3HC4 type (RING finger) family protein (.1) Potri.010G168300 [exp] 61 / 4e-11 AT1G26800 195 / 4e-63 RING/U-box superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013397 [exp] 63 / 1e-11 AT5G56340 330 / 5e-111 RING/U-box superfamily protein (.1) Lus10010179 [exp] 62 / 2e-11 AT3G19950 285 / 6e-96 RING/U-box superfamily protein (.1) Lus10030755 [exp] 62 / 3e-11 AT2G40830 336 / 2e-115 RING-H2 finger C1A (.1.2.3) Lus10013235 [exp] 62 / 3e-11 AT2G40830 334 / 7e-115 RING-H2 finger C1A (.1.2.3) Lus10020258 [exp] 60 / 2e-10 AT1G19800 469 / 4e-161 ATP-binding cassette I14, trigalactosyldiacylglycerol 1 (.1.2.3) Lus10040783 [exp] 59 / 2e-10 AT5G59550 228 / 1e-72 zinc finger (C3HC4-type RING finger) family protein (.1) Lus10025671 [exp] 59 / 2e-10 AT3G13228 74 / 4e-15 RING/U-box superfamily protein (.1) Lus10002637 [exp] 59 / 3e-10 AT1G55530 257 / 4e-82 RING/U-box superfamily protein (.1) Lus10025612 [exp] 58 / 5e-10 AT1G60360 234 / 7e-75 RING/U-box superfamily protein (.1) Lus10017383 [exp] 55 / 5e-10 AT3G19950 127 / 8e-37 RING/U-box superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0229 [poplar] [flax] RING PF13639 [poplar] [flax] zf-RING_2 Ring finger domain
Representative CDS sequence Show only first row Show all	>Potri.017G038300.1 pacid=42814082 polypeptide=Potri.017G038300.1.p locus=Potri.017G038300 ID=Potri.017G038300.1.v4.1 annot-version=v4.1 ATGGAGCCATCGTCATCTTCTGTCTATTCAACTCAGTTTCTTGCCAAAAAGGTTACTGTAGAGTTCATTATTGTCAAGGAATCGCAAGTTGGCTTACAGG TTAGTAGACAACAATTCCTGTTGAGACTGTGGGAGTTGGTGTTGAGAAATCATAGATACAAGCAAATGTTTACCAACACAGACATCAGTTTATCTTCAGC CATGAAAGCTACTCTGCCCTTCGCCATCTCTGATCAGGCTCGTAAACTCCACGGTGAAATTGACCACATATTTGTCTGCGTTCTGCACCCGAGGTTCAAT ATCATGACTGGCATTCATGTTGATGAGGATAAGGCGGTCTCGTGGGATGTTGTCGAAAACCCTGAAAATCCTGTATTACCAGCTTGCAAGCCACCGATCC CATGCTTGAAGAAAGTAAAGATTGAGCAACAAACTCCGGGTTCCATGAATGAAGAGTTATGCTGTGCAATTTGCTTGCAAGATTTTCCTGATGGGTCTGA AGCTGCTACTACTAGATGCTCTCACCTGTTTCATTGCCATTGCATTGTCAAGTGGCTATCCAAGAGTACTTCTTGCCCTATGTGTCGCACTAAGCTGCCA GTTGGTTGA
AA sequence Show only first row Show all	>Potri.017G038300.1 pacid=42814082 polypeptide=Potri.017G038300.1.p locus=Potri.017G038300 ID=Potri.017G038300.1.v4.1 annot-version=v4.1 MEPSSSSVYSTQFLAKKVTVEFIIVKESQVGLQVSRQQFLLRLWELVLRNHRYKQMFTNTDISLSSAMKATLPFAISDQARKLHGEIDHIFVCVLHPRFN IMTGIHVDEDKAVSWDVVENPENPVLPACKPPIPCLKKVKIEQQTPGSMNEELCCAICLQDFPDGSEAATTRCSHLFHCHCIVKWLSKSTSCPMCRTKLP VG

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G26400			RING/U-box superfamily protein...		Potri.017G038300 [exp]	0	1
AT4G25315			Expressed protein (.1.2)		Potri.004G189300 [exp]	1.41	0.8605
AT4G17180			O-Glycosyl hydrolases family 1...		Potri.006G002100 [exp]	2.82	0.8264
AT5G04520			Protein of unknown function DU...		Potri.010G233000 [exp]	3.00	0.8325
AT3G19508			unknown protein		Potri.009G094200 [exp]	5.47	0.8142
AT2G32060			Ribosomal protein L7Ae/L30e/S1...		Potri.003G181200 [exp]	8.36	0.7783
AT2G06010		ORG4	OBP3-responsive gene 4 (.1)		Potri.018G065800 [exp]	8.71	0.7488	ORG4.2
AT5G07900			Mitochondrial transcription te...		Potri.004G012400 [exp]	10.00	0.7460
AT3G62810			complex 1 family protein / LVR...		Potri.014G129800 [exp]	10.19	0.7871
AT5G35530			Ribosomal protein S3 family pr...		Potri.012G076800 [exp]	12.00	0.7861
AT2G45440		DHDPS2	dihydrodipicolinate synthase (...		Potri.002G149500 [exp]	12.48	0.7690	Pt-DHDPS2.1

Compare expression of checked genes

Potri.017G038300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.