Plant FIBer expression Database

Potri.017G038500 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G05270 417 / 4e-146 TraB family protein (.1)
AT2G32340 384 / 2e-133 TraB family protein (.1)
AT5G52030 84 / 6e-18 TraB family protein (.1.2)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.007G121900
[exp]
593 / 0 AT1G05270 404 / 7e-140 TraB family protein (.1)
Potri.007G121800
[exp]
404 / 5e-141 AT1G05270 323 / 6e-109 TraB family protein (.1)
Potri.012G133900
[exp]
102 / 3e-24 AT5G52030 426 / 7e-149 TraB family protein (.1.2)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10015104
[exp]
439 / 3e-155 AT1G05270 447 / 4e-158 TraB family protein (.1)
Lus10031571
[exp]
360 / 1e-124 AT1G05270 368 / 3e-127 TraB family protein (.1)
Lus10038420
[exp]
353 / 3e-120 AT1G05270 371 / 6e-127 TraB family protein (.1)
Lus10023387
[exp]
270 / 2e-86 AT3G16780 343 / 1e-116 Ribosomal protein L19e family protein (.1)
Lus10015005
[exp]
96 / 2e-21 AT5G52030 461 / 5e-156 TraB family protein (.1.2)
Lus10038884
[exp]
94 / 3e-21 AT5G52030 458 / 3e-161 TraB family protein (.1.2)
Lus10038419
[exp]
61 / 2e-10 AT1G05270 68 / 3e-13 TraB family protein (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0572 TIKI PF01963 TraB TraB family
Representative CDS sequence
>Potri.017G038500.1 pacid=42814244 polypeptide=Potri.017G038500.1.p locus=Potri.017G038500 ID=Potri.017G038500.1.v4.1 annot-version=v4.1
ATGGATCCGAACCCTTCTAATGAGGAATTTGTTCACATCGAGAACCCTAGCGATAATGATAATCATTTAAGCGAAAGCATAGTTGACGTTGCTAATGAGC
TTAGCGAAGATGATAATAAAAACGACGACGTGGTGGAGAGGAAGGAGCTCCCAGAGGAACTTTCTAGAAGCGTGATGGTCCTCACGTGCGAGTCGAAAGC
TGAAGGTGGCACGTGTGTCGTGCATTTAGTTGGTACTGCTCATGTTTGTCAGGAATCATGCAGGGAAGTACAAGCTGTAATCAGTTACTTGAAACCGCAG
GTTGTATTTCTGGAATTATGTGCGAGTAGAGTGGCTATGCTTTCTCCTCAGAATTTAAAGGTGCCAACAATGGGGGAAATGATAAAGATGTGGAAGAAAA
ATCATAACACCTTTGGAATTCTTTATAGCTGGTTTCTTGCCAAGGTTGCTGATAAGCTTGAAGTTTTTCCTGGTTCTGAGTTCCGGGTAGCATTTGAAGA
AGCAAGAAAGTACGAGGGCAAGGTAGTGCTTGGTGATCGTCCTGTACAGATTACATTACGGAGGACATGGGGTAAAATGCCAGTTTGGCATAAAGTAAAA
TTTCTGTACTCGTTACTTTTTCAAGCATTATTTTTACCAAGCTCTGAGGATCTTGAGAAAATGCTAAAAGAAATGGATGATGTTGACATGCTGACTCTAG
TCATTCAAGAAATGAGCAAGCAGTTCCCCACTCTTATGGAAACCCTGGTGCAAGAGCGAGACCAGTACATGTCATCAACCCTTCTAAGAATTGCGAAAGA
ACATAATTCAGTCGTTGCAGTTGTTGGAAAGGGGCATTTGCAAGGGATTAAGAGGCATTGGGAGCAGCACATTGAGTTGAAGGATCTTATGGAACTTCCT
TCACAGAAATCAGCTGTTTCAGCTTGGAAGGTTCTTGCATCGCTAGGTGTTGCAGTTGCTGGTGTGGCTATTGTTTCAGGCATTTATCTTTCACGCAAGA
AATAG
AA sequence
>Potri.017G038500.1 pacid=42814244 polypeptide=Potri.017G038500.1.p locus=Potri.017G038500 ID=Potri.017G038500.1.v4.1 annot-version=v4.1
MDPNPSNEEFVHIENPSDNDNHLSESIVDVANELSEDDNKNDDVVERKELPEELSRSVMVLTCESKAEGGTCVVHLVGTAHVCQESCREVQAVISYLKPQ
VVFLELCASRVAMLSPQNLKVPTMGEMIKMWKKNHNTFGILYSWFLAKVADKLEVFPGSEFRVAFEEARKYEGKVVLGDRPVQITLRRTWGKMPVWHKVK
FLYSLLFQALFLPSSEDLEKMLKEMDDVDMLTLVIQEMSKQFPTLMETLVQERDQYMSSTLLRIAKEHNSVVAVVGKGHLQGIKRHWEQHIELKDLMELP
SQKSAVSAWKVLASLGVAVAGVAIVSGIYLSRKK

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT1G05270 TraB family protein (.1) Potri.017G038500
[exp]
0 1
AT5G22950 VPS24.1 SNF7 family protein (.1) Potri.008G034700
[exp]
1.41 0.7384
AT3G12100 Cation efflux family protein (... Potri.016G045200
[exp]
2.64 0.6845
AT5G15470 GAUT14 galacturonosyltransferase 14 (... Potri.017G090800
[exp]
4.89 0.6753
AT5G57580 Calmodulin-binding protein (.1... Potri.005G020200
[exp]
6.70 0.7205 CBP60.7
AT1G08370 DCP1, ATDCP1 decapping 1 (.1) Potri.006G208600
[exp]
9.48 0.6044
AT5G38700 unknown protein Potri.014G123400
[exp]
11.31 0.7108
AT1G20650 ASG5 ALTERED SEED GERMINATION 5, Pr... Potri.005G252000
[exp]
12.24 0.6910
AT2G18630 Protein of unknown function (D... Potri.005G127401
[exp]
13.07 0.6726
AT4G27690 VPS26B vacuolar protein sorting 26B (... Potri.006G081300
[exp]
14.76 0.7213
AT4G24570 DIC2 dicarboxylate carrier 2 (.1) Potri.017G047800
[exp]
22.69 0.6986

Potri.017G038500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.