Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	SDG943
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G21820 644 / 0 SDG36, ATXR2 SET DOMAIN PROTEIN 36, histone-lysine N-methyltransferase ATXR2 (.1) AT5G06620 57 / 1e-08 SDG38, ATXR4 SET domain protein 38 (.1) AT2G19640 54 / 8e-08 SDG39, ASHR2 SET DOMAIN PROTEIN 39, ASH1-related 2, ASH1-related protein 2 (.1.2) AT1G26760 52 / 6e-07 SDG35, ATXR1 SET domain protein 35 (.1) AT2G17900 49 / 5e-06 ASHR1, SDG37 ASH1-related 1, SET domain group 37 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G196566 [exp] 56 / 6e-09 AT5G06620 229 / 2e-75 SET domain protein 38 (.1) Potri.005G173100 [exp] 53 / 3e-07 AT2G17900 657 / 0.0 ASH1-related 1, SET domain group 37 (.1) Potri.008G089500 [exp] 51 / 1e-06 AT1G26760 646 / 0.0 SET domain protein 35 (.1) Potri.001G071700 [exp] 48 / 1e-05 AT2G19640 416 / 2e-144 SET DOMAIN PROTEIN 39, ASH1-related 2, ASH1-related protein 2 (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015102 [exp] 627 / 0 AT3G21820 613 / 0.0 SET DOMAIN PROTEIN 36, histone-lysine N-methyltransferase ATXR2 (.1) Lus10031573 [exp] 612 / 0 AT3G21820 603 / 0.0 SET DOMAIN PROTEIN 36, histone-lysine N-methyltransferase ATXR2 (.1) Lus10029712 [exp] 54 / 1e-07 AT2G17900 615 / 0.0 ASH1-related 1, SET domain group 37 (.1) Lus10037155 [exp] 53 / 3e-07 AT1G26760 573 / 0.0 SET domain protein 35 (.1) Lus10013535 [exp] 52 / 5e-07 AT5G06620 367 / 2e-127 SET domain protein 38 (.1) Lus10026687 [exp] 49 / 5e-06 AT2G19640 400 / 3e-138 SET DOMAIN PROTEIN 39, ASH1-related 2, ASH1-related protein 2 (.1.2) Lus10004628 [exp] 48 / 1e-05 AT2G19640 399 / 4e-138 SET DOMAIN PROTEIN 39, ASH1-related 2, ASH1-related protein 2 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00856 [poplar] [flax] SET SET domain CL0175 [poplar] [flax] TRASH PF01753 [poplar] [flax] zf-MYND MYND finger
Representative CDS sequence Show only first row Show all	>Potri.017G038700.1 pacid=42814002 polypeptide=Potri.017G038700.1.p locus=Potri.017G038700 ID=Potri.017G038700.1.v4.1 annot-version=v4.1 ATGGAAACAAAGTGTCCAGTAGATGCAAAGTGCGCAGCTGAAATATCTGCCATGCTCACCCCTCCTTCTCCTCTTCAACTCCAGGAGTATTTCGAGGAGA TTATATCTGAAAGGAAATGCCATGGCATTGAAGTCAAACAAGATGGAAACTTGAGCAAAGGGGTTTATGCAACTATGGAACTTAAAGAAGGAGAACTTAT ACTGAAGGACAAGATACTTGTGGGTTTACAGCATGTTCCAAATAAGCTTGACTGTCTGGTGTGTGGCTATTGTTTCCAATTTATTGAGTCAGTTGAATAT CAGATTGGGAGGAAACTTTATTTGCAAAGTCTAGGCGTGCCCAGCTGCAATGGATGTGATGAGGGGGAATGTAGTTCCAGCAGCTCATACAATAAAGCTT GTTTGCCTGAAGGAGTTATAGAAGCATTAATGAATGGTGAATTGGTATTGCCTTACTCTGACAAATTTCCCTTGCCTTCAACTGTTCCTTGTCCTGGGGG GTGTCAAGAAGCTTATTATTGCAGCAAATCTTGTGCGCAGACTGATTGGGAATCTTCACATTCTTTACTTTGCACCGGGGAGAGGTCAGAATCATTATCT ATAGAGGCACTTTCAAAATTTATACAGCATGCTACTGAAACAAATGATATTTTCCTCCTAGCAGCCAAGACAATTTCTTTCACCATTTTAAGGTATAGGA AGCTGAAAGCAGCTAATGCAGATCGTTCTGAACTTTCCTTACTTTTGGAGGCATGGAAGCCAATATCAATGGGATACAAGAGAAGGTGGTGGGAGTGCAT TTCATTTCCAGATGATGTTGATCGTTCTGATGACACTGCATTTAGGATGCAAATACAGCAGCTTGCATTCAAGTCACTGCAGCTTCTCAAGGCTGCCATA TTTGATGAGGAATGCGAGCCATTATTCTCCCTTGAAATCTATGGGAATATTATTGGCATGTTTGAGCTGAATAATCTTGATCTGGTCGTAGCATCTCCAG TTGAGGATTATTTTCTGTACATTGATGATCTTCCAGATCCTGAAAAGGAAAAGGCCGAAAAAATTGCACGGCAACTTCTAGATGCTCTTGGAGATGACTA TTCAATTTGTTGCCAAGGTACTGCGTTCTATCCTTTACAGAGCTGCATGAATCACTCCTGCTGCCCAAATGCACACGCCTTCAAAAGAGATGAGGACAGA GATGGCCAGGCAGCAATCATCACCCTGAAACCAATTCGAAAGGGAGAAGAGGTTACCGTTTCATACATAGACGAGGACCTTCCATTTGAAGACAGACAGG CATTGCTAGCAGATTATGGATTCAAATGCAGGTGCAACGCTTGCTTAGAGCAAGACCCCAACAAAAAGTAG
AA sequence Show only first row Show all	>Potri.017G038700.1 pacid=42814002 polypeptide=Potri.017G038700.1.p locus=Potri.017G038700 ID=Potri.017G038700.1.v4.1 annot-version=v4.1 METKCPVDAKCAAEISAMLTPPSPLQLQEYFEEIISERKCHGIEVKQDGNLSKGVYATMELKEGELILKDKILVGLQHVPNKLDCLVCGYCFQFIESVEY QIGRKLYLQSLGVPSCNGCDEGECSSSSSYNKACLPEGVIEALMNGELVLPYSDKFPLPSTVPCPGGCQEAYYCSKSCAQTDWESSHSLLCTGERSESLS IEALSKFIQHATETNDIFLLAAKTISFTILRYRKLKAANADRSELSLLLEAWKPISMGYKRRWWECISFPDDVDRSDDTAFRMQIQQLAFKSLQLLKAAI FDEECEPLFSLEIYGNIIGMFELNNLDLVVASPVEDYFLYIDDLPDPEKEKAEKIARQLLDALGDDYSICCQGTAFYPLQSCMNHSCCPNAHAFKRDEDR DGQAAIITLKPIRKGEEVTVSYIDEDLPFEDRQALLADYGFKCRCNACLEQDPNKK

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G21820		SDG36, ATXR2	SET DOMAIN PROTEIN 36, histone...		Potri.017G038700 [exp]	0	1	SDG943
AT1G02780		EMB2386	embryo defective 2386, Ribosom...		Potri.004G078000 [exp]	2.82	0.8128	Pt-RPL19.3
AT5G08380		ATAGAL1	alpha-galactosidase 1 (.1)		Potri.010G255200 [exp]	3.00	0.7910
AT1G14980		CPN10	chaperonin 10 (.1)		Potri.009G068900 [exp]	4.47	0.8108	CPN10.2
AT4G29430		RPS15AE	ribosomal protein S15A E (.1)		Potri.009G071250 [exp]	6.70	0.7658
AT2G23090			Uncharacterised protein family...		Potri.002G120100 [exp]	9.16	0.7551
AT5G39850			Ribosomal protein S4 (.1)		Potri.006G209700 [exp]	12.40	0.7438
AT5G08170		ATAIH, EMB1873	EMBRYO DEFECTIVE 1873, AGMATIN...		Potri.015G055300 [exp]	12.64	0.7775
AT3G03990			alpha/beta-Hydrolases superfam...		Potri.002G118900 [exp]	17.74	0.7005
AT3G23940			dehydratase family (.1.2)		Potri.001G051700 [exp]	18.16	0.6846
AT1G69330			RING/U-box superfamily protein...		Potri.010G161100 [exp]	19.07	0.6955

Compare expression of checked genes

Potri.017G038700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.