Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G35730 691 / 0 EXS (ERD1/XPR1/SYG1) family protein (.1) AT2G32295 583 / 0 EXS (ERD1/XPR1/SYG1) family protein (.1) AT3G23430 106 / 3e-24 PHO1, ATPHO1 ARABIDOPSIS PHOSPHATE 1, phosphate 1 (.1) AT3G29060 104 / 2e-23 EXS (ERD1/XPR1/SYG1) family protein (.1) AT1G69480 102 / 4e-23 EXS (ERD1/XPR1/SYG1) family protein (.1) AT1G68740 102 / 9e-23 PHO1;H1 EXS (ERD1/XPR1/SYG1) family protein (.1) AT1G14040 99 / 9e-22 EXS (ERD1/XPR1/SYG1) family protein (.1) AT1G35350 97 / 4e-21 EXS (ERD1/XPR1/SYG1) family protein (.1) AT1G26730 96 / 8e-21 EXS (ERD1/XPR1/SYG1) family protein (.1) AT2G03240 92 / 2e-19 EXS (ERD1/XPR1/SYG1) family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G121400 [exp] 897 / 0 AT5G35730 694 / 0.0 EXS (ERD1/XPR1/SYG1) family protein (.1) Potri.010G069000 [exp] 100 / 3e-22 AT3G23430 1069 / 0.0 ARABIDOPSIS PHOSPHATE 1, phosphate 1 (.1) Potri.008G110800 [exp] 99 / 1e-21 AT1G68740 1096 / 0.0 EXS (ERD1/XPR1/SYG1) family protein (.1) Potri.008G169400 [exp] 97 / 4e-21 AT3G23430 1019 / 0.0 ARABIDOPSIS PHOSPHATE 1, phosphate 1 (.1) Potri.010G132300 [exp] 96 / 7e-21 AT1G68740 1139 / 0.0 EXS (ERD1/XPR1/SYG1) family protein (.1) Potri.010G164900 [exp] 92 / 2e-19 AT1G14040 992 / 0.0 EXS (ERD1/XPR1/SYG1) family protein (.1) Potri.017G086800 [exp] 91 / 5e-19 AT3G29060 853 / 0.0 EXS (ERD1/XPR1/SYG1) family protein (.1) Potri.010G165800 [exp] 90 / 7e-19 AT1G14040 1032 / 0.0 EXS (ERD1/XPR1/SYG1) family protein (.1) Potri.008G090400 [exp] 89 / 1e-18 AT1G14040 1037 / 0.0 EXS (ERD1/XPR1/SYG1) family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039696 [exp] 771 / 0 AT5G35730 689 / 0.0 EXS (ERD1/XPR1/SYG1) family protein (.1) Lus10027149 [exp] 731 / 0 AT5G35730 654 / 0.0 EXS (ERD1/XPR1/SYG1) family protein (.1) Lus10031575 [exp] 694 / 0 AT5G35730 597 / 0.0 EXS (ERD1/XPR1/SYG1) family protein (.1) Lus10019230 [exp] 106 / 2e-24 AT1G69480 676 / 0.0 EXS (ERD1/XPR1/SYG1) family protein (.1) Lus10034400 [exp] 105 / 7e-24 AT1G68740 1057 / 0.0 EXS (ERD1/XPR1/SYG1) family protein (.1) Lus10019155 [exp] 103 / 2e-23 AT1G68740 1065 / 0.0 EXS (ERD1/XPR1/SYG1) family protein (.1) Lus10004285 [exp] 101 / 2e-23 AT1G69480 467 / 4e-160 EXS (ERD1/XPR1/SYG1) family protein (.1) Lus10011799 [exp] 102 / 6e-23 AT3G23430 1080 / 0.0 ARABIDOPSIS PHOSPHATE 1, phosphate 1 (.1) Lus10021164 [exp] 101 / 1e-22 AT3G23430 1066 / 0.0 ARABIDOPSIS PHOSPHATE 1, phosphate 1 (.1) Lus10036781 [exp] 83 / 6e-17 AT1G14040 561 / 0.0 EXS (ERD1/XPR1/SYG1) family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0182 [poplar] [flax] IT PF03124 [poplar] [flax] EXS EXS family
Representative CDS sequence Show only first row Show all	>Potri.017G039000.6 pacid=42814386 polypeptide=Potri.017G039000.6.p locus=Potri.017G039000 ID=Potri.017G039000.6.v4.1 annot-version=v4.1 ATGTTTGGAGGTCAAGTGATTCCGCCTAGCAAAAGTCCGCATTTAAGGAAGTCTGGTAGCCGACCTGTCGTCTTTGATCTTGATAAGGAAGAGGGAAATG TTGAGATGGAAGGTTTGTTACATTCTACGGGGTCGAATGATTTGAAAATTGCTAGTTTACCGATTACTACTGCAGCGATAATGCCTTCTCCAATTTTGTT ATGGAGATTCAAGGTACTGTTGTTTTTTCTCTGGGGTTTTATTTGCTGCAAGATTGGATGGGATTCTGTTATGAGAATGAGTGTGAATTTGCGGGACCTT TTTCTTTACGAGGCATTTTTGTATTACAATCCTCTTCTTCTTGTGACTATGATGGTTTGGCTTTGGGGAGTTAATTTGTGGGTTTTTGCACAGTCTACCA TCAGCTATGCCAAAATTTTTGATCTGGACCAAAATCATCTTACTCACAGAGAAATATGGAAGGTTGCCACATGGATGACTATCATCGTCCCTACTAGCAT GACAGCATATCTTTATCTATATTCTCATGGAGAAGTGTCGTTGGCTGCATCACAACCAGTCTTATTATACTGTGCTGTTTCTTTGGTTTTGATATTCCCC TTTGATATTTTTTACTTGTCATCCCGCTACTACTTGCTAAGGACTCTTTGGCGGATAGTTTTCCCATTACAGGCTATTACATTTGCTGACTTCTTTGTGG CTGATATATTGACCTCCATGTCAAAGGTGTTCTCAGATCTGGAGCGTTCAGTTTGTCGAATGGTCCATCGCCAGGTTGCCACTATAGCATGGTTTGAAGC TGACTCTGTTTGCGGCAGCCACTCCATTGGGATCCCTATAGCTCTAGTTTTGCCTTACATTTTCCGATTATTTCAGTGTCTTCGACAATACAAGGATACT AAGGAGAAAACAACTCTTTTTAATGCTTTAAAATATTCGACTGCAGTACCAGTGATTTTTCTTTCAGCCCTTAAATATCATGTCCTCCTGGATAGTTGGA CAAACTTCTATAGGCCACTATGGCTTCTCTCAGGTGTCATAAACTCATTGTATTCGTTCTACTGGGATGTGACCCGGGATTGGGACTTGAGCTGTTTCAC CCGAATTTTCAAATATAACAAACCAAGTCTGTGTTCGTACCTATTACATGGACGAAAATGGGTTTATTTTTGGGTGATAGGAAGCAATTTCATTTTGCGA TTGGCATGGACATACAAGCTGTCTGCTCACCTCCGCCACAATTACCTCACAGTATTCACAATCACTGCCTTGGAGATGATTCGCCGGTTCCAGTGGGTTT TCTTCCGTGTCGAAAATGAATGGAATAAAATGAGTTCCAAGTCAAATCTTCAGCTGTCTGAGATCTCATCTGAAGAAGACAAATTACTCGCTCCCAATGA CCACAATGTATAG
AA sequence Show only first row Show all	>Potri.017G039000.6 pacid=42814386 polypeptide=Potri.017G039000.6.p locus=Potri.017G039000 ID=Potri.017G039000.6.v4.1 annot-version=v4.1 MFGGQVIPPSKSPHLRKSGSRPVVFDLDKEEGNVEMEGLLHSTGSNDLKIASLPITTAAIMPSPILLWRFKVLLFFLWGFICCKIGWDSVMRMSVNLRDL FLYEAFLYYNPLLLVTMMVWLWGVNLWVFAQSTISYAKIFDLDQNHLTHREIWKVATWMTIIVPTSMTAYLYLYSHGEVSLAASQPVLLYCAVSLVLIFP FDIFYLSSRYYLLRTLWRIVFPLQAITFADFFVADILTSMSKVFSDLERSVCRMVHRQVATIAWFEADSVCGSHSIGIPIALVLPYIFRLFQCLRQYKDT KEKTTLFNALKYSTAVPVIFLSALKYHVLLDSWTNFYRPLWLLSGVINSLYSFYWDVTRDWDLSCFTRIFKYNKPSLCSYLLHGRKWVYFWVIGSNFILR LAWTYKLSAHLRHNYLTVFTITALEMIRRFQWVFFRVENEWNKMSSKSNLQLSEISSEEDKLLAPNDHNV

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G35730			EXS (ERD1/XPR1/SYG1) family pr...		Potri.017G039000 [exp]	0	1
AT5G15050			Core-2/I-branching beta-1,6-N-...		Potri.004G130300 [exp]	2.00	0.9325
AT5G35730			EXS (ERD1/XPR1/SYG1) family pr...		Potri.007G121400 [exp]	2.44	0.9362
AT5G37310			Endomembrane protein 70 protei...		Potri.017G144181 [exp]	3.16	0.9449
AT5G18280		ATAPY2	apyrase 2 (.1.2)		Potri.019G031000 [exp]	3.31	0.9104	Pt-APY1.4
AT3G53520		ATUXS1, UXS1	UDP-glucuronic acid decarboxyl...		Potri.016G080500 [exp]	3.74	0.9215
AT4G34450			coatomer gamma-2 subunit, puta...		Potri.009G115100 [exp]	7.74	0.9128
AT5G11710			ENTH/VHS family protein (.1)		Potri.006G234100 [exp]	7.87	0.9363
AT5G54780			Ypt/Rab-GAP domain of gyp1p su...		Potri.001G419100 [exp]	8.24	0.9046
AT2G40320		TBL33	TRICHOME BIREFRINGENCE-LIKE 33...		Potri.010G184000 [exp]	8.30	0.8951
AT5G62050		ATOXA1, OXA1AT,...	HOMOLOG OF YEAST OXIDASE ASSEM...		Potri.006G073000 [exp]	8.36	0.8869

Compare expression of checked genes

Potri.017G039000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.