Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G33090 1102 / 0 ATAPM1, APM1 aminopeptidase M1 (.1) AT1G63770 87 / 3e-17 Peptidase M1 family protein (.1.2.3.4.5) AT5G13520 80 / 5e-15 peptidase M1 family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G224500 [exp] 1090 / 0 AT4G33090 1356 / 0.0 aminopeptidase M1 (.1) Potri.001G199000 [exp] 152 / 1e-43 AT4G33090 49 / 7e-08 aminopeptidase M1 (.1) Potri.001G102051 [exp] 97 / 3e-21 AT1G63770 692 / 0.0 Peptidase M1 family protein (.1.2.3.4.5) Potri.003G129500 [exp] 99 / 7e-21 AT1G63770 1594 / 0.0 Peptidase M1 family protein (.1.2.3.4.5) Potri.001G101975 [exp] 98 / 1e-20 AT1G63770 1269 / 0.0 Peptidase M1 family protein (.1.2.3.4.5) Potri.010G215700 [exp] 81 / 2e-15 AT5G13520 926 / 0.0 peptidase M1 family protein (.1) Potri.008G045900 [exp] 79 / 6e-15 AT5G13520 965 / 0.0 peptidase M1 family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026448 [exp] 1085 / 0 AT4G33090 1389 / 0.0 aminopeptidase M1 (.1) Lus10025001 [exp] 1085 / 0 AT4G33090 1385 / 0.0 aminopeptidase M1 (.1) Lus10025002 [exp] 986 / 0 AT4G33090 1196 / 0.0 aminopeptidase M1 (.1) Lus10026449 [exp] 120 / 1e-31 AT4G33090 147 / 1e-41 aminopeptidase M1 (.1) Lus10024641 [exp] 92 / 2e-18 AT1G63770 1610 / 0.0 Peptidase M1 family protein (.1.2.3.4.5) Lus10040361 [exp] 61 / 3e-09 AT5G13520 729 / 0.0 peptidase M1 family protein (.1) Lus10023479 [exp] 44 / 0.0004 AT5G13520 551 / 0.0 peptidase M1 family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0126 [poplar] [flax] Peptidase_MA PF01433 [poplar] [flax] Peptidase_M1 Peptidase family M1 domain CL0159 [poplar] [flax] E-set PF11838 [poplar] [flax] ERAP1_C ERAP1-like C-terminal domain
Representative CDS sequence Show only first row Show all	>Potri.017G039200.1 pacid=42813592 polypeptide=Potri.017G039200.1.p locus=Potri.017G039200 ID=Potri.017G039200.1.v4.1 annot-version=v4.1 ATGGAGCGGAACCAGAACATAAAGCAGTTCAAAGGCCAAACAAGACTACCAAAGTTTGCCATCCCTGATCGTTATGACCTTCACCTCAAACCTGATCTTT CAGTCTGTACCTTTTCTGGCACCATATGTATTAACCTTAGAATCATTGAACCCACTAAGTTCGTTGTCTTAAATGCTCTTGAACTCAATATCCATGGAGT CTTGTTCACTGACTCTCAGAACCAACAGCAGTTTAGTCCATGTGATATTGTTTTGGATGATGATGATGAGATACTTATGCTGGTCTTTGAAGAAGCACTT AATGCTGGCGATGGAATCCTAAGGATTGACTTTTCTGGGATTCTTAATGAGCATTTGAGAGGGTTCTACAGATGTACTTACATGGATGGAGAAGAGAAGA AGAATATGGCAGTTACTCAGTTTGAAGCAGTGGACGCAAGGAGGTGTTTTCCATGCTGGGATGAACCTGCGCTCAAGGCAACGTTCAAAATAACCATAGA TTTGCCGTTGGAGTTGATAGCTTTGTCTAATATGCCAATCATCGATGAAAAGCTTACTGGGAATGTCAAGACTGTTTATTTCGACGAGTCTCCTCTCATG TCAACTTATTTGGTGGCTGTTGTTATTGGGTTATTCGACTATGTTGAAGACACGACAGCTGATGGGGTCAAGGTTCGTGTGTACTGTCCTTTGGGTCAGG CTAACGAAGGGAAATATGCTCTAAGTATTGCTGTCAGGGCACTTGATTTATTTGCTGAGTACTTCTCGATGCCCTACCCGCTTCCTAAGCTGGATATGGT TGCTGTCCCTGAATTTTCTGGTGGAGCCATGGAGAATTATGGTCTTATAATTTATCGTGAAAATGAGTTACTATATGATGATCTGCAGTCTACAGCTGCT AGAAAGCAGATAATGACAATTGTTGTAATGCATGAAGTGGCCCATCATTGGTTTGGCAATCTAGTTACTATGGAATGGTGGACTCATTTATGGCTAAATG AGGGTTTTGCAACATGGATTAGTTACATGGCAACAGATGGCTTGTTTCCTGAGTGGAAAATATGGACTCGGTTTCTTCAGCAAACAACTGGTGGCTTGCG TGTCGATGCTCTAGAAGGATCACATCCAATTGAGGTGGAGGTACACCAAGCTCGTTCAGTGAATGAAATCTTCGATGCAATCAGCTATAAGAAGGGATCA GCTGTTATCAGAATGTTGCAGGGCTATCTTGGGGATGACATATTGCAGAAAGCCTTGAGCTCATACATGGAAAAATACGCTTGGAAAAATGCCAAGACAG AAGATTTATGGAGCGTTCTTTCAGAAGAATCTGGTATTCAAGTGAACAAAATGATGGATTGCTGGACAAAGAAAAAAGGATATCCAGTCATTTCCGTAAA ATCTGAAGACCACTTCTTAGAATTTGAACAGTCACAATTCCTGTCATCTGGTTTGCATGGTGAGGGGAAATGGATTGTTCCAATAACTTTGTTCCTTGGC TCTTACAACAGACGCAAGAATTTCCTGTTAGAGTCAAAATTTGAAAAGGTGGATGTATCTGAGCTCTTTTCATCTTCTGATGGGTATTCTGGCTCATTCA ATGAAGCTAACGAGGAGAAATGTTCCGAGTTTGTATGGGTCAAAGTTAACGTTGAGCAGAGTGGTTTCTATAGAGTAAAATATGAAGATAAACTTGCAGC TCAACTGAGGAAAGCAGTAGAGAAAAATTGCTTGTTGGCAACAGATAAATTTGGGGTTCTGGATGATGCATTTGCTCTTTGCCAGGCTTGTGAAATATCA ATATCATCTTTGCTTTCTTTGATGGATGTATACAGAAAAGAGTTGGATTATGCTGTATTGTCAAAACTCATTGATGTATGCTATAGTGTCGTTGAGATCT CGATAGACGCCATCCCAGATGCAGTGAATGAGTTGAAAACGTTTTTCATCAACCTCCTCCTATTTTCTGCTGAGAAATTAGGATGGGAATCGGTTCCAGG TGAGATCCACTTAAATACAATGTTAAGAGGAGATGTATACAAGGCCTTGGCTACCTTTGGGCATGATAAAACTCACAGTGAAGCAATGCAGCGGTTTGAA TCGTTGTTAAATGACAGAGCCACACCTCTTCTTTCAGCTGATATAAGAAAGGCTGCGTACATTGCTATAATGAGGAATGCTAGCACCACAAATAGAAATG GTTTTGAGTCCTTGTTGAAGATTTTGAGAGAAGCCGATACAGTTCATGAGAAGGAACGTGTTTTGGGATGTATAGCTTCATGTCCAGACTCGGAGATAGT TCTAGAAGTTCTGAACCTGTTGGTTTCTGATGAGGTTCGGGATCAGGACATCATCTATGGACTGCGTGGAATTAGCTTAGAGGGCCGCGAAATAGCATGG AGATGGTTGAAGGACAACTGGGACCTAATCTTGAACAAATATGGTGATGGACTTCTAATCACCCATTTCATTAGAGATATCATCACACCATTCTGCAGCA ATGAAAAGGCTGATGAAGTGACAGAATTTTTTGCTACTCGGGCAACTCCAGGGATTGCAATGAATTTGAAGCAAAGCATAGAGCAAGTAAGAATCAAGGC AAGGTGGGTTCAAAGCATAAAGCAAGAAAGTTCCCTTGAAGAAGTAATCTCACGACTAGCTTGCTAA
AA sequence Show only first row Show all	>Potri.017G039200.1 pacid=42813592 polypeptide=Potri.017G039200.1.p locus=Potri.017G039200 ID=Potri.017G039200.1.v4.1 annot-version=v4.1 MERNQNIKQFKGQTRLPKFAIPDRYDLHLKPDLSVCTFSGTICINLRIIEPTKFVVLNALELNIHGVLFTDSQNQQQFSPCDIVLDDDDEILMLVFEEAL NAGDGILRIDFSGILNEHLRGFYRCTYMDGEEKKNMAVTQFEAVDARRCFPCWDEPALKATFKITIDLPLELIALSNMPIIDEKLTGNVKTVYFDESPLM STYLVAVVIGLFDYVEDTTADGVKVRVYCPLGQANEGKYALSIAVRALDLFAEYFSMPYPLPKLDMVAVPEFSGGAMENYGLIIYRENELLYDDLQSTAA RKQIMTIVVMHEVAHHWFGNLVTMEWWTHLWLNEGFATWISYMATDGLFPEWKIWTRFLQQTTGGLRVDALEGSHPIEVEVHQARSVNEIFDAISYKKGS AVIRMLQGYLGDDILQKALSSYMEKYAWKNAKTEDLWSVLSEESGIQVNKMMDCWTKKKGYPVISVKSEDHFLEFEQSQFLSSGLHGEGKWIVPITLFLG SYNRRKNFLLESKFEKVDVSELFSSSDGYSGSFNEANEEKCSEFVWVKVNVEQSGFYRVKYEDKLAAQLRKAVEKNCLLATDKFGVLDDAFALCQACEIS ISSLLSLMDVYRKELDYAVLSKLIDVCYSVVEISIDAIPDAVNELKTFFINLLLFSAEKLGWESVPGEIHLNTMLRGDVYKALATFGHDKTHSEAMQRFE SLLNDRATPLLSADIRKAAYIAIMRNASTTNRNGFESLLKILREADTVHEKERVLGCIASCPDSEIVLEVLNLLVSDEVRDQDIIYGLRGISLEGREIAW RWLKDNWDLILNKYGDGLLITHFIRDIITPFCSNEKADEVTEFFATRATPGIAMNLKQSIEQVRIKARWVQSIKQESSLEEVISRLAC

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G33090		ATAPM1, APM1	aminopeptidase M1 (.1)		Potri.017G039200 [exp]	0	1
AT4G23200		CRK12	cysteine-rich RLK (RECEPTOR-li...		Potri.018G111700 [exp]	1.00	0.9763
AT3G26430			GDSL-like Lipase/Acylhydrolase...		Potri.005G177900 [exp]	1.41	0.9588
AT1G79600			Protein kinase superfamily pro...		Potri.002G000100 [exp]	4.58	0.9547
AT3G51550		FER	FERONIA, Malectin/receptor-lik...		Potri.017G096800 [exp]	5.47	0.9522
AT4G23200		CRK12	cysteine-rich RLK (RECEPTOR-li...		Potri.018G111800 [exp]	8.00	0.9540
AT2G03340	WRKY	WRKY3	WRKY DNA-binding protein 3 (.1...		Potri.008G091900 [exp]	10.09	0.9367	WRKY3.1
AT5G23670		ATLCB2, LCB2	long chain base2 (.1.2)		Potri.015G103800 [exp]	10.39	0.9490	LJLCB2.1
AT5G53110			RING/U-box superfamily protein...		Potri.003G139900 [exp]	10.90	0.9516
AT2G43750		CPACS1, ATCS-B,...	CHLOROPLAST O-ACETYLSERINE SUL...		Potri.013G127800 [exp]	13.56	0.9400
AT5G38260			Protein kinase superfamily pro...		Potri.017G034500 [exp]	14.49	0.9418

Compare expression of checked genes

Potri.017G039200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.