Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G21880 288 / 2e-94 CO COL12 B-box type zinc finger protein with CCT domain (.1) AT3G07650 196 / 1e-58 CO COL9 CONSTANS-like 9 (.1.2.3.4) AT5G48250 194 / 6e-58 CO COL10 B-box type zinc finger protein with CCT domain (.1) AT4G15250 166 / 6e-48 CO COL11 B-box type zinc finger protein with CCT domain (.1) AT1G68190 116 / 5e-29 CO B-box zinc finger family protein (.1) AT2G33500 104 / 1e-24 CO COL14 B-box type zinc finger protein with CCT domain (.1.2) AT5G15850 103 / 3e-24 CO COL1, ATCOL1 CONSTANS-like 1 (.1) AT1G28050 100 / 9e-23 CO COL15 B-box type zinc finger protein with CCT domain (.1) AT2G47890 88 / 8e-20 CO COL13 B-box type zinc finger protein with CCT domain (.1.2) AT5G24930 70 / 6e-13 CO COL4, ATCOL4 CONSTANS-like 4 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G121200 [exp] 722 / 0 AT3G21880 291 / 1e-95 B-box type zinc finger protein with CCT domain (.1) Potri.014G170600 [exp] 239 / 1e-74 AT3G07650 328 / 3e-110 CONSTANS-like 9 (.1.2.3.4) Potri.002G214500 [exp] 217 / 3e-66 AT3G07650 355 / 9e-121 CONSTANS-like 9 (.1.2.3.4) Potri.008G125200 [exp] 106 / 1e-24 AT1G68190 144 / 8e-39 B-box zinc finger family protein (.1) Potri.001G061800 [exp] 102 / 3e-23 AT2G33500 213 / 6e-64 B-box type zinc finger protein with CCT domain (.1.2) Potri.003G166000 [exp] 97 / 2e-21 AT1G28050 204 / 2e-59 B-box type zinc finger protein with CCT domain (.1) Potri.014G134601 [exp] 85 / 3e-18 AT2G47890 174 / 4e-53 B-box type zinc finger protein with CCT domain (.1.2) Potri.002G208100 [exp] 78 / 1e-15 AT2G47890 276 / 4e-91 B-box type zinc finger protein with CCT domain (.1.2) Potri.001G323500 [exp] 78 / 2e-15 AT2G33500 213 / 2e-64 B-box type zinc finger protein with CCT domain (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015098 [exp] 352 / 4e-119 AT3G21880 260 / 4e-84 B-box type zinc finger protein with CCT domain (.1) Lus10031584 [exp] 343 / 1e-114 AT3G21880 256 / 2e-81 B-box type zinc finger protein with CCT domain (.1) Lus10039695 [exp] 261 / 2e-83 AT4G15250 207 / 4e-63 B-box type zinc finger protein with CCT domain (.1) Lus10036419 [exp] 208 / 5e-63 AT5G48250 332 / 8e-112 B-box type zinc finger protein with CCT domain (.1) Lus10041096 [exp] 120 / 2e-30 AT5G48250 374 / 2e-129 B-box type zinc finger protein with CCT domain (.1) Lus10002578 [exp] 107 / 3e-25 AT1G28050 299 / 3e-97 B-box type zinc finger protein with CCT domain (.1) Lus10001806 [exp] 100 / 2e-22 AT1G28050 298 / 1e-96 B-box type zinc finger protein with CCT domain (.1) Lus10035257 [exp] 92 / 3e-20 AT1G68190 194 / 8e-59 B-box zinc finger family protein (.1) Lus10034625 [exp] 84 / 3e-17 AT1G68190 182 / 3e-52 B-box zinc finger family protein (.1) Lus10040900 [exp] 82 / 9e-17 AT2G47890 289 / 1e-95 B-box type zinc finger protein with CCT domain (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0281 [poplar] [flax] CCT PF06203 [poplar] [flax] CCT CCT motif
Representative CDS sequence Show only first row Show all	>Potri.017G039301.1 pacid=42813782 polypeptide=Potri.017G039301.1.p locus=Potri.017G039301 ID=Potri.017G039301.1.v4.1 annot-version=v4.1 ATGGAATCTGTATGTGATTTTTGTGGAGTGGCAAGGGCAGTAGTTTACTGTAAACCAGATTCAGCAAAGCTGTGCCTGCACTGTGATGGATGCGTGCATT CGGCTAATTTTTTGTCGCGAAGGCATCCGCGTTCGCTGCTATGCGATAAGTGCAGTTCACAGCCTGCAATGGCACGGTGCTTAGATGAAAAGATGTCTGT TTGTCAAGGCTGTGATTGCAGAGCAAATGGATGTTCAATCTTAGGGCATCAGCTTCGGGCGTTGAATTGTTATACAGGTTGTTACTCTTTGGCCGAGTTT CCGAAGATTTGGTCATCGGTTCTTCAGGGACCTTCTTCAGGAGCCCTTGATTCAGGACGGGATTCACTGAATTCTGCGCCAATAAATGAGAATTGCATTA GTTGGTTGGAACAAGGGGAAAATGAGGGATCGTTTGGCTTGATTACTGGCAAGTTGAATGAACTAGAATCTTGTTCCAAGCTTGAATCCTGGAGGGGGCC GCCGAGCGTTATCATGCCGAATCCTACCTACATGCCTTGTTCTACAGATCAAGTGCCTCTGTTGCCAGAGGTGTCAAACCTGCCGAAGCAGGGTTGTTCC ATATTTAAGGATATTGGACTTTCTGATGGTGAAGATCTCTGTGAAGGTCTCAACATGGATGACATACCATTGGACTTCGAAAACAGTGATGGAATATTTG GCTGTCCAGAAAGTCATAACAGATATCCGTTTGAGGATGTAGGAAAAGATTGCATGTTAATGGAGAAAAACTTATCAGTTACCGAGTCTAATGGCCCTAT CGAGAATGCTATAGAGGTGTCATCATCGGGACAACAGGATTGTGTTGCCTTCCAATCATCTTGTGTTTCTGGGCCTGTTAGTGCAATACAGAACATAAGT AGTAATGCTAATTGCAGCATGTTTACAAATCCTAGTTGCAGCAGAAACCTCCATCTAGGATTTCCTGCTGGTACTGGACAAGTTCATCCAAGCATGTCGC TTTCACTATCCAACATAATTGGTGAAAGTAGTGCTGCTGATTATCAAGATTGTGGATTATCGCCAATATTTCTGACTGGTGAATCACCATGGGAATCACA TTTGGATGCTAGCTCTCCACACGCAAGAGACAAGGCTAAGATGAGATACAACGAAAAGAAGAAGACACGAACTTTCAGAAAGCAAATCAGATATGCCTCT CGTAAAGCCAGGGCTGATACTCGAAAACGAGTAAAAGGTAGATTTGTTAAAGCTGGGGAAGCATAA
AA sequence Show only first row Show all	>Potri.017G039301.1 pacid=42813782 polypeptide=Potri.017G039301.1.p locus=Potri.017G039301 ID=Potri.017G039301.1.v4.1 annot-version=v4.1 MESVCDFCGVARAVVYCKPDSAKLCLHCDGCVHSANFLSRRHPRSLLCDKCSSQPAMARCLDEKMSVCQGCDCRANGCSILGHQLRALNCYTGCYSLAEF PKIWSSVLQGPSSGALDSGRDSLNSAPINENCISWLEQGENEGSFGLITGKLNELESCSKLESWRGPPSVIMPNPTYMPCSTDQVPLLPEVSNLPKQGCS IFKDIGLSDGEDLCEGLNMDDIPLDFENSDGIFGCPESHNRYPFEDVGKDCMLMEKNLSVTESNGPIENAIEVSSSGQQDCVAFQSSCVSGPVSAIQNIS SNANCSMFTNPSCSRNLHLGFPAGTGQVHPSMSLSLSNIIGESSAADYQDCGLSPIFLTGESPWESHLDASSPHARDKAKMRYNEKKKTRTFRKQIRYAS RKARADTRKRVKGRFVKAGEA

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G21880	CO	COL12	B-box type zinc finger protein...		Potri.017G039301 [exp]	0	1
					Potri.015G116300 [exp]	2.44	0.8387
AT4G02070		ATMSH6, MSH6-1	MUTS HOMOLOG 6-1, ARABIDOPSIS...		Potri.008G190950 [exp]	6.48	0.8056
AT2G31955		CNX2	cofactor of nitrate reductase ...		Potri.001G230604 [exp]	6.48	0.7786
AT1G77000		ATSKP2;2, SKP2B	ARABIDOPSIS HOMOLOG OF HOMOLOG...		Potri.005G185700 [exp]	7.07	0.8102
AT4G02070		ATMSH6, MSH6-1	MUTS HOMOLOG 6-1, ARABIDOPSIS...		Potri.008G191051 [exp]	8.36	0.7962
AT1G49180			protein kinase family protein ...		Potri.019G007200 [exp]	14.69	0.7689
AT3G19640		MRS2-3, MGT4	magnesium transporter 4 (.1)		Potri.001G291932 [exp]	19.89	0.7969
AT3G18960	B3		AP2/B3-like transcriptional fa...		Potri.012G093200 [exp]	23.62	0.7516
AT5G51180			alpha/beta-Hydrolases superfam...		Potri.001G079400 [exp]	38.07	0.7540
AT5G64667		IDL2	inflorescence deficient in abs...		Potri.002G070401 [exp]	70.99	0.7468

Compare expression of checked genes

Potri.017G039301 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.