Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G15240 491 / 9e-171 Protein of unknown function (DUF604) (.1) AT1G05280 312 / 2e-101 Protein of unknown function (DUF604) (.1) AT5G41460 301 / 3e-96 Protein of unknown function (DUF604) (.1) AT4G23490 300 / 9e-96 Protein of unknown function (DUF604) (.1) AT1G01570 291 / 8e-93 Protein of unknown function (DUF604) (.1) AT4G11350 291 / 2e-92 Protein of unknown function (DUF604) (.1), Protein of unknown function (DUF604) (.2) AT2G37730 284 / 1e-89 Protein of unknown function (DUF604) (.1) AT1G07850 278 / 3e-87 Protein of unknown function (DUF604) (.1) AT3G11420 260 / 8e-81 Protein of unknown function (DUF604) (.1) AT1G33250 251 / 6e-77 Protein of unknown function (DUF604) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G039600 [exp] 397 / 2e-134 AT1G05280 479 / 3e-167 Protein of unknown function (DUF604) (.1) Potri.003G131400 [exp] 300 / 4e-96 AT5G41460 732 / 0.0 Protein of unknown function (DUF604) (.1) Potri.009G026300 [exp] 299 / 1e-95 AT1G07850 637 / 0.0 Protein of unknown function (DUF604) (.1) Potri.016G101200 [exp] 296 / 9e-95 AT2G37730 618 / 0.0 Protein of unknown function (DUF604) (.1) Potri.001G100700 [exp] 295 / 6e-94 AT4G23490 757 / 0.0 Protein of unknown function (DUF604) (.1) Potri.006G089150 [exp] 286 / 9e-91 AT2G37730 626 / 0.0 Protein of unknown function (DUF604) (.1) Potri.008G058900 [exp] 284 / 6e-90 AT3G11420 493 / 1e-171 Protein of unknown function (DUF604) (.1) Potri.010G199900 [exp] 281 / 5e-89 AT3G11420 481 / 7e-167 Protein of unknown function (DUF604) (.1) Potri.012G107800 [exp] 276 / 5e-87 AT4G23490 546 / 0.0 Protein of unknown function (DUF604) (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027152 [exp] 477 / 1e-165 AT4G15240 521 / 0.0 Protein of unknown function (DUF604) (.1) Lus10039693 [exp] 463 / 1e-160 AT4G15240 495 / 1e-173 Protein of unknown function (DUF604) (.1) Lus10027153 [exp] 378 / 2e-126 AT1G05280 479 / 4e-167 Protein of unknown function (DUF604) (.1) Lus10039692 [exp] 340 / 5e-112 AT1G05280 476 / 3e-166 Protein of unknown function (DUF604) (.1) Lus10018123 [exp] 286 / 2e-90 AT5G41460 589 / 0.0 Protein of unknown function (DUF604) (.1) Lus10017514 [exp] 284 / 1e-89 AT5G41460 759 / 0.0 Protein of unknown function (DUF604) (.1) Lus10032293 [exp] 281 / 2e-88 AT4G23490 740 / 0.0 Protein of unknown function (DUF604) (.1) Lus10036382 [exp] 270 / 3e-84 AT4G11350 580 / 0.0 Protein of unknown function (DUF604) (.1), Protein of unknown function (DUF604) (.2) Lus10002713 [exp] 246 / 1e-75 AT3G11420 460 / 5e-159 Protein of unknown function (DUF604) (.1) Lus10008293 [exp] 239 / 2e-72 AT1G33250 611 / 0.0 Protein of unknown function (DUF604) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0110 [poplar] [flax] GT-A PF02434 [poplar] [flax] Fringe Fringe-like
Representative CDS sequence Show only first row Show all	>Potri.017G039500.2 pacid=42814212 polypeptide=Potri.017G039500.2.p locus=Potri.017G039500 ID=Potri.017G039500.2.v4.1 annot-version=v4.1 ATGTACGAAAATAGAAAAAGAAAACACTACACCACCACCTCAACCACCGTAACCACCGTTTCTCATCCTCTCTCTAGAAACATGCAACCACCGCCAACCA CCGCCACCACCTCTAAGAAAACTCTAACACTAACCCCATCACGTCTGAAAGATCTCTTACTAATCTTATCCTTCCTAATAATAATCTACCTCCTCTTCTC CTCACCGCGACCTCAACTTTCCTTAACTCCACGCACCACCCCATCGACTACCTTTCCCACCACTCGCCGCCATATTGTCTTCTCCATAGCATCTTCTTCT ACCTCTTTCATTCACCGCCAACCCTACATCCGCCTATGGTACAACCCCACCACCACGCGTGCTTTCGCTTTCCTTGATCGGGAAGTTGTCGACCCCACTG GAAATAACAATCGCTCCGTAATAGATCCCACGCTCCCTCCTGTAATAATCTCCAAAGACACATCTTCCTTCCCTTATACCTTCAAAGGCGGCCTTAAATC CGCCATTAGAGTGGCGCGTGTAGTAAAGGAAGTTGTGGAGCTTAATGAACCGGATGTTGATTGGTTCGTGTTTGGTGATGATGATACTGTGTTTTTTGTG GAGAACTTGGTTACCGTTTTGTCGAAATATGATCATAATGGATGGTTTTACGTGGGGAGTAATTCAGAGAGTTATAGTCAGAATGTGAAGAATTCATTTG AAATGGGGTTTGGTGGAGGTGGGTTTGCAATAAGTTATTCGTTAGCTAAGGTTTTAGCTAGGGTTTTAGACTCATGTTTGGTGCGTTATGCTCATTTGTA CGGCAGTGATGCAAGGATTTTCTCCTGTTTGGCAGAGTTAGGTGTTGGTTTGAGTCATGAGCCTGGGTTTCATCAGGTTGATATGCGAGGGGATTTGTTT GGAATGTTGTCTGCACATCCATTGTCTCCTTTGGTGTCTCTTCATCATTTGGATGCTGTGAACCCTATCTTTCCAAAAATGAGCAAGACTCAAGCTTTAG AACATCTTTTTAATGGTGTGAATGTCGACCCTGCTAGGATTTTGCAGCAAACAGTTTGCTATGACCCTGTATATTCATTGACTGTTTCAGTTGCATGGGG ATATTCTGTTCAGGTGTTTGAAGGCAATGAGTTTCTTCCAGATCTTCTTACACCACAGAGAACATTTATACCATGGAGGAGAGGAGGAAATGCTGAATTC AATCGTTTTATGTTTAATATAAGAGAATATCCCAAAGATCCCTGTAAAAGACCTGTTGTCTTTTTCATGGAAAGTGTTACCTCTGGTAAAAATGGCATTT GGAGCAATTACATCAGACATGATGTTGCTGATTGTAACAGAGGTTATGCCATGAAGAATCTGGAACTTGTTAGAGTACTGTCCCAGAAACTAGAACCAGA TATTGAACAGATGAAGGCTCCTCGTCGACAATGCTGTGACCTTTCTCCCTTATTTAATGGGTCAATGGTCATTAGCATTAGGAAATGTGGTTCTGATGAA CTAATTGCTATGCATTCCTAA
AA sequence Show only first row Show all	>Potri.017G039500.2 pacid=42814212 polypeptide=Potri.017G039500.2.p locus=Potri.017G039500 ID=Potri.017G039500.2.v4.1 annot-version=v4.1 MYENRKRKHYTTTSTTVTTVSHPLSRNMQPPPTTATTSKKTLTLTPSRLKDLLLILSFLIIIYLLFSSPRPQLSLTPRTTPSTTFPTTRRHIVFSIASSS TSFIHRQPYIRLWYNPTTTRAFAFLDREVVDPTGNNNRSVIDPTLPPVIISKDTSSFPYTFKGGLKSAIRVARVVKEVVELNEPDVDWFVFGDDDTVFFV ENLVTVLSKYDHNGWFYVGSNSESYSQNVKNSFEMGFGGGGFAISYSLAKVLARVLDSCLVRYAHLYGSDARIFSCLAELGVGLSHEPGFHQVDMRGDLF GMLSAHPLSPLVSLHHLDAVNPIFPKMSKTQALEHLFNGVNVDPARILQQTVCYDPVYSLTVSVAWGYSVQVFEGNEFLPDLLTPQRTFIPWRRGGNAEF NRFMFNIREYPKDPCKRPVVFFMESVTSGKNGIWSNYIRHDVADCNRGYAMKNLELVRVLSQKLEPDIEQMKAPRRQCCDLSPLFNGSMVISIRKCGSDE LIAMHS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G15240			Protein of unknown function (D...		Potri.017G039500 [exp]	0	1
AT3G08020			PHD finger family protein (.1)		Potri.009G059500 [exp]	4.24	0.8805
AT2G31260		ATAPG9, APG9	autophagy 9 (APG9) (.1)		Potri.002G039900 [exp]	5.65	0.8813	APG9.1
AT2G27940			RING/U-box superfamily protein...		Potri.001G212101 [exp]	6.00	0.8746
AT2G33730			P-loop containing nucleoside t...		Potri.012G045800 [exp]	8.06	0.8720
AT1G11240			unknown protein		Potri.004G035200 [exp]	10.09	0.8255
AT4G25210	GeBP		DNA-binding storekeeper protei...		Potri.001G293900 [exp]	10.48	0.8419
AT2G20330			Transducin/WD40 repeat-like su...		Potri.014G193500 [exp]	12.84	0.8269
AT4G36650		ATPBRP	plant-specific TFIIB-related p...		Potri.007G027600 [exp]	13.41	0.8695
AT5G14540			Protein of unknown function (D...		Potri.001G348500 [exp]	15.36	0.7836
AT3G25210			Tetratricopeptide repeat (TPR)...		Potri.002G248100 [exp]	17.54	0.8166

Compare expression of checked genes

Potri.017G039500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.