Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G05280 480 / 1e-167 Protein of unknown function (DUF604) (.1) AT4G15240 410 / 6e-140 Protein of unknown function (DUF604) (.1) AT1G01570 361 / 1e-120 Protein of unknown function (DUF604) (.1) AT5G41460 347 / 8e-115 Protein of unknown function (DUF604) (.1) AT4G23490 345 / 5e-114 Protein of unknown function (DUF604) (.1) AT4G11350 343 / 4e-113 Protein of unknown function (DUF604) (.1), Protein of unknown function (DUF604) (.2) AT2G37730 327 / 1e-106 Protein of unknown function (DUF604) (.1) AT3G11420 322 / 4e-105 Protein of unknown function (DUF604) (.1) AT1G33250 315 / 6e-102 Protein of unknown function (DUF604) (.1) AT1G07850 313 / 2e-101 Protein of unknown function (DUF604) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G039500 [exp] 438 / 3e-150 AT4G15240 491 / 9e-171 Protein of unknown function (DUF604) (.1) Potri.009G026300 [exp] 355 / 6e-118 AT1G07850 637 / 0.0 Protein of unknown function (DUF604) (.1) Potri.003G131400 [exp] 348 / 3e-115 AT5G41460 732 / 0.0 Protein of unknown function (DUF604) (.1) Potri.001G100700 [exp] 343 / 3e-113 AT4G23490 757 / 0.0 Protein of unknown function (DUF604) (.1) Potri.006G089150 [exp] 337 / 8e-111 AT2G37730 626 / 0.0 Protein of unknown function (DUF604) (.1) Potri.012G107800 [exp] 335 / 1e-110 AT4G23490 546 / 0.0 Protein of unknown function (DUF604) (.1) Potri.016G101200 [exp] 335 / 2e-110 AT2G37730 618 / 0.0 Protein of unknown function (DUF604) (.1) Potri.010G199900 [exp] 311 / 1e-100 AT3G11420 481 / 7e-167 Protein of unknown function (DUF604) (.1) Potri.011G147300 [exp] 310 / 3e-100 AT1G33250 648 / 0.0 Protein of unknown function (DUF604) (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027153 [exp] 634 / 0 AT1G05280 479 / 4e-167 Protein of unknown function (DUF604) (.1) Lus10039692 [exp] 579 / 0 AT1G05280 476 / 3e-166 Protein of unknown function (DUF604) (.1) Lus10027152 [exp] 421 / 5e-144 AT4G15240 521 / 0.0 Protein of unknown function (DUF604) (.1) Lus10039693 [exp] 408 / 1e-139 AT4G15240 495 / 1e-173 Protein of unknown function (DUF604) (.1) Lus10018123 [exp] 355 / 2e-117 AT5G41460 589 / 0.0 Protein of unknown function (DUF604) (.1) Lus10032293 [exp] 343 / 7e-113 AT4G23490 740 / 0.0 Protein of unknown function (DUF604) (.1) Lus10017514 [exp] 340 / 1e-111 AT5G41460 759 / 0.0 Protein of unknown function (DUF604) (.1) Lus10036382 [exp] 327 / 1e-106 AT4G11350 580 / 0.0 Protein of unknown function (DUF604) (.1), Protein of unknown function (DUF604) (.2) Lus10002713 [exp] 306 / 3e-99 AT3G11420 460 / 5e-159 Protein of unknown function (DUF604) (.1) Lus10008293 [exp] 305 / 2e-98 AT1G33250 611 / 0.0 Protein of unknown function (DUF604) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0110 [poplar] [flax] GT-A PF02434 [poplar] [flax] Fringe Fringe-like
Representative CDS sequence Show only first row Show all	>Potri.017G039600.2 pacid=42814527 polypeptide=Potri.017G039600.2.p locus=Potri.017G039600 ID=Potri.017G039600.2.v4.1 annot-version=v4.1 ATGAAACTTCGGCAGCTATTGCCGGAAAAGCCCCATTTTCCTTCTCGGTTTATCCACTTAGTTATGGTCTCATTTTCTGCTTGCATCATCTGTCTTCTCG TGTCACTCTTCCTGGTAGGCACTTCCAGGCTTGCACATATAAATTCATCTTCAGGAAACGTGCGTGCTCCAACAACTCTTAATCATATTGTGTTTGGGAT TGCTTCAAGCAAAATCTCGTGGCCGAATAGAAAGGAATATGTTAAGCTGTGGTGGAAGCCAGACCATATGCGAGGATGTGTGTTCCTGGAGAGCATGGTT GAGGAAGCAAATTCCTACAATGACAGTGGTTCACTCCCTCCTGCATGCATCTCCGAGGACACCTCTCGGTTTCGTTATACTTATCGAAATGGTCCCCGGT CAGCAATTCGTGTGGCACGTGTAGTTTTTGAGACCGTGGCACTTAATCATTCTGATGTGCGGTGGTTTGTTTTTGGGGATGATGACACAGTTTTCCTTCC TGAGAATTTGGTGAAGACTCTTTCCAAGTATGATCATGAGCTTTGGTACTACATAGGATCTAATTCTGAGATTTATGGGCAGAATAGAGAATTTGGCTTT GAGATGGCCTTTGGTGGTGGAGGATTCGCCATAAGTTATCCACTTGCAAAAGTTTTGGCAAAGGTTTTCGATGCTTGTATAGAACGATATCCACATCTAT ATGGAAGTGATTCCAGGATCTATTCTTGCTTAGCAGAGCTTGGCGTAGGATTGACTCATGAACCTGGTTTCCATCAGGTTGATATTCGGGGAGATCCGTT TGGCTTGTTGACTTCACATCCTCTGGCGCCATTGGTATCCCTTCATCATTTGGATCACCTAGACCCCATCTTCCCTAACACGACAACTATGAATTCAATA GAGCATTTCTTTAAAGCAGTAAATATTGATTCCCAGAGGGTTTTGCAGAAAACAGTTTGCTATGATCGTTGGTTTGGGTGGACTATTTCTGTGTCATGGG GCTATGCTGTTGAGGTGTATGGCAATCACGTATTTTTGCCTGACGTTCTCCCCGTGCAACAAACATTCAGGCAGTGGAAAAGGGGAGATGGTTTGGCTGG GGTGTATACTTTTAACACAAGAGAACCTCATCCTGACCTATGCCGAAGACCGACAATCTTCTTTCTGGATCATGTGTCTTCTGGCAGGGACCGAATTACG AGCCTTTACAAGAAAAGTTTTGCAAATTGTTCTAACGACATGGCTTCACCAAGGAAACTAGAAGAGATGAAAGTATATTCGCAGAAGCTCGATCTAAGTG AAAAACAGCTTCGGGCTCCAAGGCGGCAATGCTGTGATGTATTGCCTCCATCTTCTGGCAAAGTGATGGAAATTGCAATTAGAGAATGCAAAGAGGAAGA ACGGGTATACATGCATTAA
AA sequence Show only first row Show all	>Potri.017G039600.2 pacid=42814527 polypeptide=Potri.017G039600.2.p locus=Potri.017G039600 ID=Potri.017G039600.2.v4.1 annot-version=v4.1 MKLRQLLPEKPHFPSRFIHLVMVSFSACIICLLVSLFLVGTSRLAHINSSSGNVRAPTTLNHIVFGIASSKISWPNRKEYVKLWWKPDHMRGCVFLESMV EEANSYNDSGSLPPACISEDTSRFRYTYRNGPRSAIRVARVVFETVALNHSDVRWFVFGDDDTVFLPENLVKTLSKYDHELWYYIGSNSEIYGQNREFGF EMAFGGGGFAISYPLAKVLAKVFDACIERYPHLYGSDSRIYSCLAELGVGLTHEPGFHQVDIRGDPFGLLTSHPLAPLVSLHHLDHLDPIFPNTTTMNSI EHFFKAVNIDSQRVLQKTVCYDRWFGWTISVSWGYAVEVYGNHVFLPDVLPVQQTFRQWKRGDGLAGVYTFNTREPHPDLCRRPTIFFLDHVSSGRDRIT SLYKKSFANCSNDMASPRKLEEMKVYSQKLDLSEKQLRAPRRQCCDVLPPSSGKVMEIAIRECKEEERVYMH

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G05280			Protein of unknown function (D...		Potri.017G039600 [exp]	0	1
AT4G06536			SPla/RYanodine receptor (SPRY)...		Potri.014G025000 [exp]	2.64	0.8786
AT4G27290			S-locus lectin protein kinase ...		Potri.001G411700 [exp]	4.00	0.8766
AT2G31945			unknown protein		Potri.009G024300 [exp]	7.74	0.8676
AT4G33150		LKR/SDH, SDH	lysine-ketoglutarate reductase...		Potri.006G134450 [exp]	9.48	0.8331
AT3G11840		PUB24	plant U-box 24 (.1)		Potri.006G202700 [exp]	10.19	0.8358
AT3G08720		ATPK2, ATPK19, ...	ARABIDOPSIS THALIANA SERINE/TH...		Potri.006G109600 [exp]	10.95	0.8261	Pt-ATPK19.1
AT5G02230			Haloacid dehalogenase-like hyd...		Potri.006G086900 [exp]	12.00	0.8147
AT3G20250		APUM5	pumilio 5 (.1)		Potri.008G004300 [exp]	17.66	0.8253
AT1G03220			Eukaryotic aspartyl protease f...		Potri.002G054900 [exp]	18.00	0.8447
AT4G37990		CAD-B2, ATCAD8,...	CINNAMYL-ALCOHOL DEHYDROGENASE...		Potri.009G063300 [exp]	18.02	0.8558	CAD.2

Compare expression of checked genes

Potri.017G039600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.