Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G60440 123 / 3e-34 MADS AGL62 AGAMOUS-like 62 (.1) AT2G24840 110 / 1e-29 MADS DIA, AGL61 DIANA, AGAMOUS-like 61 (.1) AT4G36590 100 / 1e-25 MADS MADS-box transcription factor family protein (.1) AT1G65360 94 / 8e-24 MADS AGL23 AGAMOUS-like 23 (.1) AT1G72350 94 / 9e-24 MADS MADS-box transcription factor family protein (.1) AT1G01530 88 / 4e-21 MADS AGL28 AGAMOUS-like 28 (.1) AT2G34440 84 / 2e-20 MADS AGL29 AGAMOUS-like 29 (.1) AT4G09960 82 / 3e-19 MADS AGL11, STK SEEDSTICK, AGAMOUS-like 11, K-box region and MADS-box transcription factor family protein (.1.2.3.4) AT3G04100 82 / 4e-19 MADS AGL57 AGAMOUS-like 57 (.1) AT3G66656 80 / 1e-18 MADS AGL91 AGAMOUS-like 91 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G039800 [exp] 325 / 7e-115 AT5G60440 116 / 1e-31 AGAMOUS-like 62 (.1) Potri.017G040600 [exp] 325 / 1e-114 AT5G60440 117 / 7e-32 AGAMOUS-like 62 (.1) Potri.004G002400 [exp] 145 / 1e-43 AT5G60440 107 / 3e-28 AGAMOUS-like 62 (.1) Potri.016G118900 [exp] 132 / 1e-38 AT5G60440 123 / 4e-34 AGAMOUS-like 62 (.1) Potri.009G084200 [exp] 125 / 8e-36 AT5G60440 211 / 2e-68 AGAMOUS-like 62 (.1) Potri.017G047300 [exp] 125 / 2e-35 AT5G60440 185 / 2e-57 AGAMOUS-like 62 (.1) Potri.009G084100 [exp] 120 / 4e-34 AT5G60440 163 / 2e-49 AGAMOUS-like 62 (.1) Potri.007G113800 [exp] 121 / 6e-34 AT5G60440 191 / 4e-60 AGAMOUS-like 62 (.1) Potri.004G130900 [exp] 109 / 6e-30 AT3G04100 140 / 5e-42 AGAMOUS-like 57 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012449 [exp] 104 / 2e-27 AT5G60440 157 / 4e-47 AGAMOUS-like 62 (.1) Lus10020511 [exp] 103 / 6e-27 AT5G60440 162 / 9e-49 AGAMOUS-like 62 (.1) Lus10015726 [exp] 96 / 2e-24 AT5G60440 102 / 2e-26 AGAMOUS-like 62 (.1) Lus10037450 [exp] 93 / 2e-23 AT5G60440 101 / 7e-26 AGAMOUS-like 62 (.1) Lus10030663 [exp] 92 / 3e-23 AT2G24840 122 / 2e-34 DIANA, AGAMOUS-like 61 (.1) Lus10030824 [exp] 91 / 5e-23 AT2G24840 124 / 4e-35 DIANA, AGAMOUS-like 61 (.1) Lus10016563 [exp] 90 / 2e-22 AT2G34440 134 / 5e-40 AGAMOUS-like 29 (.1) Lus10003481 [exp] 90 / 3e-22 AT5G60440 99 / 7e-25 AGAMOUS-like 62 (.1) Lus10003940 [exp] 91 / 4e-22 AT5G60440 102 / 2e-25 AGAMOUS-like 62 (.1) Lus10011787 [exp] 87 / 3e-21 AT2G34440 133 / 1e-39 AGAMOUS-like 29 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00319 [poplar] [flax] SRF-TF SRF-type transcription factor (DNA-binding and dimerisation domain)
Representative CDS sequence Show only first row Show all	>Potri.017G040700.2 pacid=42813711 polypeptide=Potri.017G040700.2.p locus=Potri.017G040700 ID=Potri.017G040700.2.v4.1 annot-version=v4.1 ATGATGATGTTAAATAAACGCAAAAAGCAAACCCAAGGCCGTCAAAAAATAGAGATCAAGCAGATAGAAGAGAAGAGCAATCTACAGGTGACGTTCTCAA AGCGTCGTGGGGGTCTAGTCAAGAAAGCAAGCGAGCTAAGCCTTCTCTGCGGGGCACAAGTGGCCATTCTTGCCTTCTCTCCAGGCAAAAAGGTCTTTGC GTTTGGTCACCGCGATGTCGACATGGTACTTGATCGTTATCTCACTGAGAGTTCTACTGCTGGGGAACTAGGGGCCGCGAGTAACGACCCTCAAGTTCAA CAATGGAACAAAGAGTACGAGGAGGCATTGAAAGAGTTGGAGGAGGAGAAGAAGCATGTGGCAATGGCTGAACAGTGGAATAAGGTGTGTGAAAATAATG TTAATGCAAGGTTCTGGTGGGATGAACCTATTGATGATATGGAATTGGAGGAGCTTGAGGAGTATGTGAGGGCCATGGAAGAGTTAAAGAAGAATGTGGC TGCCAGGGCAAATGAGTTAACCATGGCCAACGATCATTTTGGTAATCAAAATATGAGTCATCATCTTGATCTTGGAGTTCATGGTTTTAGTCTTGAAAAT GTTCTATTTTAA
AA sequence Show only first row Show all	>Potri.017G040700.2 pacid=42813711 polypeptide=Potri.017G040700.2.p locus=Potri.017G040700 ID=Potri.017G040700.2.v4.1 annot-version=v4.1 MMMLNKRKKQTQGRQKIEIKQIEEKSNLQVTFSKRRGGLVKKASELSLLCGAQVAILAFSPGKKVFAFGHRDVDMVLDRYLTESSTAGELGAASNDPQVQ QWNKEYEEALKELEEEKKHVAMAEQWNKVCENNVNARFWWDEPIDDMELEELEEYVRAMEELKKNVAARANELTMANDHFGNQNMSHHLDLGVHGFSLEN VLF

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G60440	MADS	AGL62	AGAMOUS-like 62 (.1)		Potri.017G040700 [exp]	0	1
AT1G24590	AP2_ERF	ESR2, DRNL, SOB...	FOR SUPPRESSOR OF PHYTOCHROMEB...		Potri.010G046600 [exp]	2.00	0.9973
AT3G57650		LPAT2	lysophosphatidyl acyltransfera...		Potri.009G054500 [exp]	11.04	0.9972
AT4G24340			Phosphorylase superfamily prot...		Potri.019G050200 [exp]	13.30	0.9972
					Potri.002G184550 [exp]	17.02	0.9970
AT3G23560		ALF5	ABERRANT LATERAL ROOT FORMATIO...		Potri.011G117200 [exp]	22.84	0.9970
AT1G80100		AHP6	histidine phosphotransfer prot...		Potri.003G032400 [exp]	25.25	0.9970
					Potri.011G073141 [exp]	26.38	0.9970
AT4G16730		AtTPS02	terpene synthase 02 (.1)		Potri.019G046201 [exp]	28.74	0.9969
AT5G20110			Dynein light chain type 1 fami...		Potri.003G108700 [exp]	28.98	0.9589
AT3G01140	MYB	NOK, ATMYB106	NOECK, myb domain protein 106 ...		Potri.010G165700 [exp]	29.79	0.9915

Compare expression of checked genes

Potri.017G040700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.