Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	Pt-BMY1.1
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G15210 764 / 0 BAM5, AT-BETA-AMY, BMY1, RAM1, ATBETA-AMY REDUCED BETA AMYLASE 1, ARABIDOPSIS THALIANA BETA-AMYLASE, beta-amylase 5 (.1.2) AT2G32290 719 / 0 BAM6, BMY5 BETA-AMYLASE 5, beta-amylase 6 (.1) AT4G00490 454 / 2e-154 BAM2, BMY9 BETA-AMYLASE 9, beta-amylase 2 (.1) AT3G23920 441 / 5e-149 BAM1, BMY7, TR-BAMY BETA-AMYLASE 7, beta-amylase 1 (.1) AT4G17090 438 / 3e-148 CT-BMY, BMY8, BAM3 BETA-AMYLASE 8, BETA-AMYLASE 3, chloroplast beta-amylase (.1) AT2G45880 397 / 2e-130 BZR BAM7, BMY4 BETA-AMYLASE 4, beta-amylase 7 (.1) AT5G55700 345 / 5e-112 BAM4, BMY6 BETA-AMYLASE 6, beta-amylase 4 (.1.2) AT5G45300 348 / 2e-111 BZR BAM8, BMY2 BETA-AMYLASE 8, beta-amylase 2 (.1.2) AT5G18670 242 / 1e-72 BAM9, BMY3 BETA-AMYLASE 9, beta-amylase 3 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G083800 [exp] 454 / 2e-154 AT4G00490 799 / 0.0 BETA-AMYLASE 9, beta-amylase 2 (.1) Potri.001G148900 [exp] 445 / 5e-151 AT4G17090 885 / 0.0 BETA-AMYLASE 8, BETA-AMYLASE 3, chloroplast beta-amylase (.1) Potri.003G085500 [exp] 437 / 7e-148 AT4G17090 868 / 0.0 BETA-AMYLASE 8, BETA-AMYLASE 3, chloroplast beta-amylase (.1) Potri.010G062900 [exp] 432 / 3e-145 AT3G23920 908 / 0.0 BETA-AMYLASE 7, beta-amylase 1 (.1) Potri.002G159300 [exp] 429 / 2e-142 AT2G45880 858 / 0.0 BETA-AMYLASE 4, beta-amylase 7 (.1) Potri.008G174100 [exp] 423 / 9e-142 AT3G23920 876 / 0.0 BETA-AMYLASE 7, beta-amylase 1 (.1) Potri.014G083700 [exp] 424 / 8e-141 AT2G45880 863 / 0.0 BETA-AMYLASE 4, beta-amylase 7 (.1) Potri.003G106500 [exp] 354 / 5e-114 AT5G45300 831 / 0.0 BETA-AMYLASE 8, beta-amylase 2 (.1.2) Potri.003G143500 [exp] 332 / 2e-106 AT3G23920 442 / 4e-149 BETA-AMYLASE 7, beta-amylase 1 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039701 [exp] 795 / 0 AT4G15210 724 / 0.0 REDUCED BETA AMYLASE 1, ARABIDOPSIS THALIANA BETA-AMYLASE, beta-amylase 5 (.1.2) Lus10018491 [exp] 772 / 0 AT4G15210 697 / 0.0 REDUCED BETA AMYLASE 1, ARABIDOPSIS THALIANA BETA-AMYLASE, beta-amylase 5 (.1.2) Lus10039702 [exp] 756 / 0 AT4G15210 694 / 0.0 REDUCED BETA AMYLASE 1, ARABIDOPSIS THALIANA BETA-AMYLASE, beta-amylase 5 (.1.2) Lus10011035 [exp] 436 / 1e-147 AT4G17090 778 / 0.0 BETA-AMYLASE 8, BETA-AMYLASE 3, chloroplast beta-amylase (.1) Lus10001087 [exp] 435 / 1e-146 AT4G17090 781 / 0.0 BETA-AMYLASE 8, BETA-AMYLASE 3, chloroplast beta-amylase (.1) Lus10004396 [exp] 425 / 8e-143 AT3G23920 848 / 0.0 BETA-AMYLASE 7, beta-amylase 1 (.1) Lus10023700 [exp] 420 / 8e-141 AT3G23920 783 / 0.0 BETA-AMYLASE 7, beta-amylase 1 (.1) Lus10037846 [exp] 407 / 3e-136 AT4G00490 684 / 0.0 BETA-AMYLASE 9, beta-amylase 2 (.1) Lus10003005 [exp] 399 / 2e-133 AT4G17090 709 / 0.0 BETA-AMYLASE 8, BETA-AMYLASE 3, chloroplast beta-amylase (.1) Lus10040134 [exp] 398 / 2e-132 AT4G17090 735 / 0.0 BETA-AMYLASE 8, BETA-AMYLASE 3, chloroplast beta-amylase (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0058 [poplar] [flax] Glyco_hydro_tim PF01373 [poplar] [flax] Glyco_hydro_14 Glycosyl hydrolase family 14
Representative CDS sequence Show only first row Show all	>Potri.017G040800.7 pacid=42814351 polypeptide=Potri.017G040800.7.p locus=Potri.017G040800 ID=Potri.017G040800.7.v4.1 annot-version=v4.1 ATGACAAGCATAATTTATCCAACACCAGGTGCTCTGCGAGAGAAAATGAGGCTACATCACAGGCATCTCCTTTGGGAACTGCCATTGATTTATCGAGGTG AAAGTGCACTAGTAAAAAGGGTAAAACATAGGGTTGCCAGGAGTAAAGCAAGGGAACCACAAGCTGTGGCATTTGAAGTTTCCACCGCAGCATCAGAGGG TGGAAGCAAGTATGATGAAAAGCTGCTACAAAACTATGTGCCACTTTATGTAATGCTCCCATTGGGAGTGGTTACAGCTGACAACGTTTTTGAAGGTGGA GAGAAGCTCGAGAAGCAGCTTAAGGATCTAAGAGCAGCTGGGATTGATGGGGTCATGGTGGATGTATGGTGGGGGATCATAGAAGCCAAAGGCCCTAAGC AGTATGAATGGAGTGCTTATAGGAGCTTGTTTGAACTTGTTAACAAATGTGACCTAAAGATACAAGCCATAATGTCATTCCACCAATGTGGTGGGAATGT AGGGGATGTTGTTTACATCCCAATTCCTCAATGGGTACGTGATATTGGAGAAACAGATCCTGATATCTTTTACACCAATAGATCAGGTAACAGAAACGAG GAGTACCTCTCCCTTGGTGTGGATCACCAGCCTCTCTTTGGTGGGCGGACCGCCATTGAGATGTATAGTGACTACATGAAGAGCTTCAGGGAGAACATGG CGGATTTTCTTGAAGCTGGACAGATAATAGATATTGAAGTAGGGTGTGGAGCAGCAGGGGAGTTAAGATATCCCTCTTATCCAGAAACTCAAGGATGGGT TTTTCCTGGCATTGGGGAATTTCAGTGTTATGATAAATATCTCAAAGCAGAATTCAAAGAGGCAGCAAAAAATGCAGGCCACCCTGAATGGGAATTGCCA GATGATGCAGGGACATACAATGACAAACCTGACTCAACAGAGTTCTTTAAACAAAATGGAACATACCTTACTGAAAAGGGAAAGTTCTTTTTAACTTGGT ATTCCAACAAGTTGCTGATGCATGGAGATGATATCCTCGATGAAGCCAATAAAGCTTTTGTGGGATGTAAAGTCAAATTAGCAGCTAAAGTATCTGGACT GCATTGGTGGTATAAACATCATAGTCATGCTGCGGAGCTCACTGCAGGATACTACAACCTGAAAGACAGAGATGGGTACCGACCAGCAGCAAGGATTCTA TCAAGGCATCATGCTATTATGAATTTCACATGTCTTGAGATGAGGGACTCAGAACAATCAGCAGAAGCTAAAAGTGGACCTCAGGAACTCGTTCAGCAGG TCCTCAGCGGAGCATGGAGAGAGAAGATTGAAGTTGCAGGTGAGAACGCACTTTCAAGATACGATGCTGAAGCTTACAATCAGATCCTTCTCAATGCCAG GCCTAATGGTGTCAACAAGTGGGGTCCTCCTAAACTGAGGATGTTTGGGGTGACATACCTTCGGTTATATGATGAACTATTTGAAGAAAAGAATTTCAAC CTGTTCAAGACATTCGTCAGGAAAATGCATGCTGATCAAGATTACTGCCCAGACCCCAGCAAATATGGCCATGAAATAGGCCCGCTGGAACGATCAAACC CACCGATTCCGGTTGACGATATCATAGATGCAACGACGCCGATGAAGCCTTTCCCATGGAATAAACAAACAGATATGCCGGTTGATGGAGCTGGACAATT TGGTCTGCTTGGTGGTCTGATAAACGGGATCAAATCCATTTTCTTCAAGTGA
AA sequence Show only first row Show all	>Potri.017G040800.7 pacid=42814351 polypeptide=Potri.017G040800.7.p locus=Potri.017G040800 ID=Potri.017G040800.7.v4.1 annot-version=v4.1 MTSIIYPTPGALREKMRLHHRHLLWELPLIYRGESALVKRVKHRVARSKAREPQAVAFEVSTAASEGGSKYDEKLLQNYVPLYVMLPLGVVTADNVFEGG EKLEKQLKDLRAAGIDGVMVDVWWGIIEAKGPKQYEWSAYRSLFELVNKCDLKIQAIMSFHQCGGNVGDVVYIPIPQWVRDIGETDPDIFYTNRSGNRNE EYLSLGVDHQPLFGGRTAIEMYSDYMKSFRENMADFLEAGQIIDIEVGCGAAGELRYPSYPETQGWVFPGIGEFQCYDKYLKAEFKEAAKNAGHPEWELP DDAGTYNDKPDSTEFFKQNGTYLTEKGKFFLTWYSNKLLMHGDDILDEANKAFVGCKVKLAAKVSGLHWWYKHHSHAAELTAGYYNLKDRDGYRPAARIL SRHHAIMNFTCLEMRDSEQSAEAKSGPQELVQQVLSGAWREKIEVAGENALSRYDAEAYNQILLNARPNGVNKWGPPKLRMFGVTYLRLYDELFEEKNFN LFKTFVRKMHADQDYCPDPSKYGHEIGPLERSNPPIPVDDIIDATTPMKPFPWNKQTDMPVDGAGQFGLLGGLINGIKSIFFK

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G15210		BAM5, AT-BETA-A...	REDUCED BETA AMYLASE 1, ARABID...		Potri.017G040800 [exp]	0	1	Pt-BMY1.1
AT5G57655			xylose isomerase family protei...		Potri.018G096049 [exp]	1.73	0.8854
AT3G07350			Protein of unknown function (D...		Potri.004G184700 [exp]	2.82	0.8579
AT1G15670			Galactose oxidase/kelch repeat...		Potri.006G196900 [exp]	7.48	0.8882
AT1G47960		ATC/VIF1, C/VIF...	cell wall / vacuolar inhibitor...		Potri.010G063000 [exp]	7.87	0.8991
AT2G39130			Transmembrane amino acid trans...		Potri.008G036300 [exp]	10.00	0.8822
AT5G21940			unknown protein		Potri.018G048100 [exp]	13.41	0.8312
AT4G35090		CAT2	catalase 2 (.1.2)		Potri.005G251600 [exp]	14.21	0.8043	CAT3,Pt-CAT1.5
AT2G44970			alpha/beta-Hydrolases superfam...		Potri.018G085600 [exp]	15.55	0.8502
AT3G27027			Protein of unknown function (D...		Potri.001G328701 [exp]	16.73	0.8317
AT1G68020		ATTPS6	TREHALOSE -6-PHOSPHATASE SYNTH...		Potri.010G104500 [exp]	27.34	0.8377

Compare expression of checked genes

Potri.017G040800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.