Plant FIBer expression Database

Potri.017G041000 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT3G21330 47 / 1e-05 bHLH bHLH087 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1)
AT3G22100 45 / 3e-05 bHLH bHLH117 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1)
AT4G00120 44 / 6e-05 bHLH IND1, GT140, bHLH040, IND, EDA33 INDEHISCENT, EMBRYO SAC DEVELOPMENT ARREST 33, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1)
AT2G31730 39 / 0.001 bHLH basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.005G060900
[exp]
48 / 2e-06 AT4G00120 151 / 7e-46 INDEHISCENT, EMBRYO SAC DEVELOPMENT ARREST 33, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1)
Potri.007G108000
[exp]
47 / 6e-06 AT4G00120 150 / 3e-45 INDEHISCENT, EMBRYO SAC DEVELOPMENT ARREST 33, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1)
Potri.007G044600
[exp]
46 / 1e-05 AT5G67060 150 / 7e-45 HECATE 1, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10033488
[exp]
52 / 8e-08 AT4G00120 143 / 4e-43 INDEHISCENT, EMBRYO SAC DEVELOPMENT ARREST 33, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1)
Lus10005710
[exp]
44 / 8e-05 AT3G50330 160 / 1e-48 HECATE 2, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1)
Lus10042647
[exp]
44 / 0.0001 AT3G50330 163 / 1e-49 HECATE 2, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1)
PFAM info
Representative CDS sequence
>Potri.017G041000.1 pacid=42814262 polypeptide=Potri.017G041000.1.p locus=Potri.017G041000 ID=Potri.017G041000.1.v4.1 annot-version=v4.1
ATGGAAATGGAGATCGAAGATTTTGATTCGGACTTTGTCTTCAATGGAGATCCAGCAATCCAGTTATTCCCATTAATCTCCGGACATGATCATGCCGACC
GTGCCACCACCTTTAACTCCTCTGTTTTCTCTGACGTTGGAACTCCGGCCACTGCAACACCGATGTTCAACTCTGTTTTCTCTGACACAGGCATGTTAGC
TCCGTCACTTCTCAGTTACTACTACAGCAGCAACGACCTGTTAACTTCAATGCCTCCTCCTCCGAGCACGACGACATCAAACTTCACTAACTTATTGCAC
GAAGATGGTGATAATTACTACTATTACACCCCTCCCGCCTCTGAACAACTCGGTCTTGGCAACTCTTTCGTCTTGGCCCCTGAACTCAGTCCAGCTCACG
AGTCAGCTCAACCTTATGATTTCTTCTCTTCCATCCCGTCGCAGCCAGCGGAGTCAACCCAGCCGCATGACCTTTTCTCTTCGGTCCCGAACGAGTCAGC
AACTCGCTCCGTTTTGAATGACTCACAGACTCTGGAGTCGGTTCTTGGAAAGTTCAATGCTGTTACAAAGAAGCCGAAACGGTCGGGCCAGATGAAGAAA
CCGAAGCGGTCTGCTTTTGACTATGGTACTGGGTCGTCTTCTTCATCAGCATCGGTTCTTGCGAAACAGAGAATCGCTGAGAGGGTGAAATGTTTAAGAA
AGGTGATGCCTTGGATTACTACAAAGATGGACACTGCTACCGTACTTGAAGAGGCCTGTAGGTACATCATGAACTTGCAAGAACAGATTAGAGCTTTAGT
ACAGCCGAGGCCCGCCACTTCTTTCGATCATTATAATAACTTCGTTCATGGTGCTAATGATGGGGGTGGTGGTTATGGGGAGGGGGTGGTCAGTAGGGAG
CAGATTATGGAGATGGTTCTGAAGGCAAATGTGGATCAAAACTTTGTGGGTTTTTGA
AA sequence
>Potri.017G041000.1 pacid=42814262 polypeptide=Potri.017G041000.1.p locus=Potri.017G041000 ID=Potri.017G041000.1.v4.1 annot-version=v4.1
MEMEIEDFDSDFVFNGDPAIQLFPLISGHDHADRATTFNSSVFSDVGTPATATPMFNSVFSDTGMLAPSLLSYYYSSNDLLTSMPPPPSTTTSNFTNLLH
EDGDNYYYYTPPASEQLGLGNSFVLAPELSPAHESAQPYDFFSSIPSQPAESTQPHDLFSSVPNESATRSVLNDSQTLESVLGKFNAVTKKPKRSGQMKK
PKRSAFDYGTGSSSSSASVLAKQRIAERVKCLRKVMPWITTKMDTATVLEEACRYIMNLQEQIRALVQPRPATSFDHYNNFVHGANDGGGGYGEGVVSRE
QIMEMVLKANVDQNFVGF

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT3G21330 bHLH bHLH087 basic helix-loop-helix (bHLH) ... Potri.017G041000
[exp]
0 1
AT3G49142 Tetratricopeptide repeat (TPR)... Potri.005G005700
[exp]
1.41 0.9844
AT3G03740 ATBPM4 BTB-POZ and MATH domain 4 (.1) Potri.019G039500
[exp]
7.28 0.8786
AT1G78895 Reticulon family protein (.1) Potri.008G004200
[exp]
7.48 0.9167
Potri.006G273732
[exp]
7.48 0.9597
Potri.003G153400
[exp]
9.16 0.9466
AT3G59300 Pentatricopeptide repeat (PPR)... Potri.002G230700
[exp]
10.24 0.9416
Potri.005G172250
[exp]
14.69 0.9234
AT1G13245 RTFL17, DVL4 DEVIL 4, ROTUNDIFOLIA like 17 ... Potri.010G129600
[exp]
14.83 0.9328
Potri.001G174000
[exp]
15.49 0.9405
Potri.002G088800
[exp]
15.87 0.9350

Potri.017G041000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.