Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G15180 2387 / 0 SDG2, ATXR3 SET domain protein 2 (.1) AT1G77300 70 / 2e-11 ASHH2, CCR1, SDG8, EFS, LAZ2 LAZARUS 2, CAROTENOID CHLOROPLAST REGULATORY1, ASH1 HOMOLOG 2, histone methyltransferases(H3-K4 specific);histone methyltransferases(H3-K36 specific) (.1), histone methyltransferases(H3-K4 specific);histone methyltransferases(H3-K36 specific) (.2) AT3G59960 64 / 4e-10 SDG24, ASHH4 SET DOMAIN PROTEIN 24, histone-lysine N-methyltransferase ASHH4 (.1) AT2G44150 64 / 9e-10 SDG7, ASHH3 SET DOMAIN-CONTAINING PROTEIN 7, histone-lysine N-methyltransferase ASHH3 (.1) AT4G30860 61 / 1e-08 SDG4, ASHR3 ASH1-related 3, SET domain group 4 (.1) AT5G42400 60 / 3e-08 SDG25, ATXR7 ARABIDOPSIS TRITHORAX-RELATED7, SET domain protein 25 (.1) AT1G05830 57 / 2e-07 SDG30, ATX2 SET DOMAIN PROTEIN 30, trithorax-like protein 2 (.1.2) AT1G76710 56 / 2e-07 ASHH1 ,SDG26 ASH1-RELATED PROTEIN 1, ASH1 RELATED PROTEIN 1, SET domain group 26 (.1.2) AT4G27910 56 / 4e-07 SDG16, ATX4 SET domain protein 16 (.1) AT5G53430 55 / 9e-07 SET29, ATX5, SDG29 SET domain group 29 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G119300 [exp] 4070 / 0 AT4G15180 2427 / 0.0 SET domain protein 2 (.1) Potri.005G260100 [exp] 77 / 2e-13 AT5G42400 397 / 5e-117 ARABIDOPSIS TRITHORAX-RELATED7, SET domain protein 25 (.1) Potri.002G001000 [exp] 76 / 3e-13 AT5G42400 385 / 3e-112 ARABIDOPSIS TRITHORAX-RELATED7, SET domain protein 25 (.1) Potri.005G182100 [exp] 73 / 3e-12 AT1G77300 807 / 0.0 LAZARUS 2, CAROTENOID CHLOROPLAST REGULATORY1, ASH1 HOMOLOG 2, histone methyltransferases(H3-K4 specific);histone methyltransferases(H3-K36 specific) (.1), histone methyltransferases(H3-K4 specific);histone methyltransferases(H3-K36 specific) (.2) Potri.002G079100 [exp] 72 / 7e-12 AT1G77300 820 / 0.0 LAZARUS 2, CAROTENOID CHLOROPLAST REGULATORY1, ASH1 HOMOLOG 2, histone methyltransferases(H3-K4 specific);histone methyltransferases(H3-K36 specific) (.1), histone methyltransferases(H3-K4 specific);histone methyltransferases(H3-K36 specific) (.2) Potri.007G147200 [exp] 64 / 9e-10 AT2G44150 477 / 2e-169 SET DOMAIN-CONTAINING PROTEIN 7, histone-lysine N-methyltransferase ASHH3 (.1) Potri.017G000400 [exp] 61 / 9e-09 AT2G44150 471 / 5e-167 SET DOMAIN-CONTAINING PROTEIN 7, histone-lysine N-methyltransferase ASHH3 (.1) Potri.005G195400 [exp] 60 / 1e-08 AT1G76710 657 / 0.0 ASH1-RELATED PROTEIN 1, ASH1 RELATED PROTEIN 1, SET domain group 26 (.1.2) Potri.014G146300 [exp] 58 / 1e-07 AT1G05830 1273 / 0.0 SET DOMAIN PROTEIN 30, trithorax-like protein 2 (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039707 [exp] 2892 / 0 AT4G15180 2342 / 0.0 SET domain protein 2 (.1) Lus10018496 [exp] 2383 / 0 AT4G15180 2019 / 0.0 SET domain protein 2 (.1) Lus10022112 [exp] 88 / 3e-19 ND / Lus10017731 [exp] 77 / 3e-16 ND 36 / 0.003 Lus10000967 [exp] 76 / 5e-13 AT1G77300 748 / 0.0 LAZARUS 2, CAROTENOID CHLOROPLAST REGULATORY1, ASH1 HOMOLOG 2, histone methyltransferases(H3-K4 specific);histone methyltransferases(H3-K36 specific) (.1), histone methyltransferases(H3-K4 specific);histone methyltransferases(H3-K36 specific) (.2) Lus10028662 [exp] 76 / 6e-13 AT1G77300 774 / 0.0 LAZARUS 2, CAROTENOID CHLOROPLAST REGULATORY1, ASH1 HOMOLOG 2, histone methyltransferases(H3-K4 specific);histone methyltransferases(H3-K36 specific) (.1), histone methyltransferases(H3-K4 specific);histone methyltransferases(H3-K36 specific) (.2) Lus10016051 [exp] 71 / 1e-11 AT5G42400 362 / 9e-104 ARABIDOPSIS TRITHORAX-RELATED7, SET domain protein 25 (.1) Lus10025172 [exp] 70 / 4e-11 AT5G42400 501 / 6e-165 ARABIDOPSIS TRITHORAX-RELATED7, SET domain protein 25 (.1) Lus10010121 [exp] 65 / 1e-09 AT3G61740 1008 / 0.0 SET domain protein 14 (.1.2) Lus10012626 [exp] 65 / 1e-09 AT3G61740 1077 / 0.0 SET domain protein 14 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00856 [poplar] [flax] SET SET domain
Representative CDS sequence Show only first row Show all	>Potri.017G041100.1 pacid=42814634 polypeptide=Potri.017G041100.1.p locus=Potri.017G041100 ID=Potri.017G041100.1.v4.1 annot-version=v4.1 ATGGGTAGTGGAGGTGTCGCATGTATGCCTTTGCAACACGGTAGTAATAATATCATCATGGAAGAAAGATTTCCTGTTCAAGAACAGCCTACAGCAGCAG CAGCGGCAATGACGACGACGGCTACGACAGCTTGCGGAGGTGGGAAAACTGTAAACAGCAATAGTAACATCAGTAGTGCTGATAATGATAATAATAATAA TGGCAGTAGTGGTGACAAAAAGGATAATGGGAAAGTTAATGCTAGCAGCAATGGGGTGACTGGGAAGCTGAAGAGGGTGAAGAGGATAATTAAGGTGAAA AAAGTGGTGAGGAGAGTAGTGTTGGGGGAGAAGAAAGGAGTGGGATTGGACAAAGCAGTTAAGGGTGCTGGTGGTAGTGGTAGTAAGGAAGTAGCGGTGT TGGAGAAGAAAGAATCAGGGTTGAAGACGGAAGAGAAGAGCAAGGAAGTGGCAGCAGAGAAGAAAGAATCAGGATTGAAGAAGGAAGATAAGAGCAAGGA AGTGGCAGCAGAGAAGAAAGAATCAGGATTGAAGAGTAGTAGTGGTAGCAAGATAGTTGAAAATGGTGATGGTTTGGGTTCTGGGGATAGTAAGGTACAG AGTGGTAGTAATAATATTAAAGAGGAAGTTGAAGAGGGGGAATTGGGGACATTGAGGTGGCCATCGAAAGGGGAAATTGAGAATGGAGAGTTCGTTCCTA CACCAGAGAAGCCAAGGAGAAGTGAGATTGAAAGAGGAGAGATTGGTAGTGGGAAATGGAAGAAAGGGGATATAGAGAAAGGGGAGATTGTTTCTGGTAA TAAATGGCGGAAAGGGGAAGCTGTTCGAGATGAAATTGAGAAAGGTGAGTTCATTCCAGACAGGTGGAATATTAAAGATGAGTATGGCTACAACAAGTCT CGTGGCAGGCATGACATGAGTAGCGAGCGTACGCCGCCTTCTGGGAAGTATTCTAGTGAGGATGTTTACAGAAGGAAAGAGTTGAGTAGAAGTGGGGGTA TGAGGTGGGAGAGTGGCCAGGAAAGGAGTACGAGGATAAGCTCAAAGATTGTTGACGAAGAAGGTTCATATAAGAGTGAGTACAGCAATGGCAAGAGCCA TGAAAGGGAGCATGCTTCTGGTAACAGATTGAAGCGTCATGTCACTGATTCTGATAATACCGAGCGCAAATATTACGGGGATTATGCCATTTCTAAAAGC AGGAGACTTTCTGAGGATGGTTCTCGCTATGCTTACTCAGAGCACTATTCACGTCACTCAGTAGAGAGGTTCTATAAAAGCTCTTCTTATTCGAGAGTAT CTTCATCAGACAAGTACTCATCCAGGCATCATGAACCCACTTTGTCCTCTAAGGTTGTTTATGACAGGCATAGTCATTCTGACCGGTCCCCACATGATAG GCCCCGATACTATGATCACAGGGACCGAAGTCCAATCCGTTATGAGAAATCTCCCTATGGCCGAGAAAAGACACCATTTGGACACGAGAGATCTCCATAT GGGCGAGAAAGGTCTCCATATGGACGTGAGAGGTCACCATATTGGCGGGACAGATCCCCAGATGGACATGATAGATCCCCCTATGGACGTGAGAAATCCC CATATGGACGAGAGAGATCTCCGTATGTACTTGAGAAATCACCATATGACCGAAGCAGCTATAATGAGCATAGAAAAAGGAGTCCTGCTTATTTCGAAAG GTCCCCACAGGATCGAACCCGGCACCATGATCGCAGTGATAGGACACCAAGTTACTTGGAGCGATCCCCACATGACCGGGCTAGGCCCACTAATCACAGA GAAGCAAGTCGAAAGGGGGCGGCACATGAGAAGCGGAGCTCTCAGTATGGTAATAAAAAGCAGGATGATAAGATCAGCCAAAAGGATCCTGCAGTAAAGG ACACTGAACTCTCAGCTAAAGAATCTCAAGATAAAAGCAGTGTGCATAATCTTGATGGTTTGGATGAAAAGAATACCAGCAGTGAAACTCGCTTAGAAGA GAAATCTGAGAGCCCCGTTATAAATGCCAAAGAGTCTCCTAAAGTTGATGGACCTCCTCCAGAAGAGCTGCAATCAATGGAGGAAGATATGGATATATGT GATACGCCACCACATGTCCCTGTGGTGGCTGACACATCGACTGGTAGATGGTTTTACCTAGATCATTTTGGTGTGGAATGTGGCCCTTCGAAGTTATGTG AGCTTAAGGCGCTTGTCGATGAAGGAATTCTTATGTCTGATCACTTCATCAAGCACTTGGATAGTGATAGGTGGTTAACTATTGAGAATGCAGTTTCACC GTTGGTGACTGTGAATTTCCCATCAGTTGTGCCAGATGTTATAACTCAGCTAGTAAGCCCTCCAGAGGCACCTGGTAATCTATTGGCAGATACTGGAGAT ATCGTGCAATCTTGTTCTCAGATTGGCGAGGGAGTGCCAGGGAATTTGCTGCAGCCACTGGTCTGCCCTAATCACAGCGCAGTTGCATCTGAGCCTTTAG AAGATCTCCAGATTGACGAAAGAGTTGGAGCCCTGTTGGAGGGTTTTTCTGTTGTTCCTGGCAGTGAGATAGAGACTGTTGGAGAAGCTCTGCAAATGAA ATTTGAACATGTGCAATGGGAGGGGTGGATAAAAGCAGAAGGTTTTGCTTGGTATCTAGCTTCCACTGCTGAACAACAGGATCAAAACAGTAATGAATTA CTAGGACATTCTGATTTGATAACAAAAGAAGCTGTTGAAGCATGGCCAGGTTCTCTTGCTGACAAGGATGATGGCTTTGCCTCTTCTGTTGATTCCGCTG ACTGGTTTTCTGGTCGATGGTCTTGCAAGGGTGGGGACTGGAAGAGGAATGATGAATCTGTCCAGGATAGATTTACCAGAAGGAAAGTTGTTCTCAATGA TGGATTCCCATTATGCCACATGACGAAGTCTGGGTGTGAGGACCCACGGTGGCAAAGAAAAGATGATTTGTATTTTCCTTCTCAAAGTAGGAAGCTTGAC CTCCCTCCTTGGGCTTTCTCCAGTACAGATGAGAGAAATGATACTGGTGGTGTCAGTAAATCAACTCTCAATAAACCTCCAATAACAAGGGGAGTGAAAG GAACCGTGCTACCAGTAGTTAGGATAAATGCATGCGTGGTTCAGGACCATGTTTCTGAAACCCGTACTAAAGTTCGAGGGAAGGACAGATATCATTCAAG AGCTGCTCGGACACATTCTGCAACTAATGATGTGAAGAGATCATCAGTAGAGAGTGATTCTCAATCCAAAGTTGTCAATGACCCAGATTCACATGGCTGT TGGAAGTCTACTGCGCCACTTAATACTCCCAAAGACTGTCTCTGTACAGCAGATGACTTACAATTGAATTTGGGTGAGTGGTACTACTTAGATGGTGCTG GGCATGAACAAGGGCCATCATCATTTTCAGAGCTTCAGAACTTGGCAGATATAGGTACCATCCAAAAGTATAGTAGTGTTTTCAGGAAATTTGATAGAGT GTGGGTTCCGATTACCTCAGCCACCGAGACTTTTGGAGCCAGTGTCAAAATTCAACAGTCAAATGTTGAGCCAGTTATTGGTTCTTCAGGAACCCTTTCA AAATCCCAGACTGCTTCCAACATTGAGAGTGACAGAAGTTCCAGTTCATTTCACAGCCTTCATCCACAGTTCATTGGTTTTACCCGTGGGAAGCTACATG AATTGGTAATGAAATCATACAAAAACAGGGAGTTTGCAGCTGCCATAAATGAGGCTTTGGATCCTTGGATTGTTGCAAAACGGCCTCCAAAAGAGATCGA TAAACATATGTATCTCAAATCAGAAATAGATGCACGTGCTGGAAAAAGAGCCCGGATGCAGCCTGCCCAAAATGACGAGGATTATGAAATGGAGGAAGGC ACATTGCATAAGGATGAAACCACTTTTGAGCAACTATGTGGTGATACCAATTTCCACAGAGAAGAGAGCATGTGTTCTGAGATTGAGGCGGGAAGCTGGG GTTTATTGGATGGTCATATGCTGGCACGAGTCTTTCATTTCCTGAGATCTGACATGAAATCCCTAGTCTTTGCTTCCTTGACTTGTAAAAAGTGGAGATC TGCTGTTAGTTTTTACAAGGGCATATCAATTCAAGTTGATCTTTCCTCTGGGGCCCCCAACTGTACCGACATGATGGTGAGGAGTATCATGAATGGTTAT AACAAAGAAAAAATTAATGCAATGGTGCTGGCGGGTTGTAAGAATATCACATCTGGCATGCTTGAAGAAATTCTTCGCTCTTTCCCATGTTTATCTTCTA TAGATATTAGAGGTTGCACCCAATTCATGGAGTTGGCCCTTCGATTTCCAAATATTAGCTGGCTCAAGAGCCGCACCAGGATCTCTGTGGAGTCAAATTC TAAATTAAGGAGTCTTAAACAAATCAGTGAGAGAGATGATTTTGGGGAACTCAAGGAGTATTTTGATAGTGTGAACAAGAGAGACTCAGCTAATCAATTA TTTCGTCGAAGTTTGTACAAACGCTCAAAAGTGTTTGATGCTAGAAAGTCATCATCCATTCTACCCAGGGATGCTCGTATGAGGCGATGGGCAGTTAAGA AATCTGAAAATAGCTATAGAAGGATGGAGGGGTTTCTAGCTTCAGGTTTAAAGGACATAATGAAGGAAAATACCTTTGATTTTTTTGTGCCTAAGTTGAC AGAAATTGAGGATAGGATGAAGAGTGGCTATTATGTTGGGCATGGATTGAGGGCTGTCAAGGAGGATATTAGTCGAATGTGCAGGGATGCAATTAAAGTG AAGAATCGGGGTGCTGGAGACATGAATCACATCATTACATTGTTTCTCCAACTAGCCTCTCGGTTGGAAGAGAGTTCTAAGTTTTCTTACGAAAGAGATG AGCTCATGAAGTCATGGAAAGATGATGTATCTACAGCATTGGACTCTGCTCCAATTAAACATAAGAAGAAAGCTATTGATAAGAAGTACATGAATAGGAG CAATGGTACTATACTTGCTAATGGTAGTTTTGATTTTGGAGAATATGCATCTGATCAGGAAATTAAGAAGCGGATATCCAAACTGAATAGAAAATCCATG GATTCAGGAAGTGAAACTTCTGATGACCGGTCTTCTGAAGATGGCAGGAGTGGTGGTGGTAGTACTGCCTCAGATACAGAAAGTGATTTGGATTTCCGAT CAGAAGGCCGACCTGGGGACTCAAGAGGAGATGAATACTTTATGACAGATGAGGATGAACGTGAATGGGGTGCTCGCATGACAAATGCGAGTCTGGTTCC TCCTGTTACTAGGAAGTATGAAGTCATAGACCAATATGTTATTGTAGCAGATGAGGAGGATGTCCAGCGAAAAATGTCTGTGTCTTTGCCAGATGACTAT GCTGAGAAGCTTGATGCACAGAAAAATGGCACCGAGGAACTGGATATGGAACTTCCTGAAGTTAAGGATTACAAACCTAGAAAACAGCTTGGAGATGAAG TTATAGAACAGGAAGTTTATGGAATTGATCCCTATACCCACAATCTTTTACTTGATTCCATGCCTGAAGAAGTGGACTGGCCTCTGTCACAAAAACACAT GTTTATTGAAGATGTGCTACTCTGTACTCTGAATAAGCAAGTCAGGCACTATACTGGTGCCGGGAACACTCCAATGACATATCCTTTACAACCTGTTGTT GAAGAACTTGAACAAGCTGCTATGGAGGATTGTGACACAAGAACAATGAAAATCTGCCGGGGTATCTTGAGAGCCATAGATAGTCGACCTGATGACAAAT ATGTTGCTTACCGGAAGGGGCTTGGTGTTGTATGCAACAAAGAAGCTGGTTTTCGAGATGATGACTTTGTTGTGGAGTTTTTGGGAGAGGTATATCCTGC GTGGAAATGGTTTGAGAAGCAAGATGGGATTCGATTATTACAGAAGGACAGTAAAGAGCCAGCTCCAGAATTTTACAACATTTATCTTGAGAGGCCAAAG GGTGATGCTGATGGTTATGATTTGGTTGTTGTTGATGCCATGCACAAGGCAAACTATGCAAGTCGAATCTGTCACTCATGCAAACCTAATTGTGAAGCAA AAGTTACTGCTGTAGGTGGTCAGTACCAGATTGGAATCTACTCTGTGCGTAAAATCCAACATGGCGAGGAGATAACCTTTGATTACAATTCTGTGACAGA GAGTAAAGAAGAATATGAAGCATCTGTCTGTTTGTGTGGTAGCCAAGTTTGCAGGGGCAGCTACTTAAATTTGACTGGTGAAGGGGCTTTTCAAAAGGTG TTGAAGGAGTGTCATGGATTACTGGATCGACATTATTTGATGCTCGGAGCTTGTGAATTAAATTCTGTGTCTGAAGAAGATTATCTGGACCTGGGTAGGG CTGGTTTGGGTAGTTGTTTACTTGGTGGGTTGCCAGATTGGGTGGTTGCATATTCAGCTCGTCTGGTTAGATTTATAAATCTGGAAAGAACAAAGCTTCC TGAGGAAATTCTAAGGCATAATTTGGAAGAGAAAAAGAAATATTTTGCAGATATATGTATCGAGGTTGAGAGAAGTGATGCTGAGGTTCAGGCTGAAGGT GTCTACAACCAGAGGCTTCAAAATTTGGCTGTTACACTTGACAAGGTGAGATATGTAATGAGGTGTATATTTGGTGACCCAAAGCTGGCTCCACCTCCAC TGGAGAAGCTTACTCCTAAAGAAACCGTTTCCTTCCTCTGGAAAGAAGAGGGATCACTTGTTGAGGAACTTCTGCAGTGCATGTCTCCTCATATGGATGG AGAAATGCTAAATGACCTTAAGTCCAAGATTTATGCACATGATCCATCAGATTCTGATGACATTCCGAAAGCAATCCAGAAATCATTATTGTGGTTGAGG GATGAGGTCCGCAGTCTTCCATGTACATACAAGTGCCGGCATGATGCTGCAGCTGACTTAATTCATGTTTATGCTTATACAAAGAGCTTCTTTAGAGTTA GGGAATATGATGCATTTACTTCTCCACCGGTCTACATAAGTCCACTTGACTTGGGCCCCAAATGTGCTGATAAGTTAGGGGGTCTTCCCCACAAGTATCA AAAGACCTATGGTGAGAACTATTGTATGGGGCAGTTGATATTTTGGCATATCCAGACTAACACTGAGCCTGATTCTACTCTTGCTAAAGCGAGTAAGGGC TGCTTGTCATTACCTGATATCGGTTCCTTCTACTCAAAGGTTCAGAAGCCATCACAGCAGCGCATTTATGGCCCAAAGACTGTGAAAATGATGTTGGGAA GAATGGAGAAGTACCCTCAGAAACCGTGGCCCAAGGACCAAATATGGTCATTTAAGAGTTCTCCAAAAGTTTTTGGCAGCCCAATGCTAGATGCTGTATT GAACAAGTCCCCACTAGACAGAGAAATGGTACATTGGTTGAAGCACAGACCTACAGTATATCAAGCGATGTGGGATCGATGA
AA sequence Show only first row Show all	>Potri.017G041100.1 pacid=42814634 polypeptide=Potri.017G041100.1.p locus=Potri.017G041100 ID=Potri.017G041100.1.v4.1 annot-version=v4.1 MGSGGVACMPLQHGSNNIIMEERFPVQEQPTAAAAAMTTTATTACGGGKTVNSNSNISSADNDNNNNGSSGDKKDNGKVNASSNGVTGKLKRVKRIIKVK KVVRRVVLGEKKGVGLDKAVKGAGGSGSKEVAVLEKKESGLKTEEKSKEVAAEKKESGLKKEDKSKEVAAEKKESGLKSSSGSKIVENGDGLGSGDSKVQ SGSNNIKEEVEEGELGTLRWPSKGEIENGEFVPTPEKPRRSEIERGEIGSGKWKKGDIEKGEIVSGNKWRKGEAVRDEIEKGEFIPDRWNIKDEYGYNKS RGRHDMSSERTPPSGKYSSEDVYRRKELSRSGGMRWESGQERSTRISSKIVDEEGSYKSEYSNGKSHEREHASGNRLKRHVTDSDNTERKYYGDYAISKS RRLSEDGSRYAYSEHYSRHSVERFYKSSSYSRVSSSDKYSSRHHEPTLSSKVVYDRHSHSDRSPHDRPRYYDHRDRSPIRYEKSPYGREKTPFGHERSPY GRERSPYGRERSPYWRDRSPDGHDRSPYGREKSPYGRERSPYVLEKSPYDRSSYNEHRKRSPAYFERSPQDRTRHHDRSDRTPSYLERSPHDRARPTNHR EASRKGAAHEKRSSQYGNKKQDDKISQKDPAVKDTELSAKESQDKSSVHNLDGLDEKNTSSETRLEEKSESPVINAKESPKVDGPPPEELQSMEEDMDIC DTPPHVPVVADTSTGRWFYLDHFGVECGPSKLCELKALVDEGILMSDHFIKHLDSDRWLTIENAVSPLVTVNFPSVVPDVITQLVSPPEAPGNLLADTGD IVQSCSQIGEGVPGNLLQPLVCPNHSAVASEPLEDLQIDERVGALLEGFSVVPGSEIETVGEALQMKFEHVQWEGWIKAEGFAWYLASTAEQQDQNSNEL LGHSDLITKEAVEAWPGSLADKDDGFASSVDSADWFSGRWSCKGGDWKRNDESVQDRFTRRKVVLNDGFPLCHMTKSGCEDPRWQRKDDLYFPSQSRKLD LPPWAFSSTDERNDTGGVSKSTLNKPPITRGVKGTVLPVVRINACVVQDHVSETRTKVRGKDRYHSRAARTHSATNDVKRSSVESDSQSKVVNDPDSHGC WKSTAPLNTPKDCLCTADDLQLNLGEWYYLDGAGHEQGPSSFSELQNLADIGTIQKYSSVFRKFDRVWVPITSATETFGASVKIQQSNVEPVIGSSGTLS KSQTASNIESDRSSSSFHSLHPQFIGFTRGKLHELVMKSYKNREFAAAINEALDPWIVAKRPPKEIDKHMYLKSEIDARAGKRARMQPAQNDEDYEMEEG TLHKDETTFEQLCGDTNFHREESMCSEIEAGSWGLLDGHMLARVFHFLRSDMKSLVFASLTCKKWRSAVSFYKGISIQVDLSSGAPNCTDMMVRSIMNGY NKEKINAMVLAGCKNITSGMLEEILRSFPCLSSIDIRGCTQFMELALRFPNISWLKSRTRISVESNSKLRSLKQISERDDFGELKEYFDSVNKRDSANQL FRRSLYKRSKVFDARKSSSILPRDARMRRWAVKKSENSYRRMEGFLASGLKDIMKENTFDFFVPKLTEIEDRMKSGYYVGHGLRAVKEDISRMCRDAIKV KNRGAGDMNHIITLFLQLASRLEESSKFSYERDELMKSWKDDVSTALDSAPIKHKKKAIDKKYMNRSNGTILANGSFDFGEYASDQEIKKRISKLNRKSM DSGSETSDDRSSEDGRSGGGSTASDTESDLDFRSEGRPGDSRGDEYFMTDEDEREWGARMTNASLVPPVTRKYEVIDQYVIVADEEDVQRKMSVSLPDDY AEKLDAQKNGTEELDMELPEVKDYKPRKQLGDEVIEQEVYGIDPYTHNLLLDSMPEEVDWPLSQKHMFIEDVLLCTLNKQVRHYTGAGNTPMTYPLQPVV EELEQAAMEDCDTRTMKICRGILRAIDSRPDDKYVAYRKGLGVVCNKEAGFRDDDFVVEFLGEVYPAWKWFEKQDGIRLLQKDSKEPAPEFYNIYLERPK GDADGYDLVVVDAMHKANYASRICHSCKPNCEAKVTAVGGQYQIGIYSVRKIQHGEEITFDYNSVTESKEEYEASVCLCGSQVCRGSYLNLTGEGAFQKV LKECHGLLDRHYLMLGACELNSVSEEDYLDLGRAGLGSCLLGGLPDWVVAYSARLVRFINLERTKLPEEILRHNLEEKKKYFADICIEVERSDAEVQAEG VYNQRLQNLAVTLDKVRYVMRCIFGDPKLAPPPLEKLTPKETVSFLWKEEGSLVEELLQCMSPHMDGEMLNDLKSKIYAHDPSDSDDIPKAIQKSLLWLR DEVRSLPCTYKCRHDAAADLIHVYAYTKSFFRVREYDAFTSPPVYISPLDLGPKCADKLGGLPHKYQKTYGENYCMGQLIFWHIQTNTEPDSTLAKASKG CLSLPDIGSFYSKVQKPSQQRIYGPKTVKMMLGRMEKYPQKPWPKDQIWSFKSSPKVFGSPMLDAVLNKSPLDREMVHWLKHRPTVYQAMWDR

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G15180		SDG2, ATXR3	SET domain protein 2 (.1)		Potri.017G041100 [exp]	0	1
AT4G15180		SDG2, ATXR3	SET domain protein 2 (.1)		Potri.007G119300 [exp]	1.00	0.9832	SDG904
AT5G53440			unknown protein		Potri.012G013800 [exp]	2.23	0.9377
AT2G16485			nucleic acid binding;zinc ion ...		Potri.009G123800 [exp]	3.00	0.9437
AT2G13370		CHR5	chromatin remodeling 5 (.1)		Potri.009G047800 [exp]	3.46	0.9363
					Potri.003G148601 [exp]	4.00	0.9430
AT4G14920			Acyl-CoA N-acyltransferase wit...		Potri.010G087700 [exp]	4.24	0.9239
AT5G53440			unknown protein		Potri.015G014800 [exp]	5.74	0.9209
AT2G13370		CHR5	chromatin remodeling 5 (.1)		Potri.001G253400 [exp]	6.24	0.9101
AT5G12400			DNA binding;zinc ion binding;D...		Potri.001G254300 [exp]	7.14	0.9009
AT3G63500			Protein of unknown function (D...		Potri.009G059000 [exp]	7.48	0.8886

Compare expression of checked genes

Potri.017G041100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.