Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G11480 263 / 3e-80 eukaryotic translation initiation factor-related (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G119200 [exp] 854 / 0 AT1G11480 145 / 7e-37 eukaryotic translation initiation factor-related (.1.2) Potri.011G031900 [exp] 339 / 8e-109 AT1G11480 318 / 9e-101 eukaryotic translation initiation factor-related (.1.2) Potri.009G130200 [exp] 52 / 5e-07 AT4G38710 192 / 1e-56 glycine-rich protein (.1.2) Potri.004G169100 [exp] 49 / 8e-06 AT4G38710 149 / 1e-40 glycine-rich protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039708 [exp] 489 / 2e-167 AT1G11480 237 / 3e-70 eukaryotic translation initiation factor-related (.1.2) Lus10018497 [exp] 476 / 2e-162 AT1G11480 242 / 5e-72 eukaryotic translation initiation factor-related (.1.2)
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.017G041300.1 pacid=42813361 polypeptide=Potri.017G041300.1.p locus=Potri.017G041300 ID=Potri.017G041300.1.v4.1 annot-version=v4.1 ATGTCGAAGAAGAAAACGGCGTCGACTATGTCGTTGAAGGACTTTCACGGTGGTTCTATTCCTTCTGATCTCCCTTTACCTTCTGCTCCTGGCCTTATGA TGAGGGACCGAAATGCGTCGACGAATTGGGGAAACAACTCGATGCGGCCGGATCTCCGTCCACGGCCCAAGTCATCAGGAGCAGCTCGTGGTTTTGATGA GAAAGCTTCGTTTTTATCTCACCCTGCACCTATAGGTAGAAACTTTGATGAGGACGAGCGTAAGCCATTAGATGCTTTATCTGCTCCTCGTCGTACTATT AGTGATGAAAATGTTCGCGCCGTTCATCAGCCGGAGTATGTTTCGTCTATTAGGGTGCCTGATAGACCGGTGTCAAGCCCGGTACCACAGTCCCCGAGTG CTTTGTCTCCATTGAAGTCGGGAAGAGGTTCAATTGTGGTTAGCTCGCAGAATGCGGGTGGTTGGGGGGTGAGTAGTAATCCGCCGAATGCTTGGGGGGC GAGGAGAGATGTGGTGAGTGTTAATGAGGTGAGGGGCTCGGCTGTGTTGTCAGCGTCGAATACTGTGACAAAGTTTGCTCAAGCAAGTGCACTGGAAAAG GTATCTTCAGGATTATGGCAATCAAAGAATCCTGGTGATCTTTTACCGCATCTGATTTATTCACAGGAGAGCGGTGCGAGTCATAGTGTGGATGTGGGTA GGGAAAGGGGTGATTATGATACTGCAAGGGGAAGTCAAGCTGAAAGTGGTTGGGTCACTGGAGATAGAAATCAGGGTGGGGGAAGGACAATGTCGAATTA TAGAAGGGGTCAATCTCGAATGCACTCCGAAGAGGTTCCTACTGGAGGTGCTGTTGGGTCTCAAACTCGATCAGTAATGCCCCTTGAAGCATCAGATCGA CCTAAGTTGAATCTTCTTGCAAGAACTAAACCATTGGAGAGACCAGAAAATGACTATAGACAGGGGCACCAGCAGCCTATAGTATCTGGGAAGATTGAAG TTGCCCATGAGTTGTATGGAAATGAAAATCCTTCAAAACCAGGGTTGGTTGAAGCTAGTCAGCTAGCTGAGAGATCAATTGAGCGTCCCAAATTGAATTT GAAGCCTCGCACACAGCCTCTTGAACAATCTGATGGAATTCTTGAAAGAGAAAGGAGTACATTGTTTGGCAGTGCTCGTCCACGGGAATTGGTTCTCAAG GAACGAGGTGTGGATGACATAGCAATCAATAACCTTGACCTGAATCATTCGCCCAACAGGATGAATTCTCCCAAGAATGAGACGACATCAGAACATGTGG CTCCAACTGCTCGTCAGAGTCAGAAAAATGACAACCGAGGGGCTATCGACAGAAGAAATGGGAGGGATTCTGAGAGGAAAGATCAACGGATGGACCATGA GAAAACCGATCTGGAAAGGAAAAACTGGAGGAATGATAAATGGAAAAGCAGGAAGGACGCCAAAGAACAGCGACCTGAACCTGAAACTTGGCGCAAACCT ATTGAAGAACCAAAACCTGCTTCATCTGACTCCGCAGGAAACCGCCCTGGTAAAATTGTATCTGCCTTGGAGCTAGCTCAAGCATTCTCAAAGTCAGCCT CCGATCCAAAGATTCAGAATATACCTTCTTCTCAAAGAGGCATGCCTGGCCGCAATGATCAGCCCTTCTCACGATTGACAGACACCCGTGAGCATTACCC ATCACCAACCACAACACCAGTCACACGACATCGAATAAATGGTTACTGA
AA sequence Show only first row Show all	>Potri.017G041300.1 pacid=42813361 polypeptide=Potri.017G041300.1.p locus=Potri.017G041300 ID=Potri.017G041300.1.v4.1 annot-version=v4.1 MSKKKTASTMSLKDFHGGSIPSDLPLPSAPGLMMRDRNASTNWGNNSMRPDLRPRPKSSGAARGFDEKASFLSHPAPIGRNFDEDERKPLDALSAPRRTI SDENVRAVHQPEYVSSIRVPDRPVSSPVPQSPSALSPLKSGRGSIVVSSQNAGGWGVSSNPPNAWGARRDVVSVNEVRGSAVLSASNTVTKFAQASALEK VSSGLWQSKNPGDLLPHLIYSQESGASHSVDVGRERGDYDTARGSQAESGWVTGDRNQGGGRTMSNYRRGQSRMHSEEVPTGGAVGSQTRSVMPLEASDR PKLNLLARTKPLERPENDYRQGHQQPIVSGKIEVAHELYGNENPSKPGLVEASQLAERSIERPKLNLKPRTQPLEQSDGILERERSTLFGSARPRELVLK ERGVDDIAINNLDLNHSPNRMNSPKNETTSEHVAPTARQSQKNDNRGAIDRRNGRDSERKDQRMDHEKTDLERKNWRNDKWKSRKDAKEQRPEPETWRKP IEEPKPASSDSAGNRPGKIVSALELAQAFSKSASDPKIQNIPSSQRGMPGRNDQPFSRLTDTREHYPSPTTTPVTRHRINGY

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G11480			eukaryotic translation initiat...		Potri.017G041300 [exp]	0	1
AT1G74875			unknown protein		Potri.013G008800 [exp]	10.58	0.9472
AT1G09070		(AT)SRC2, (AT)S...	soybean gene regulated by cold...		Potri.005G026650 [exp]	14.00	0.8283
AT1G48270		GCR1	G-protein-coupled receptor 1 (...		Potri.008G206000 [exp]	14.45	0.8234	GCR1.1
AT1G67930			Golgi transport complex protei...		Potri.005G203900 [exp]	16.03	0.7952
AT4G27670		HSP21	heat shock protein 21 (.1)		Potri.015G005801 [exp]	18.81	0.9457
					Potri.014G065951 [exp]	24.28	0.9451
AT3G12050			Aha1 domain-containing protein...		Potri.016G060100 [exp]	28.01	0.8573
AT4G16265		NRPE9B, NRPD9B,...	RNA polymerases M/15 Kd subuni...		Potri.010G142500 [exp]	30.98	0.9442
AT5G55690	MADS		MADS-box transcription factor ...		Potri.001G329800 [exp]	31.78	0.8259
AT5G67500		VDAC2, ATVDAC2	ARABIDOPSIS THALIANA VOLTAGE D...		Potri.001G294000 [exp]	32.24	0.7922

Compare expression of checked genes

Potri.017G041300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.