Plant FIBer expression Database

Potri.017G041400 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues

No hit found

Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.007G119100
[exp]
121 / 1e-36 ND /
Flax homologues

No hit found
PFAM info
Representative CDS sequence
>Potri.017G041400.2 pacid=42813287 polypeptide=Potri.017G041400.2.p locus=Potri.017G041400 ID=Potri.017G041400.2.v4.1 annot-version=v4.1
ATGAAATTTTTAGCACGCTTGGGTTCATGTTTTTTATCAACCACAGCAATAGCAGCAGCTCCTGAGGCGGAGGACGTGGATGTGGTGGAGGAGCTGGCCG
GGTCAGCAACCACGGTGACTAATGGTGATGTTCCACTGTTAACTCCGGCTAGTGGAAGGAGAAGCAGATCGAGAAGACGTGGATCATGGCGACCGGCCCT
TTCAGCTATATCGGAAGACAGGACGGTTTCGTATAGACGGAGCAAACCAGCTGAGAATACTGAGAAGAAAACACAGACTAGCAAACTGAAGATAAAACCT
GAGGGTCTAAGTTTTAGTGTGCAGATGTCGTTTTCTGGGTTCTCTCCCACACCGTTTATGTTTTAA
AA sequence
>Potri.017G041400.2 pacid=42813287 polypeptide=Potri.017G041400.2.p locus=Potri.017G041400 ID=Potri.017G041400.2.v4.1 annot-version=v4.1
MKFLARLGSCFLSTTAIAAAPEAEDVDVVEELAGSATTVTNGDVPLLTPASGRRSRSRRRGSWRPALSAISEDRTVSYRRSKPAENTEKKTQTSKLKIKP
EGLSFSVQMSFSGFSPTPFMF

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
Potri.017G041400
[exp]
0 1
AT4G35190 LOG5 LONELY GUY 5, Putative lysine ... Potri.004G181800
[exp]
1.73 0.8919
AT3G24220 ATNCED6, NCED6 nine-cis-epoxycarotenoid dioxy... Potri.003G176300
[exp]
6.48 0.8251
AT5G47900 Protein of unknown function (D... Potri.001G071500
[exp]
8.36 0.7813
AT3G49710 Pentatricopeptide repeat (PPR)... Potri.014G012500
[exp]
8.66 0.7529
AT1G18010 Major facilitator superfamily ... Potri.012G011000
[exp]
8.83 0.8162
AT1G77330 2-oxoglutarate (2OG) and Fe(II... Potri.005G182700
[exp]
11.48 0.8077 ACO4
AT3G61230 LIM PLIM2c PLIM2c, GATA type zinc finger ... Potri.003G124300
[exp]
21.00 0.7982
AT5G60490 FLA12 FASCICLIN-like arabinogalactan... Potri.015G013300
[exp]
25.29 0.8052
AT3G15620 UVR3 UV REPAIR DEFECTIVE 3, DNA pho... Potri.003G060000
[exp]
26.45 0.7998
AT1G67330 Protein of unknown function (D... Potri.001G056300
[exp]
27.92 0.8037

Potri.017G041400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.