Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G22104 489 / 2e-169 Phototropic-responsive NPH3 family protein (.1) AT3G19850 276 / 6e-86 Phototropic-responsive NPH3 family protein (.1) AT1G50280 234 / 2e-70 Phototropic-responsive NPH3 family protein (.1) AT5G66560 214 / 1e-61 Phototropic-responsive NPH3 family protein (.1) AT3G08570 212 / 5e-61 Phototropic-responsive NPH3 family protein (.1) AT5G48800 211 / 1e-60 Phototropic-responsive NPH3 family protein (.1) AT3G44820 211 / 2e-60 Phototropic-responsive NPH3 family protein (.1) AT3G50840 203 / 3e-58 Phototropic-responsive NPH3 family protein (.1) AT2G47860 191 / 4e-53 SETH6 Phototropic-responsive NPH3 family protein (.1.2.3) AT1G30440 191 / 6e-53 Phototropic-responsive NPH3 family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G118800 [exp] 955 / 0 AT3G22104 505 / 1e-175 Phototropic-responsive NPH3 family protein (.1) Potri.004G030600 [exp] 471 / 8e-162 AT3G22104 313 / 1e-100 Phototropic-responsive NPH3 family protein (.1) Potri.011G032100 [exp] 432 / 2e-146 AT3G22104 309 / 4e-99 Phototropic-responsive NPH3 family protein (.1) Potri.010G170900 [exp] 311 / 5e-99 AT3G19850 426 / 2e-143 Phototropic-responsive NPH3 family protein (.1) Potri.008G085500 [exp] 306 / 5e-97 AT3G19850 449 / 2e-152 Phototropic-responsive NPH3 family protein (.1) Potri.009G150500 [exp] 215 / 4e-62 AT3G44820 826 / 0.0 Phototropic-responsive NPH3 family protein (.1) Potri.002G242300 [exp] 211 / 5e-61 AT5G48800 899 / 0.0 Phototropic-responsive NPH3 family protein (.1) Potri.001G357100 [exp] 211 / 1e-60 AT1G30440 971 / 0.0 Phototropic-responsive NPH3 family protein (.1) Potri.004G189800 [exp] 208 / 1e-59 AT3G44820 835 / 0.0 Phototropic-responsive NPH3 family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039710 [exp] 597 / 0 AT3G22104 433 / 9e-148 Phototropic-responsive NPH3 family protein (.1) Lus10018499 [exp] 583 / 0 AT3G22104 420 / 2e-142 Phototropic-responsive NPH3 family protein (.1) Lus10034200 [exp] 246 / 2e-74 AT3G19850 390 / 1e-129 Phototropic-responsive NPH3 family protein (.1) Lus10012901 [exp] 227 / 3e-66 AT3G19850 415 / 3e-138 Phototropic-responsive NPH3 family protein (.1) Lus10030554 [exp] 216 / 3e-62 AT3G19850 414 / 5e-138 Phototropic-responsive NPH3 family protein (.1) Lus10037432 [exp] 213 / 2e-61 AT5G66560 747 / 0.0 Phototropic-responsive NPH3 family protein (.1) Lus10041276 [exp] 210 / 3e-60 AT5G66560 750 / 0.0 Phototropic-responsive NPH3 family protein (.1) Lus10019522 [exp] 210 / 5e-60 AT3G44820 781 / 0.0 Phototropic-responsive NPH3 family protein (.1) Lus10025928 [exp] 207 / 2e-59 AT5G48800 925 / 0.0 Phototropic-responsive NPH3 family protein (.1) Lus10023274 [exp] 200 / 1e-56 AT1G30440 910 / 0.0 Phototropic-responsive NPH3 family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03000 [poplar] [flax] NPH3 NPH3 family
Representative CDS sequence Show only first row Show all	>Potri.017G041600.1 pacid=42814090 polypeptide=Potri.017G041600.1.p locus=Potri.017G041600 ID=Potri.017G041600.1.v4.1 annot-version=v4.1 ATGGCTGTTTGCTGTGATCTTGAAGTAGATGTCAATGGTGAAGAGACTTTCATGGTGGACAAGAAGATCATTGCTTCATATTGTGGCAGACTAAGCAAAT TATCTGGTAAACCAACAGGTAGTGCAAGAAATTTGAAAGTGATATTCAATGACTTTCCTGGTGGGGCTGAAAGTTTTGAACTCATGTCAAGGTTCTGCTA CAATAATGGTAGAACTGCCATAACTCCTTCCAATATTTCTTTCCTACATTCGGCTGCACAGTTCATGGAAATGAACAATTCTGTATCTGGAACTCATAAC TTATTGGAAGAGACCGGGAAATCACTTAAAGAGATGAATTACTGGACATGGTCTGAGCTTTTAATCACTACAAAGAAATGCCAAGATTTACTTCCATTTC CTAATTCTACGGGTATCCTTGAAAAATGTGTGGATTCTCTTATTGGAAGGATCACTACTTCTGGTGAGCCTAGTCCGTGTCCATCTACTTCTTCTCCAGA CAGCTCTGGAGTTCGGTTGTCATGTGACACTAGAAGCACTGAGAGTTTGAAGAATAGCTTCTCTCGAGCAACCTGGTGGTTTGAGGATCTTTTGGTTTTG AGCACTAATTTGGTTGGAATGGTGTTCAAATCCATGGTCTCACAGAAGTTTGATCATGTTATCATTAGTAGATTTCTCTTTTATTACCAGAAATCAAAGT GCTATACTGGCACGTCTGATGAGAAGCGTAAAGTTGTTGAAACTGTCATAGATATGCTTTATATTCTTAATTGGAACTCTGTTTCATTCAAGAGTTTATT TGGGATTCTTCGAGTTGCTTTGAATTGTAACATAAGAAAATGTAGCAGGACCAAGTTGGAGAGTATGATAGGTTCTCAGATGGATCAAGCAACTCTAGAT AATCTGCTAATTCCTTCTCCATATGGGATGAATTACTTGTATAATGTGAATCTTGTTCTAAGGTTCCTGAAAGCTTTTCTGCATGGAGGAATCAGTCAGG TGTTCCCTATACAATTGAGAAAAGTTGCTAGCTTGATGGACTTTTATATAGCAGAAGTAGCCCCAGATCCTTGTCTAAAGCCTTCTAAGTTCTTGGCCCT AGCCATGGCCCTGCCAGATTGTGCCAGAGAATCGTACGATGGAATCTACCGTGCCACTGACATGTATCTAGAGGTGCATACCGGATTATCAAAAGAAGAA AAGATGAAGATATGCTGCACATTGAATTACGAGAAGCTCTCAGCTGAAGCTTGCATTCACCTTTCTCAGAACAAAAATTTTCCATCAAAATGTGCAGTCC AAGCTCTCATGTCTCAGCAAGTCAAGCTCAAAAGCTTACTCAAGGCCACTGGCAAAACAAAATGCTATATTGATTCATCTTCTGGTGTAAGTGAAACTGG AAGCAAGGGAAAGAAAAATGAAACTAGTAAACAAATTGTGCTCTGTGCTGGGAAACTTGACCTTCCAACTGATAATGATAAGCTTAGAGCACATCTGCAA GGAATGCAGTGGAGGGTGACGGAATTGGAGAGAGTTTGCATGAAAATGCAAGCACCGATGACAAAAATCATGAAGTCAAGGGTATCAAACCATAGGACTT CCAGATCCTTACCCAGGCTATGTTCGTGA
AA sequence Show only first row Show all	>Potri.017G041600.1 pacid=42814090 polypeptide=Potri.017G041600.1.p locus=Potri.017G041600 ID=Potri.017G041600.1.v4.1 annot-version=v4.1 MAVCCDLEVDVNGEETFMVDKKIIASYCGRLSKLSGKPTGSARNLKVIFNDFPGGAESFELMSRFCYNNGRTAITPSNISFLHSAAQFMEMNNSVSGTHN LLEETGKSLKEMNYWTWSELLITTKKCQDLLPFPNSTGILEKCVDSLIGRITTSGEPSPCPSTSSPDSSGVRLSCDTRSTESLKNSFSRATWWFEDLLVL STNLVGMVFKSMVSQKFDHVIISRFLFYYQKSKCYTGTSDEKRKVVETVIDMLYILNWNSVSFKSLFGILRVALNCNIRKCSRTKLESMIGSQMDQATLD NLLIPSPYGMNYLYNVNLVLRFLKAFLHGGISQVFPIQLRKVASLMDFYIAEVAPDPCLKPSKFLALAMALPDCARESYDGIYRATDMYLEVHTGLSKEE KMKICCTLNYEKLSAEACIHLSQNKNFPSKCAVQALMSQQVKLKSLLKATGKTKCYIDSSSGVSETGSKGKKNETSKQIVLCAGKLDLPTDNDKLRAHLQ GMQWRVTELERVCMKMQAPMTKIMKSRVSNHRTSRSLPRLCS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G22104			Phototropic-responsive NPH3 fa...		Potri.017G041600 [exp]	0	1
AT5G38510			Rhomboid-related intramembrane...		Potri.017G112900 [exp]	3.00	0.9439
AT5G67030		NPQ2, LOS6, IBS...	NON-PHOTOCHEMICAL QUENCHING 2,...		Potri.005G138400 [exp]	3.74	0.9023	Pt-ZEAEPOX.2
AT3G56040		UGP3	UDP-glucose pyrophosphorylase ...		Potri.010G185800 [exp]	4.47	0.9279
AT4G16750	AP2_ERF		Integrase-type DNA-binding sup...		Potri.003G079300 [exp]	7.68	0.8615
AT1G06690			NAD(P)-linked oxidoreductase s...		Potri.005G207100 [exp]	8.66	0.9241
AT4G17300		ATNS1, NS1, OVA...	ovule abortion 8, Class II ami...		Potri.017G028800 [exp]	9.16	0.9239	NS1.2
AT3G59400		GUN4	GENOMES UNCOUPLED 4, enzyme bi...		Potri.017G030100 [exp]	9.48	0.9188
AT5G02110		CYCD7;1	CYCLIN D7;1 (.1)		Potri.006G088300 [exp]	13.49	0.9031
AT3G29320		PHS1	alpha-glucan phosphorylase 1, ...		Potri.010G160200 [exp]	15.00	0.9047
AT1G06840			Leucine-rich repeat protein ki...		Potri.013G159500 [exp]	16.43	0.8871

Compare expression of checked genes

Potri.017G041600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.